Wall clock time and date at job start Mon Mar 30 2020 23:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00275 * 2 1 4 4 H 1.48499 * 109.47165 * 275.00279 * 3 2 1 5 5 H 1.48501 * 109.47025 * 35.00119 * 3 2 1 6 6 H 1.48501 * 109.47348 * 155.00071 * 3 2 1 7 7 C 1.38814 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99995 * 149.40083 * 7 2 1 9 9 N 1.36938 * 120.00135 * 329.40974 * 7 2 1 10 10 C 1.46504 * 119.99786 * 357.14756 * 9 7 2 11 11 C 1.50695 * 109.47081 * 89.31862 * 10 9 7 12 12 O 1.20831 * 120.00173 * 5.06253 * 11 10 9 13 13 O 1.34230 * 120.00333 * 185.06312 * 11 10 9 14 14 C 1.46494 * 120.00311 * 177.14994 * 9 7 2 15 15 C 1.50704 * 109.47065 * 85.09066 * 14 9 7 16 16 O 1.21281 * 119.99638 * 5.07557 * 15 14 9 17 17 N 1.34772 * 119.99764 * 185.07410 * 15 14 9 18 18 C 1.39926 * 119.99775 * 184.90039 * 17 15 14 19 19 C 1.38873 * 120.06853 * 144.73905 * 18 17 15 20 20 C 1.38116 * 119.92443 * 179.97438 * 19 18 17 21 21 C 1.38274 * 120.07711 * 359.97438 * 20 19 18 22 22 C 1.38293 * 120.13797 * 0.03690 * 21 20 19 23 23 C 1.38111 * 120.06994 * 359.96114 * 22 21 20 24 24 H 0.97004 * 119.99991 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.47014 * 209.31989 * 10 9 7 26 26 H 1.09002 * 109.47187 * 329.32038 * 10 9 7 27 27 H 0.96693 * 117.00645 * 180.02562 * 13 11 10 28 28 H 1.08999 * 109.46896 * 325.08923 * 14 9 7 29 29 H 1.08996 * 109.47190 * 205.09167 * 14 9 7 30 30 H 0.97006 * 120.00381 * 4.90506 * 17 15 14 31 31 H 1.07996 * 120.03952 * 359.70015 * 19 18 17 32 32 H 1.08011 * 119.96101 * 179.97438 * 20 19 18 33 33 H 1.07992 * 119.93589 * 180.02562 * 21 20 19 34 34 H 1.07996 * 119.96275 * 179.97438 * 22 21 20 35 35 H 1.07997 * 120.03636 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 -1.3947 5 1 1.5045 2.6198 0.8031 6 1 3.5966 1.4119 0.5917 7 6 2.0102 -1.2022 -0.0005 8 1 2.9774 -1.2671 -0.4766 9 7 1.4685 -2.3058 0.6025 10 6 0.1855 -2.2026 1.3021 11 6 -0.9376 -2.4735 0.3345 12 8 -0.6903 -2.8162 -0.7975 13 8 -2.2127 -2.3342 0.7300 14 6 2.1719 -3.5897 0.5480 15 6 3.1822 -3.6567 1.6643 16 8 3.2396 -2.7651 2.4844 17 7 4.0217 -4.7075 1.7511 18 6 4.8892 -4.8215 2.8430 19 6 5.1919 -6.0729 3.3635 20 6 6.0490 -6.1820 4.4410 21 6 6.6059 -5.0471 5.0012 22 6 6.3062 -3.7994 4.4854 23 6 5.4499 -3.6835 3.4080 24 1 -0.4850 0.8401 0.0004 25 1 0.1527 -2.9330 2.1105 26 1 0.0760 -1.1994 1.7142 27 1 -2.8986 -2.5194 0.0742 28 1 2.6825 -3.6839 -0.4104 29 1 1.4539 -4.4023 0.6585 30 1 4.0246 -5.3847 1.0566 31 1 4.7543 -6.9594 2.9290 32 1 6.2846 -7.1549 4.8466 33 1 7.2761 -5.1350 5.8435 34 1 6.7424 -2.9149 4.9254 35 1 5.2159 -2.7089 3.0059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:19 Heat of formation + Delta-G solvation = -84.052293 kcal Electronic energy + Delta-G solvation = -21397.901134 eV Core-core repulsion = 17975.379006 eV Total energy + Delta-G solvation = -3422.522128 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.35776 -40.56367 -39.29498 -37.33805 -36.26234 -35.56138 -33.48667 -31.74878 -30.97961 -29.54661 -28.17783 -24.86998 -23.72315 -23.09022 -22.06298 -21.17017 -19.06952 -18.61119 -18.54987 -17.85706 -17.26103 -16.90731 -16.79237 -16.32941 -16.01132 -15.47300 -15.43985 -14.91241 -14.89469 -14.56578 -14.19762 -13.70698 -13.58885 -13.42005 -12.94741 -12.72345 -12.55466 -12.44424 -12.23811 -12.10462 -11.97151 -11.91907 -11.34218 -11.20031 -10.79123 -10.42554 -9.79628 -9.18290 -9.00531 -8.08076 -5.24644 0.41023 0.53630 1.40958 1.46960 1.57274 1.80649 1.92585 2.12708 2.48481 2.76478 2.96819 3.18442 3.49164 3.97826 4.15732 4.18433 4.36703 4.43883 4.50332 4.59562 4.65976 4.71181 4.78569 5.11962 5.14851 5.18514 5.48588 5.51099 5.57261 5.66781 5.70487 6.06754 6.12306 6.20217 6.60233 6.93260 7.36825 7.56099 7.71892 8.03287 9.03482 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019661 B = 0.005105 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.791940 B = 5483.893311 C = 6478.380686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.040 4.040 3 Si 0.954 3.046 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.077 0.923 9 N -0.562 5.562 10 C 0.186 3.814 11 C 0.490 3.510 12 O -0.558 6.558 13 O -0.530 6.530 14 C 0.134 3.866 15 C 0.484 3.516 16 O -0.544 6.544 17 N -0.669 5.669 18 C 0.132 3.868 19 C -0.148 4.148 20 C -0.101 4.101 21 C -0.142 4.142 22 C -0.115 4.115 23 C -0.155 4.155 24 H 0.254 0.746 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.403 0.597 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.425 0.575 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.986 -14.313 7.262 17.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.235 4.235 3 Si 0.782 3.218 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.385 4.385 8 H 0.095 0.905 9 N -0.280 5.280 10 C 0.057 3.943 11 C 0.332 3.668 12 O -0.448 6.448 13 O -0.341 6.341 14 C 0.004 3.996 15 C 0.271 3.729 16 O -0.419 6.419 17 N -0.317 5.317 18 C 0.037 3.963 19 C -0.168 4.168 20 C -0.120 4.120 21 C -0.160 4.160 22 C -0.134 4.134 23 C -0.175 4.175 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.262 0.738 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.263 0.737 31 H 0.169 0.831 32 H 0.175 0.825 33 H 0.165 0.835 34 H 0.147 0.853 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.209 -13.504 7.757 17.604 hybrid contribution -0.325 1.109 -1.147 1.628 sum 7.884 -12.395 6.610 16.108 Atomic orbital electron populations 1.70046 1.06146 1.26200 1.54121 1.25229 0.95778 1.00567 1.01948 0.85477 0.78458 0.80694 0.77128 1.21543 1.21483 1.20810 1.19325 1.00530 0.87659 1.30973 0.90530 1.43597 1.17595 1.06463 1.60365 1.20366 0.80935 1.02681 0.90362 1.25147 0.83010 0.69477 0.89215 1.90481 1.84805 1.46721 1.22807 1.84544 1.17777 1.83199 1.48576 1.20868 0.94078 0.88983 0.95705 1.23009 0.81824 0.80568 0.87526 1.90645 1.70531 1.38034 1.42718 1.43674 1.37034 1.26999 1.24038 1.18124 0.92554 0.94675 0.90949 1.21236 1.01614 0.95600 0.98370 1.21361 0.95791 0.99876 0.94925 1.21448 1.01433 0.91879 1.01265 1.21264 0.97276 0.99135 0.95702 1.21318 0.98336 0.98368 0.99483 0.93622 0.90013 0.89036 0.73843 0.88808 0.87799 0.73681 0.83128 0.82483 0.83450 0.85264 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.55 9.41 21.65 0.20 -52.35 16 2 C -0.04 -2.23 4.83 84.86 0.41 -1.82 16 3 Si 0.95 46.17 29.65 68.60 2.03 48.20 16 4 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.26 -13.99 9.64 84.03 0.81 -13.18 16 8 H 0.08 4.14 7.99 -2.91 -0.02 4.12 16 9 N -0.56 -27.25 1.53 -710.71 -1.09 -28.34 16 10 C 0.19 8.78 5.53 85.63 0.47 9.25 16 11 C 0.49 23.00 6.51 71.23 0.46 23.47 16 12 O -0.56 -29.34 17.20 21.95 0.38 -28.97 16 13 O -0.53 -20.86 13.42 -51.42 -0.69 -21.55 16 14 C 0.13 4.98 6.16 85.64 0.53 5.51 16 15 C 0.48 17.71 7.71 87.66 0.68 18.38 16 16 O -0.54 -25.11 13.86 -3.03 -0.04 -25.15 16 17 N -0.67 -18.22 5.34 -303.51 -1.62 -19.84 16 18 C 0.13 3.69 6.30 38.15 0.24 3.93 16 19 C -0.15 -3.03 9.97 22.39 0.22 -2.81 16 20 C -0.10 -1.79 10.04 22.25 0.22 -1.56 16 21 C -0.14 -2.79 10.04 22.29 0.22 -2.56 16 22 C -0.12 -2.97 10.04 22.25 0.22 -2.75 16 23 C -0.15 -5.00 8.70 22.39 0.19 -4.80 16 24 H 0.25 14.26 8.31 -92.71 -0.77 13.48 16 25 H 0.08 3.34 8.07 -2.39 -0.02 3.32 16 26 H 0.09 4.88 6.13 -2.39 -0.01 4.87 16 27 H 0.40 12.18 9.10 -74.06 -0.67 11.50 16 28 H 0.09 3.25 8.08 -2.39 -0.02 3.23 16 29 H 0.10 3.28 8.03 -2.39 -0.02 3.26 16 30 H 0.42 7.98 8.82 -92.70 -0.82 7.17 16 31 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 34 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.10 4.09 6.23 -2.91 -0.02 4.07 16 Total: -1.00 -76.02 310.19 3.51 -72.51 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.35 Total: 24.42 kcal Atomic # 6 Polarization: 26.38 SS G_CDS: 4.69 Total: 31.07 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -2.51 Total: -100.53 kcal Atomic # 8 Polarization: -75.32 SS G_CDS: -0.35 Total: -75.67 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -76.02 3.51 -72.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.540 kcal (2) G-P(sol) polarization free energy of solvation -76.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds