Wall clock time and date at job start Mon Mar 30 2020 23:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99747 * 2 1 4 4 H 1.48504 * 109.47036 * 275.19271 * 3 2 1 5 5 H 1.48491 * 109.47639 * 35.20066 * 3 2 1 6 6 H 1.48504 * 109.47195 * 155.20201 * 3 2 1 7 7 C 1.38812 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99963 * 336.12308 * 7 2 1 9 9 N 1.36936 * 120.00025 * 156.12607 * 7 2 1 10 10 C 1.46504 * 119.99641 * 323.01092 * 9 7 2 11 11 C 1.50706 * 109.46929 * 262.86208 * 10 9 7 12 12 O 1.20823 * 120.00103 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99751 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00107 * 143.01071 * 9 7 2 15 15 C 1.50696 * 109.47297 * 269.99674 * 14 9 7 16 16 C 1.38364 * 119.85098 * 89.99766 * 15 14 9 17 17 C 1.37960 * 120.14354 * 179.97438 * 16 15 14 18 18 C 1.39577 * 119.85019 * 0.02875 * 17 16 15 19 19 C 1.47852 * 120.13944 * 179.97438 * 18 17 16 20 20 N 1.34770 * 119.99588 * 179.97438 * 19 18 17 21 21 O 1.21553 * 119.99960 * 359.97438 * 19 18 17 22 22 C 1.39567 * 119.71396 * 0.24793 * 18 17 16 23 23 C 1.37965 * 119.85381 * 359.47211 * 22 18 17 24 24 H 0.97000 * 119.99822 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47508 * 22.86362 * 10 9 7 26 26 H 1.09003 * 109.47131 * 142.86712 * 10 9 7 27 27 H 0.96699 * 116.99697 * 180.02562 * 13 11 10 28 28 H 1.09004 * 109.46565 * 149.99792 * 14 9 7 29 29 H 1.09000 * 109.46832 * 30.00008 * 14 9 7 30 30 H 1.08000 * 119.92828 * 0.02685 * 16 15 14 31 31 H 1.08001 * 120.07325 * 180.02562 * 17 16 15 32 32 H 0.97001 * 120.00491 * 359.97438 * 20 19 18 33 33 H 0.97001 * 119.99955 * 179.72151 * 20 19 18 34 34 H 1.08004 * 120.07289 * 179.73045 * 22 18 17 35 35 H 1.07994 * 119.92676 * 180.26902 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3879 2.1098 -1.3944 5 1 1.5070 2.6185 0.8070 6 1 3.5984 1.4111 0.5872 7 6 2.0103 -1.2021 0.0005 8 1 1.5396 -2.0973 0.3795 9 7 3.2918 -1.2531 -0.4794 10 6 3.6721 -0.4434 -1.6397 11 6 3.6035 -1.2882 -2.8858 12 8 3.2707 -2.4473 -2.8124 13 8 3.9113 -0.7524 -4.0775 14 6 4.2824 -2.1172 0.1673 15 6 4.9883 -1.3469 1.2533 16 6 4.4825 -1.3519 2.5412 17 6 5.1241 -0.6492 3.5402 18 6 6.2855 0.0682 3.2491 19 6 6.9779 0.8239 4.3146 20 7 8.0994 1.5153 4.0304 21 8 6.5358 0.8217 5.4469 22 6 6.7870 0.0738 1.9467 23 6 6.1390 -0.6378 0.9581 24 1 -0.4850 0.8401 -0.0004 25 1 2.9880 0.3999 -1.7343 26 1 4.6888 -0.0735 -1.5070 27 1 3.8523 -1.3333 -4.8483 28 1 5.0099 -2.4524 -0.5720 29 1 3.7814 -2.9820 0.6022 30 1 3.5840 -1.9077 2.7652 31 1 4.7286 -0.6542 4.5452 32 1 8.4525 1.5167 3.1270 33 1 8.5515 2.0144 4.7286 34 1 7.6828 0.6305 1.7140 35 1 6.5285 -0.6379 -0.0491 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:46 Heat of formation + Delta-G solvation = -104.397919 kcal Electronic energy + Delta-G solvation = -21460.958590 eV Core-core repulsion = 18037.554210 eV Total energy + Delta-G solvation = -3423.404381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.16471 -40.91725 -39.44021 -37.57906 -36.64133 -34.91036 -34.01688 -32.44893 -31.78958 -29.51308 -27.94079 -24.91470 -23.58040 -23.32500 -22.14512 -21.19487 -19.14088 -19.02507 -18.95301 -17.85904 -17.65323 -17.00608 -16.45185 -16.27262 -16.03794 -15.91558 -15.75817 -15.59040 -14.78614 -14.62732 -14.38291 -14.20896 -14.01163 -13.49421 -13.09945 -12.91112 -12.53186 -12.48696 -12.33136 -12.13848 -11.80892 -11.78005 -11.44584 -11.17994 -10.75125 -10.72043 -9.85493 -9.70002 -9.02450 -8.26619 -5.67708 -0.09873 0.51772 1.26851 1.38636 1.47712 1.55228 1.84368 2.25880 2.37039 2.56015 2.89622 3.05798 3.39472 3.86523 3.91070 4.06574 4.13940 4.27856 4.40357 4.44537 4.55608 4.66817 4.72620 4.91793 5.03094 5.15083 5.33240 5.46743 5.71478 5.78485 5.86274 5.88799 6.02306 6.13234 6.42984 6.77965 7.22228 7.29750 7.48461 7.84883 8.92268 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018525 B = 0.005882 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.082694 B = 4759.443836 C = 5324.079710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.013 4.013 3 Si 0.923 3.077 4 H -0.261 1.261 5 H -0.312 1.312 6 H -0.238 1.238 7 C -0.259 4.259 8 H 0.040 0.960 9 N -0.575 5.575 10 C 0.133 3.867 11 C 0.452 3.548 12 O -0.542 6.542 13 O -0.519 6.519 14 C 0.181 3.819 15 C -0.066 4.066 16 C -0.122 4.122 17 C -0.077 4.077 18 C -0.167 4.167 19 C 0.565 3.435 20 N -0.826 5.826 21 O -0.594 6.594 22 C -0.074 4.074 23 C -0.125 4.125 24 H 0.265 0.735 25 H 0.084 0.916 26 H 0.126 0.874 27 H 0.416 0.584 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.418 0.582 33 H 0.413 0.587 34 H 0.169 0.831 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.902 3.466 -2.128 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.750 3.250 4 H -0.187 1.187 5 H -0.241 1.241 6 H -0.161 1.161 7 C -0.388 4.388 8 H 0.058 0.942 9 N -0.295 5.295 10 C 0.005 3.995 11 C 0.292 3.708 12 O -0.432 6.432 13 O -0.332 6.332 14 C 0.057 3.943 15 C -0.069 4.069 16 C -0.141 4.141 17 C -0.096 4.096 18 C -0.170 4.170 19 C 0.352 3.648 20 N -0.391 5.391 21 O -0.476 6.476 22 C -0.092 4.092 23 C -0.143 4.143 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.144 0.856 27 H 0.277 0.723 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.251 0.749 33 H 0.245 0.755 34 H 0.186 0.814 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 19.301 3.358 -1.136 19.624 hybrid contribution -0.592 0.326 -0.348 0.760 sum 18.709 3.684 -1.484 19.126 Atomic orbital electron populations 1.70023 1.07996 1.27793 1.52337 1.26102 0.95582 1.01286 0.98142 0.86145 0.80725 0.79926 0.78230 1.18718 1.24087 1.16099 1.18542 0.88433 0.93300 1.38558 0.94230 1.43814 1.07808 1.51636 1.26221 1.21281 1.03447 0.92856 0.81904 1.25760 0.71473 0.87620 0.85900 1.90629 1.44539 1.20655 1.87334 1.84574 1.81388 1.49026 1.18203 1.20093 0.90517 0.91576 0.92147 1.21082 0.94172 0.96947 0.94696 1.21072 0.99503 1.00310 0.93165 1.21247 0.94182 0.94800 0.99398 1.19905 0.98657 1.03530 0.94936 1.18418 0.80867 0.78442 0.87117 1.43499 1.26957 1.51915 1.16714 1.90774 1.67464 1.65203 1.24150 1.21571 0.99937 0.97251 0.90436 1.21311 0.94972 0.97264 1.00785 0.92570 0.89845 0.85646 0.72334 0.90112 0.92735 0.86739 0.86274 0.74925 0.75455 0.81370 0.82692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.25 13.97 21.65 0.30 -56.95 16 2 C -0.01 -0.75 5.23 84.86 0.44 -0.31 16 3 Si 0.92 42.11 25.15 68.60 1.73 43.84 16 4 H -0.26 -10.89 6.66 99.48 0.66 -10.23 16 5 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 6 H -0.24 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.26 -13.97 9.90 84.03 0.83 -13.14 16 8 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 9 N -0.57 -24.69 1.58 -710.66 -1.12 -25.81 16 10 C 0.13 4.94 4.87 85.63 0.42 5.36 16 11 C 0.45 16.37 8.38 71.24 0.60 16.97 16 12 O -0.54 -23.63 17.11 21.97 0.38 -23.25 16 13 O -0.52 -14.10 13.42 -51.39 -0.69 -14.79 16 14 C 0.18 6.42 5.70 85.63 0.49 6.90 16 15 C -0.07 -2.11 5.47 -19.81 -0.11 -2.22 16 16 C -0.12 -4.23 9.68 22.23 0.22 -4.01 16 17 C -0.08 -2.55 9.60 22.53 0.22 -2.33 16 18 C -0.17 -4.60 5.87 -20.09 -0.12 -4.71 16 19 C 0.56 14.98 8.05 86.79 0.70 15.68 16 20 N -0.83 -12.12 8.82 -175.60 -1.55 -13.67 16 21 O -0.59 -21.21 17.18 -3.88 -0.07 -21.28 16 22 C -0.07 -1.54 9.54 22.53 0.21 -1.32 16 23 C -0.12 -3.01 9.68 22.23 0.22 -2.79 16 24 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 25 H 0.08 3.42 3.69 -2.39 -0.01 3.41 16 26 H 0.13 3.49 8.12 -2.39 -0.02 3.47 16 27 H 0.42 7.48 9.10 -74.06 -0.67 6.80 16 28 H 0.08 2.44 8.01 -2.38 -0.02 2.42 16 29 H 0.05 2.09 7.98 -2.39 -0.02 2.07 16 30 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 31 H 0.12 4.06 7.65 -2.91 -0.02 4.04 16 32 H 0.42 3.15 6.86 -92.71 -0.64 2.51 16 33 H 0.41 4.78 8.93 -92.71 -0.83 3.95 16 34 H 0.17 1.76 6.41 -2.91 -0.02 1.74 16 35 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -79.53 309.32 2.07 -77.46 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -1.01 Total: 20.39 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 4.11 Total: 14.07 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -2.37 Total: -96.43 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -0.38 Total: -59.32 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.73 Total: 43.84 kcal Total: -79.53 2.07 -77.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.940 kcal (2) G-P(sol) polarization free energy of solvation -79.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds