Wall clock time and date at job start Mon Mar 30 2020 23:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99605 * 2 1 4 4 H 1.48497 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47057 * 299.99742 * 3 2 1 6 6 H 1.48500 * 109.47093 * 59.99807 * 3 2 1 7 7 C 1.38808 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00183 * 205.13525 * 7 2 1 9 9 N 1.36939 * 119.99839 * 25.13799 * 7 2 1 10 10 C 1.46493 * 120.00179 * 8.05787 * 9 7 2 11 11 C 1.50702 * 109.47508 * 270.40901 * 10 9 7 12 12 O 1.20822 * 119.99457 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00197 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99634 * 188.06235 * 9 7 2 15 15 C 1.50692 * 109.47243 * 89.99819 * 14 9 7 16 16 C 1.38382 * 119.92834 * 270.02235 * 15 14 9 17 17 C 1.38339 * 120.28862 * 180.02562 * 16 15 14 18 18 C 1.37972 * 120.14825 * 359.69685 * 17 16 15 19 19 C 1.39554 * 119.85468 * 0.53112 * 18 17 16 20 20 C 1.47846 * 120.14801 * 179.77349 * 19 18 17 21 21 N 1.34771 * 119.99778 * 359.71925 * 20 19 18 22 22 O 1.21555 * 119.99980 * 179.72491 * 20 19 18 23 23 C 1.37943 * 119.92675 * 89.99791 * 15 14 9 24 24 H 0.96994 * 120.00568 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47335 * 30.41466 * 10 9 7 26 26 H 1.09001 * 109.47071 * 150.40629 * 10 9 7 27 27 H 0.96700 * 116.99857 * 180.02562 * 13 11 10 28 28 H 1.08997 * 109.47248 * 329.99536 * 14 9 7 29 29 H 1.09001 * 109.46857 * 209.99976 * 14 9 7 30 30 H 1.07995 * 119.85283 * 359.97438 * 16 15 14 31 31 H 1.08004 * 119.92185 * 179.97438 * 17 16 15 32 32 H 1.08005 * 120.07520 * 180.27733 * 18 17 16 33 33 H 0.97003 * 120.00382 * 0.02562 * 21 20 19 34 34 H 0.97006 * 120.00156 * 179.73078 * 21 20 19 35 35 H 1.08002 * 120.07230 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0136 -1.2462 0.3978 9 7 1.4229 -2.3321 -0.5027 10 6 0.1378 -2.2412 -1.2000 11 6 -0.9849 -2.3939 -0.2064 12 8 -0.7369 -2.5611 0.9642 13 8 -2.2603 -2.3433 -0.6217 14 6 2.0797 -3.6320 -0.3437 15 6 1.6231 -4.2716 0.9421 16 6 2.3180 -4.0358 2.1153 17 6 1.9056 -4.6195 3.2998 18 6 0.7939 -5.4364 3.3195 19 6 0.0914 -5.6822 2.1390 20 6 -1.0979 -6.5605 2.1518 21 7 -1.5023 -7.1302 3.3042 22 8 -1.7107 -6.7687 1.1229 23 6 0.5130 -5.0904 0.9471 24 1 -0.4851 0.8399 -0.0004 25 1 0.0587 -1.2714 -1.6913 26 1 0.0726 -3.0328 -1.9465 27 1 -2.9459 -2.4460 0.0525 28 1 3.1603 -3.4921 -0.3162 29 1 1.8180 -4.2763 -1.1830 30 1 3.1864 -3.3939 2.1060 31 1 2.4526 -4.4318 4.2119 32 1 0.4704 -5.8879 4.2458 33 1 -1.0135 -6.9638 4.1254 34 1 -2.2849 -7.7034 3.3134 35 1 -0.0285 -5.2736 0.0307 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:47 Heat of formation + Delta-G solvation = -72.505886 kcal Electronic energy + Delta-G solvation = -22264.571953 eV Core-core repulsion = 18842.550514 eV Total energy + Delta-G solvation = -3422.021438 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.72411 -38.61542 -37.82406 -35.67584 -34.23897 -33.67586 -32.05494 -30.50648 -30.20825 -27.40503 -25.68094 -23.69833 -22.58549 -21.14291 -20.22721 -19.60796 -17.75616 -16.92018 -16.57856 -16.33666 -15.58965 -15.26922 -15.06980 -14.46572 -14.44401 -14.25917 -14.00874 -13.41638 -13.29899 -13.16867 -12.75241 -11.90710 -11.67110 -11.50234 -11.21796 -11.02567 -10.83848 -10.75324 -10.48484 -10.22014 -10.00605 -9.86510 -9.77233 -9.60945 -9.05807 -8.57152 -8.36972 -8.16205 -7.19041 -5.99061 -3.24298 1.37793 1.94996 3.24107 3.32401 3.40583 3.42698 3.69095 4.06504 4.28012 4.46003 4.63107 5.09621 5.17393 5.25440 5.36086 5.44896 5.68286 5.87670 5.96024 6.07029 6.33265 6.43144 6.46229 6.53073 6.73580 6.86227 6.90829 7.01247 7.07107 7.23499 7.45114 7.50997 7.63434 8.01802 8.08545 8.43086 8.95154 9.53348 9.69473 10.05120 11.11821 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021689 B = 0.006565 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.693997 B = 4264.260730 C = 4894.041388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.001 3.999 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.293 1.293 7 C -0.250 4.250 8 H 0.083 0.917 9 N -0.558 5.558 10 C 0.186 3.814 11 C 0.476 3.524 12 O -0.505 6.505 13 O -0.546 6.546 14 C 0.173 3.827 15 C -0.081 4.081 16 C -0.070 4.070 17 C -0.132 4.132 18 C -0.103 4.103 19 C -0.146 4.146 20 C 0.567 3.433 21 N -0.857 5.857 22 O -0.547 6.547 23 C -0.033 4.033 24 H 0.258 0.742 25 H 0.114 0.886 26 H 0.052 0.948 27 H 0.378 0.622 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.399 0.601 34 H 0.399 0.601 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 -10.306 4.229 11.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.197 4.197 3 Si 0.739 3.261 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.220 1.220 7 C -0.378 4.378 8 H 0.101 0.899 9 N -0.277 5.277 10 C 0.057 3.943 11 C 0.315 3.685 12 O -0.390 6.390 13 O -0.356 6.356 14 C 0.047 3.953 15 C -0.084 4.084 16 C -0.090 4.090 17 C -0.150 4.150 18 C -0.123 4.123 19 C -0.149 4.149 20 C 0.355 3.645 21 N -0.421 5.421 22 O -0.425 6.425 23 C -0.053 4.053 24 H 0.068 0.932 25 H 0.132 0.868 26 H 0.070 0.930 27 H 0.234 0.766 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.228 0.772 34 H 0.229 0.771 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.454 -10.147 3.464 10.820 hybrid contribution -0.563 0.952 1.522 1.881 sum 0.892 -9.195 4.986 10.498 Atomic orbital electron populations 1.69858 1.05304 1.25862 1.53313 1.24785 0.95210 0.98563 1.01184 0.86110 0.79297 0.83442 0.77253 1.20195 1.21402 1.22004 1.19342 0.96871 0.84842 1.36754 0.89887 1.44522 1.18347 1.02013 1.62768 1.20493 0.81027 1.02358 0.90453 1.25071 0.81855 0.70297 0.91262 1.90534 1.83718 1.45175 1.19549 1.84613 1.18587 1.86667 1.45746 1.20145 0.97254 0.86570 0.91329 1.20953 0.94949 0.93924 0.98621 1.21122 0.99246 0.96507 0.92090 1.20908 0.97406 0.98735 0.97995 1.20933 0.96027 0.99296 0.96010 1.19611 0.97209 1.02745 0.95372 1.18479 0.84064 0.78880 0.83071 1.43759 1.34086 1.53114 1.11106 1.90775 1.56933 1.62163 1.32618 1.20880 0.94377 0.93407 0.96635 0.93190 0.86822 0.93012 0.76622 0.91484 0.92670 0.86241 0.86503 0.87004 0.77151 0.77058 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.95 8.94 55.49 0.50 -24.45 16 2 C 0.00 0.02 4.90 -17.43 -0.09 -0.07 16 3 Si 0.91 20.97 29.62 -169.99 -5.04 15.94 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.25 -6.35 9.70 -15.06 -0.15 -6.50 16 8 H 0.08 2.05 7.93 -52.49 -0.42 1.63 16 9 N -0.56 -12.99 2.07 -175.99 -0.36 -13.35 16 10 C 0.19 4.31 5.59 -5.20 -0.03 4.28 16 11 C 0.48 11.65 6.17 36.01 0.22 11.88 16 12 O -0.50 -13.64 14.23 -18.75 -0.27 -13.91 16 13 O -0.55 -11.95 13.42 -39.24 -0.53 -12.47 16 14 C 0.17 3.35 5.83 -5.19 -0.03 3.32 16 15 C -0.08 -1.58 4.49 -104.68 -0.47 -2.05 16 16 C -0.07 -1.28 9.69 -39.49 -0.38 -1.66 16 17 C -0.13 -2.11 10.03 -39.64 -0.40 -2.50 16 18 C -0.10 -1.58 9.54 -39.19 -0.37 -1.96 16 19 C -0.15 -2.61 5.87 -104.97 -0.62 -3.23 16 20 C 0.57 9.66 8.05 -12.33 -0.10 9.56 16 21 N -0.86 -9.89 8.82 30.53 0.27 -9.62 16 22 O -0.55 -11.28 17.18 5.32 0.09 -11.19 16 23 C -0.03 -0.65 7.45 -39.18 -0.29 -0.95 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.11 2.84 6.30 -51.93 -0.33 2.51 16 26 H 0.05 1.04 7.89 -51.93 -0.41 0.63 16 27 H 0.38 6.99 9.10 45.56 0.41 7.40 16 28 H 0.07 1.19 7.97 -51.93 -0.41 0.77 16 29 H 0.05 0.95 7.83 -51.93 -0.41 0.55 16 30 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 31 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 32 H 0.11 1.26 6.41 -52.48 -0.34 0.93 16 33 H 0.40 3.49 6.86 -40.82 -0.28 3.21 16 34 H 0.40 3.83 8.93 -40.82 -0.36 3.47 16 35 H 0.12 2.43 7.65 -52.49 -0.40 2.03 16 LS Contribution 304.23 15.07 4.58 4.58 Total: -1.00 -34.02 304.23 -6.37 -40.40 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -2.92 Total: 13.95 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -2.70 Total: 10.12 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.40 Total: -47.42 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.70 Total: -37.57 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.04 Total: 15.94 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.02 -6.37 -40.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.109 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds