Wall clock time and date at job start Mon Mar 30 2020 23:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99605 * 2 1 4 4 H 1.48497 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47057 * 299.99742 * 3 2 1 6 6 H 1.48500 * 109.47093 * 59.99807 * 3 2 1 7 7 C 1.38808 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00183 * 205.13525 * 7 2 1 9 9 N 1.36939 * 119.99839 * 25.13799 * 7 2 1 10 10 C 1.46493 * 120.00179 * 8.05787 * 9 7 2 11 11 C 1.50702 * 109.47508 * 270.40901 * 10 9 7 12 12 O 1.20822 * 119.99457 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00197 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99634 * 188.06235 * 9 7 2 15 15 C 1.50692 * 109.47243 * 89.99819 * 14 9 7 16 16 C 1.38382 * 119.92834 * 270.02235 * 15 14 9 17 17 C 1.38339 * 120.28862 * 180.02562 * 16 15 14 18 18 C 1.37972 * 120.14825 * 359.69685 * 17 16 15 19 19 C 1.39554 * 119.85468 * 0.53112 * 18 17 16 20 20 C 1.47846 * 120.14801 * 179.77349 * 19 18 17 21 21 N 1.34771 * 119.99778 * 359.71925 * 20 19 18 22 22 O 1.21555 * 119.99980 * 179.72491 * 20 19 18 23 23 C 1.37943 * 119.92675 * 89.99791 * 15 14 9 24 24 H 0.96994 * 120.00568 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47335 * 30.41466 * 10 9 7 26 26 H 1.09001 * 109.47071 * 150.40629 * 10 9 7 27 27 H 0.96700 * 116.99857 * 180.02562 * 13 11 10 28 28 H 1.08997 * 109.47248 * 329.99536 * 14 9 7 29 29 H 1.09001 * 109.46857 * 209.99976 * 14 9 7 30 30 H 1.07995 * 119.85283 * 359.97438 * 16 15 14 31 31 H 1.08004 * 119.92185 * 179.97438 * 17 16 15 32 32 H 1.08005 * 120.07520 * 180.27733 * 18 17 16 33 33 H 0.97003 * 120.00382 * 0.02562 * 21 20 19 34 34 H 0.97006 * 120.00156 * 179.73078 * 21 20 19 35 35 H 1.08002 * 120.07230 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0136 -1.2462 0.3978 9 7 1.4229 -2.3321 -0.5027 10 6 0.1378 -2.2412 -1.2000 11 6 -0.9849 -2.3939 -0.2064 12 8 -0.7369 -2.5611 0.9642 13 8 -2.2603 -2.3433 -0.6217 14 6 2.0797 -3.6320 -0.3437 15 6 1.6231 -4.2716 0.9421 16 6 2.3180 -4.0358 2.1153 17 6 1.9056 -4.6195 3.2998 18 6 0.7939 -5.4364 3.3195 19 6 0.0914 -5.6822 2.1390 20 6 -1.0979 -6.5605 2.1518 21 7 -1.5023 -7.1302 3.3042 22 8 -1.7107 -6.7687 1.1229 23 6 0.5130 -5.0904 0.9471 24 1 -0.4851 0.8399 -0.0004 25 1 0.0587 -1.2714 -1.6913 26 1 0.0726 -3.0328 -1.9465 27 1 -2.9459 -2.4460 0.0525 28 1 3.1603 -3.4921 -0.3162 29 1 1.8180 -4.2763 -1.1830 30 1 3.1864 -3.3939 2.1060 31 1 2.4526 -4.4318 4.2119 32 1 0.4704 -5.8879 4.2458 33 1 -1.0135 -6.9638 4.1254 34 1 -2.2849 -7.7034 3.3134 35 1 -0.0285 -5.2736 0.0307 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:47 Heat of formation + Delta-G solvation = -97.605749 kcal Electronic energy + Delta-G solvation = -22265.660364 eV Core-core repulsion = 18842.550514 eV Total energy + Delta-G solvation = -3423.109850 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07161 -40.41735 -39.24810 -37.39339 -36.11442 -34.93453 -33.72792 -31.85535 -31.80043 -29.19689 -27.35460 -25.02966 -24.31689 -22.54653 -21.95680 -21.02437 -18.97828 -18.74348 -18.36236 -17.69939 -17.12463 -16.89756 -16.84550 -15.93678 -15.84594 -15.77701 -15.61686 -15.19794 -14.94235 -14.58749 -14.17623 -13.45274 -13.33292 -13.31495 -12.79368 -12.68430 -12.51468 -12.33415 -12.05856 -11.96562 -11.84450 -11.74646 -11.15544 -10.94382 -10.75730 -10.49457 -9.71886 -9.57898 -9.03355 -7.94469 -5.20389 0.03255 0.61143 1.49142 1.53132 1.62089 1.91821 2.17471 2.50677 2.56351 2.84306 3.03331 3.29078 3.72281 3.93111 4.00027 4.08617 4.30032 4.48694 4.56875 4.62107 4.77053 4.96823 5.08593 5.16902 5.19296 5.26848 5.41720 5.57445 5.66335 5.83841 5.86020 6.13796 6.19687 6.23382 6.41531 7.02421 7.28598 7.66433 7.85275 8.16733 9.15135 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021689 B = 0.006565 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.693997 B = 4264.260730 C = 4894.041388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.052 4.052 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.306 1.306 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.569 5.569 10 C 0.185 3.815 11 C 0.477 3.523 12 O -0.533 6.533 13 O -0.543 6.543 14 C 0.170 3.830 15 C -0.097 4.097 16 C -0.086 4.086 17 C -0.132 4.132 18 C -0.091 4.091 19 C -0.162 4.162 20 C 0.563 3.437 21 N -0.827 5.827 22 O -0.593 6.593 23 C -0.054 4.054 24 H 0.247 0.753 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.394 0.606 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.124 0.876 31 H 0.153 0.847 32 H 0.159 0.841 33 H 0.416 0.584 34 H 0.412 0.588 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 -11.326 6.053 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.219 1.219 6 H -0.235 1.235 7 C -0.375 4.375 8 H 0.106 0.894 9 N -0.288 5.288 10 C 0.056 3.944 11 C 0.317 3.683 12 O -0.420 6.420 13 O -0.355 6.355 14 C 0.045 3.955 15 C -0.100 4.100 16 C -0.105 4.105 17 C -0.150 4.150 18 C -0.110 4.110 19 C -0.165 4.165 20 C 0.350 3.650 21 N -0.392 5.392 22 O -0.475 6.475 23 C -0.074 4.074 24 H 0.057 0.943 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.251 0.749 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.142 0.858 31 H 0.170 0.830 32 H 0.176 0.824 33 H 0.249 0.751 34 H 0.245 0.755 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.347 -11.217 5.334 12.640 hybrid contribution -0.838 1.116 1.033 1.736 sum 1.509 -10.101 6.367 12.035 Atomic orbital electron populations 1.70005 1.06429 1.25432 1.55704 1.25434 0.95826 1.01128 1.02258 0.85189 0.78906 0.80024 0.76110 1.18719 1.21854 1.23473 1.19627 0.97058 0.85710 1.35086 0.89373 1.44571 1.18299 1.03093 1.62811 1.20458 0.81084 1.02128 0.90716 1.25303 0.82540 0.69389 0.91044 1.90499 1.84276 1.46620 1.20652 1.84561 1.18412 1.86234 1.46242 1.20303 0.97641 0.85264 0.92332 1.20874 0.95414 0.94840 0.98893 1.21376 0.99564 0.96955 0.92636 1.21349 0.97507 0.97664 0.98459 1.21425 0.94837 0.98019 0.96729 1.19865 0.97933 1.02937 0.95774 1.18502 0.83754 0.78982 0.83731 1.43472 1.34028 1.51513 1.10147 1.90753 1.58278 1.63938 1.34570 1.20816 0.94841 0.94828 0.96877 0.94318 0.88879 0.90359 0.74927 0.90070 0.91174 0.85787 0.82952 0.82375 0.75100 0.75540 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.44 8.94 21.65 0.19 -52.24 16 2 C -0.05 -2.76 4.90 84.86 0.42 -2.34 16 3 Si 0.97 43.50 29.62 68.60 2.03 45.53 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.31 -14.34 7.11 99.48 0.71 -13.63 16 7 C -0.25 -12.43 9.70 84.03 0.82 -11.61 16 8 H 0.09 4.27 7.93 -2.91 -0.02 4.25 16 9 N -0.57 -26.42 2.07 -710.70 -1.47 -27.89 16 10 C 0.19 8.69 5.59 85.64 0.48 9.16 16 11 C 0.48 23.61 6.17 71.24 0.44 24.05 16 12 O -0.53 -29.06 14.23 21.98 0.31 -28.75 16 13 O -0.54 -23.94 13.42 -51.36 -0.69 -24.63 16 14 C 0.17 6.49 5.83 85.63 0.50 6.99 16 15 C -0.10 -3.74 4.49 -19.90 -0.09 -3.83 16 16 C -0.09 -2.98 9.69 22.33 0.22 -2.77 16 17 C -0.13 -3.77 10.03 22.23 0.22 -3.54 16 18 C -0.09 -2.48 9.54 22.52 0.21 -2.27 16 19 C -0.16 -5.55 5.87 -20.09 -0.12 -5.66 16 20 C 0.56 18.40 8.05 86.79 0.70 19.10 16 21 N -0.83 -16.61 8.82 -175.61 -1.55 -18.16 16 22 O -0.59 -24.57 17.18 -3.89 -0.07 -24.63 16 23 C -0.05 -2.12 7.45 22.53 0.17 -1.95 16 24 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 25 H 0.09 4.76 6.30 -2.39 -0.02 4.75 16 26 H 0.08 3.16 7.89 -2.39 -0.02 3.14 16 27 H 0.39 14.55 9.10 -74.06 -0.67 13.87 16 28 H 0.08 2.80 7.97 -2.39 -0.02 2.79 16 29 H 0.07 2.41 7.83 -2.39 -0.02 2.39 16 30 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 31 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.16 2.70 6.41 -2.91 -0.02 2.68 16 33 H 0.42 5.47 6.86 -92.71 -0.64 4.84 16 34 H 0.41 6.72 8.93 -92.70 -0.83 5.90 16 35 H 0.10 4.10 7.65 -2.91 -0.02 4.08 16 Total: -1.00 -74.52 304.23 1.75 -72.77 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -0.97 Total: 32.67 kcal Atomic # 6 Polarization: 21.37 SS G_CDS: 3.96 Total: 25.34 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -2.83 Total: -98.29 kcal Atomic # 8 Polarization: -77.57 SS G_CDS: -0.44 Total: -78.01 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -74.52 1.75 -72.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.840 kcal (2) G-P(sol) polarization free energy of solvation -74.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds