Wall clock time and date at job start Mon Mar 30 2020 23:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00190 * 2 1 4 4 H 1.48499 * 109.47136 * 269.99619 * 3 2 1 5 5 H 1.48500 * 109.46954 * 29.99721 * 3 2 1 6 6 H 1.48499 * 109.47078 * 149.99907 * 3 2 1 7 7 C 1.37875 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00065 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99923 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27942 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.38394 * 119.92057 * 269.71839 * 15 14 13 17 17 C 1.38353 * 120.29844 * 179.72432 * 16 15 14 18 18 C 1.37967 * 120.14764 * 0.55850 * 17 16 15 19 19 C 1.39599 * 119.85031 * 359.72273 * 18 17 16 20 20 C 1.47727 * 120.15213 * 180.02562 * 19 18 17 21 21 O 1.21476 * 120.00378 * 179.97438 * 20 19 18 22 22 O 1.34716 * 119.99573 * 359.97438 * 20 19 18 23 23 C 1.37921 * 119.92517 * 90.00171 * 15 14 13 24 24 H 0.96997 * 119.99506 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47088 * 59.99370 * 9 7 2 26 26 H 1.09006 * 109.46998 * 299.99569 * 9 7 2 27 27 H 0.97000 * 120.00386 * 0.02562 * 10 9 7 28 28 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 29 29 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 30 30 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 31 31 H 1.07994 * 119.84757 * 0.02562 * 16 15 14 32 32 H 1.07995 * 119.92371 * 180.26246 * 17 16 15 33 33 H 1.08003 * 120.07111 * 179.74479 * 18 17 16 34 34 H 0.96704 * 116.99291 * 180.02562 * 22 20 19 35 35 H 1.08000 * 120.07676 * 359.97313 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5581 -5.1056 0.0011 13 7 2.6294 -5.9079 0.0016 14 6 2.1410 -7.2890 -0.0040 15 6 3.3131 -8.2362 -0.0090 16 6 3.8454 -8.6695 -1.2108 17 6 4.9250 -9.5346 -1.2246 18 6 5.4709 -9.9802 -0.0385 19 6 4.9352 -9.5517 1.1774 20 6 5.5150 -10.0242 2.4513 21 8 5.0470 -9.6493 3.5077 22 8 6.5627 -10.8710 2.4414 23 6 3.8491 -8.6739 1.1840 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 3.1566 -3.4356 0.0009 28 1 3.5831 -5.7306 0.0012 29 1 1.5361 -7.4641 0.8857 30 1 1.5347 -7.4565 -0.8942 31 1 3.4191 -8.3269 -2.1421 32 1 5.3382 -9.8655 -2.1658 33 1 6.3111 -10.6588 -0.0506 34 1 6.9074 -11.1528 3.2999 35 1 3.4301 -8.3382 2.1211 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840990394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:02 Heat of formation + Delta-G solvation = -102.351628 kcal Electronic energy + Delta-G solvation = -19986.021026 eV Core-core repulsion = 16562.705380 eV Total energy + Delta-G solvation = -3423.315647 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.79242 -39.54290 -38.76959 -36.44425 -34.92821 -33.99665 -32.38228 -31.70909 -31.35183 -27.47776 -25.73753 -25.13724 -22.62138 -22.03534 -21.22499 -20.18575 -18.44965 -18.11381 -17.55372 -16.35245 -16.08079 -15.98054 -15.72473 -15.66548 -14.76816 -14.62540 -14.51049 -13.81023 -13.66606 -13.38177 -12.91594 -12.82250 -12.79530 -12.01778 -11.93996 -11.92578 -11.67210 -11.41777 -10.96306 -10.93439 -10.86621 -10.28654 -9.62119 -9.44656 -9.35266 -9.16406 -8.79831 -8.67169 -7.74580 -6.13568 -4.20020 0.30187 0.88000 2.16643 2.61119 3.20924 3.26153 3.32364 3.35006 3.65812 3.95236 4.31517 4.35211 4.46409 4.58945 4.77272 4.90084 4.98134 5.14936 5.22546 5.35998 5.47825 5.60786 5.79572 5.85470 5.95418 6.07519 6.20366 6.41871 6.80322 7.12548 7.51188 7.53022 7.56759 7.59332 7.92057 8.05911 8.78298 8.95275 9.34220 9.49582 10.96735 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025977 B = 0.002875 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.631838 B = 9735.436279 C =10080.640032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.693 3.307 12 O -0.600 6.600 13 N -0.755 5.755 14 C 0.182 3.818 15 C -0.112 4.112 16 C -0.061 4.061 17 C -0.136 4.136 18 C -0.057 4.057 19 C -0.133 4.133 20 C 0.527 3.473 21 O -0.510 6.510 22 O -0.514 6.514 23 C -0.034 4.034 24 H 0.266 0.734 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.386 0.614 28 H 0.392 0.608 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.415 0.585 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.292 -22.263 -0.861 26.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.381 5.381 11 C 0.393 3.607 12 O -0.479 6.479 13 N -0.413 5.413 14 C 0.057 3.943 15 C -0.112 4.112 16 C -0.080 4.080 17 C -0.154 4.154 18 C -0.076 4.076 19 C -0.135 4.135 20 C 0.371 3.629 21 O -0.399 6.399 22 O -0.326 6.326 23 C -0.053 4.053 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.219 0.781 28 H 0.225 0.775 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.274 0.726 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.674 -22.056 -0.941 25.456 hybrid contribution 1.595 0.854 0.588 1.903 sum 14.269 -21.203 -0.353 25.559 Atomic orbital electron populations 1.69983 1.06085 1.27250 1.48997 1.24947 0.94917 0.99397 0.94791 0.86410 0.79611 0.82671 0.78169 1.20501 1.21019 1.19777 1.21232 0.93268 0.90454 1.53049 0.91959 1.18988 0.87778 0.81041 0.97635 1.45718 1.10814 1.04373 1.77153 1.16141 0.85138 0.81035 0.78403 1.90880 1.14186 1.84207 1.58665 1.45182 1.08957 1.04514 1.82655 1.19905 0.92159 0.78824 1.03366 1.19967 0.98736 0.99768 0.92744 1.21506 0.94209 0.94107 0.98137 1.21196 0.97063 0.98766 0.98337 1.21497 0.98097 0.96795 0.91181 1.19010 1.00030 1.03681 0.90735 1.20908 0.77135 0.75399 0.89464 1.90926 1.60353 1.55425 1.33203 1.84542 1.46668 1.60229 1.41144 1.21276 0.92391 0.92503 0.99123 0.92471 0.95718 0.95703 0.78148 0.77465 0.90735 0.90637 0.84747 0.84805 0.84410 0.72633 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.20 5.43 -5.19 -0.03 7.17 16 10 N -0.73 -15.71 5.55 -66.41 -0.37 -16.07 16 11 C 0.69 14.30 8.57 -86.92 -0.74 13.56 16 12 O -0.60 -15.01 16.34 5.28 0.09 -14.92 16 13 N -0.76 -11.13 5.55 -66.41 -0.37 -11.50 16 14 C 0.18 2.28 5.79 -5.19 -0.03 2.25 16 15 C -0.11 -1.10 5.24 -104.68 -0.55 -1.64 16 16 C -0.06 -0.49 9.69 -39.48 -0.38 -0.87 16 17 C -0.14 -0.92 10.03 -39.64 -0.40 -1.31 16 18 C -0.06 -0.42 9.62 -39.17 -0.38 -0.80 16 19 C -0.13 -1.26 5.87 -104.98 -0.62 -1.87 16 20 C 0.53 5.18 8.27 34.61 0.29 5.47 16 21 O -0.51 -6.69 17.13 -19.25 -0.33 -7.02 16 22 O -0.51 -3.33 12.68 -40.54 -0.51 -3.84 16 23 C -0.03 -0.35 9.24 -39.17 -0.36 -0.71 16 24 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.39 7.13 8.34 -40.82 -0.34 6.78 16 28 H 0.39 4.77 8.48 -40.82 -0.35 4.43 16 29 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 30 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 33 H 0.14 0.77 7.61 -52.48 -0.40 0.37 16 34 H 0.41 0.93 9.11 45.56 0.42 1.34 16 35 H 0.14 1.56 7.65 -52.49 -0.40 1.16 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -35.89 319.56 -7.72 -43.61 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -3.14 Total: 6.82 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -3.62 Total: 7.73 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.00 Total: -53.17 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.76 Total: -25.78 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.89 -7.72 -43.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840990394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.746 kcal (2) G-P(sol) polarization free energy of solvation -35.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds