Wall clock time and date at job start Mon Mar 30 2020 23:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86796 * 120.00147 * 2 1 4 4 H 1.48500 * 109.47099 * 269.99691 * 3 2 1 5 5 H 1.48494 * 109.47318 * 29.99830 * 3 2 1 6 6 H 1.48503 * 109.47238 * 150.00266 * 3 2 1 7 7 C 1.37879 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00206 * 185.82619 * 7 2 1 9 9 C 1.50702 * 119.99771 * 5.83132 * 7 2 1 10 10 C 1.53003 * 115.54961 * 279.39578 * 9 7 2 11 11 O 1.42901 * 109.47011 * 295.16730 * 10 9 7 12 12 C 1.36004 * 116.99769 * 179.97438 * 11 10 9 13 13 C 1.38728 * 119.97824 * 359.72659 * 12 11 10 14 14 C 1.38092 * 120.01472 * 179.76356 * 13 12 11 15 15 C 1.38888 * 119.98011 * 0.53098 * 14 13 12 16 16 N 1.39929 * 120.01714 * 179.69748 * 15 14 13 17 17 C 1.38833 * 119.96143 * 359.72706 * 15 14 13 18 18 N 1.48014 * 120.00886 * 180.02562 * 17 15 14 19 19 O 1.21803 * 119.99787 * 185.92102 * 18 17 15 20 20 O 1.21798 * 119.99808 * 5.92367 * 18 17 15 21 21 C 1.38139 * 119.98338 * 359.97438 * 17 15 14 22 22 C 1.53004 * 117.50045 * 133.69346 * 9 7 2 23 23 C 1.52999 * 117.50076 * 65.06966 * 9 7 2 24 24 H 0.97001 * 120.00024 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46932 * 55.16274 * 10 9 7 26 26 H 1.08991 * 109.47236 * 175.16693 * 10 9 7 27 27 H 1.07993 * 119.99128 * 359.97438 * 13 12 11 28 28 H 1.07997 * 120.00996 * 180.23282 * 14 13 12 29 29 H 0.96999 * 120.00397 * 201.55251 * 16 15 14 30 30 H 0.97007 * 120.00211 * 21.55974 * 16 15 14 31 31 H 1.08002 * 119.98991 * 180.02562 * 21 17 15 32 32 H 1.09001 * 117.49653 * 359.97438 * 22 9 7 33 33 H 1.08995 * 117.50143 * 145.02125 * 22 9 7 34 34 H 1.09002 * 117.49375 * 214.97726 * 23 9 7 35 35 H 1.08994 * 117.49883 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0802 -1.1965 0.0955 9 6 1.2567 -2.4958 -0.1315 10 6 0.6148 -3.0215 1.1541 11 8 1.6368 -3.3437 2.0995 12 6 1.2327 -3.8274 3.3047 13 6 -0.1199 -3.9822 3.5713 14 6 -0.5309 -4.4778 4.7929 15 6 0.4099 -4.8109 5.7588 16 7 -0.0059 -5.3073 6.9992 17 6 1.7631 -4.6507 5.4930 18 7 2.7667 -5.0059 6.5213 19 8 3.9454 -4.7654 6.3306 20 8 2.4138 -5.5389 7.5581 21 6 2.1728 -4.1606 4.2681 22 6 1.8023 -3.5267 -1.1218 23 6 0.5204 -2.7574 -1.4469 24 1 -0.4850 0.8400 0.0004 25 1 -0.0392 -2.2565 1.5727 26 1 0.0321 -3.9149 0.9302 27 1 -0.8515 -3.7182 2.8220 28 1 -1.5837 -4.6018 4.9990 29 1 0.5832 -5.2480 7.7676 30 1 -0.8833 -5.7108 7.0908 31 1 3.2254 -4.0362 4.0611 32 1 2.7019 -3.2631 -1.6781 33 1 1.7041 -4.5796 -0.8575 34 1 -0.4212 -3.3042 -1.3964 35 1 0.5764 -1.9877 -2.2166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853661973.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:56 Heat of formation + Delta-G solvation = 15.134139 kcal Electronic energy + Delta-G solvation = -21124.731974 eV Core-core repulsion = 17706.510892 eV Total energy + Delta-G solvation = -3418.221082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.11398 -39.97233 -37.95312 -36.61324 -36.08856 -33.84317 -32.06332 -31.82103 -28.87033 -26.57835 -26.12150 -25.28525 -22.89015 -22.02567 -21.24915 -19.48923 -19.01874 -18.56738 -17.57972 -17.20321 -17.03000 -16.55889 -16.15794 -15.18851 -14.98694 -14.57687 -14.19544 -13.97905 -13.22482 -13.09560 -12.92954 -12.63891 -11.83803 -11.46658 -11.36885 -11.23861 -11.09029 -11.05610 -10.98568 -10.72343 -10.56375 -10.34872 -9.79215 -9.70667 -9.54179 -8.95119 -8.57519 -8.32153 -7.46970 -6.16730 -4.20600 0.01484 1.27441 1.51853 1.55356 3.24512 3.31861 3.36428 3.46886 3.51775 3.71676 4.33672 4.42278 4.84763 4.86685 5.08150 5.13769 5.23752 5.48918 5.62871 5.74817 5.81953 6.04650 6.07462 6.15014 6.23417 6.42913 6.49268 6.60534 6.64181 6.89809 7.06802 7.22358 7.30136 7.53334 7.79075 7.80998 7.90911 8.29454 8.81431 9.45939 10.93074 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021089 B = 0.004424 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.392812 B = 6328.040373 C = 6665.095092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.070 3.930 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.487 4.487 8 H 0.064 0.936 9 C 0.040 3.960 10 C 0.102 3.898 11 O -0.288 6.288 12 C 0.108 3.892 13 C -0.110 4.110 14 C -0.155 4.155 15 C 0.235 3.765 16 N -0.863 5.863 17 C -0.082 4.082 18 N 0.053 4.947 19 O -0.164 6.164 20 O -0.199 6.199 21 C -0.070 4.070 22 C -0.203 4.203 23 C -0.150 4.150 24 H 0.261 0.739 25 H 0.074 0.926 26 H 0.032 0.968 27 H 0.149 0.851 28 H 0.144 0.856 29 H 0.412 0.588 30 H 0.400 0.600 31 H 0.158 0.842 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 -9.203 8.774 13.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.133 4.133 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.525 4.525 8 H 0.082 0.918 9 C 0.040 3.960 10 C 0.028 3.972 11 O -0.200 6.200 12 C 0.058 3.942 13 C -0.130 4.130 14 C -0.178 4.178 15 C 0.126 3.874 16 N -0.414 5.414 17 C -0.172 4.172 18 N 0.562 4.438 19 O -0.380 6.380 20 O -0.401 6.401 21 C -0.090 4.090 22 C -0.241 4.241 23 C -0.188 4.188 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.050 0.950 27 H 0.166 0.834 28 H 0.162 0.838 29 H 0.250 0.750 30 H 0.229 0.771 31 H 0.176 0.824 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.337 -8.876 8.266 12.881 hybrid contribution 0.163 0.758 0.504 0.925 sum -4.174 -8.118 8.770 12.659 Atomic orbital electron populations 1.69955 1.05927 1.26786 1.49572 1.24974 0.94867 0.99089 0.94354 0.86580 0.80113 0.83106 0.78238 1.20521 1.21231 1.19636 1.20409 0.93122 0.88259 1.50682 0.91815 1.18707 0.98449 0.94113 0.84740 1.22709 0.88701 0.96686 0.89122 1.86271 1.36826 1.76787 1.20132 1.18616 0.91061 0.96437 0.88044 1.21693 0.95766 0.97755 0.97769 1.20564 0.98824 1.05021 0.93367 1.17309 0.89188 0.92805 0.88061 1.43129 1.22399 1.67373 1.08471 1.20213 0.86137 1.19465 0.91415 1.43374 1.01882 0.97545 1.00965 1.94547 1.01163 1.57624 1.84672 1.94241 1.84865 1.44452 1.16515 1.19844 1.01848 0.98288 0.89010 1.22976 0.97954 0.95720 1.07401 1.22588 0.93186 1.01643 1.01363 0.92901 0.90758 0.95033 0.83375 0.83828 0.74990 0.77060 0.82439 0.90011 0.91403 0.91656 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.62 13.11 55.43 0.73 -22.90 16 2 C 0.07 1.84 5.42 -17.82 -0.10 1.74 16 3 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.49 -12.78 8.74 -34.44 -0.30 -13.08 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.04 0.94 1.53 -155.66 -0.24 0.70 16 10 C 0.10 2.11 4.56 37.16 0.17 2.28 16 11 O -0.29 -5.83 10.06 -19.75 -0.20 -6.03 16 12 C 0.11 1.81 6.69 -39.24 -0.26 1.55 16 13 C -0.11 -1.54 9.03 -39.45 -0.36 -1.89 16 14 C -0.15 -1.79 9.93 -39.39 -0.39 -2.19 16 15 C 0.24 2.97 6.74 -83.70 -0.56 2.41 16 16 N -0.86 -8.49 8.60 32.44 0.28 -8.21 16 17 C -0.08 -1.23 6.86 -79.77 -0.55 -1.78 16 18 N 0.05 0.83 4.45 34.05 0.15 0.98 16 19 O -0.16 -2.79 18.46 -29.46 -0.54 -3.33 16 20 O -0.20 -2.98 15.82 -29.46 -0.47 -3.44 16 21 C -0.07 -1.12 9.49 -39.46 -0.37 -1.49 16 22 C -0.20 -4.18 9.96 -26.73 -0.27 -4.45 16 23 C -0.15 -3.23 9.68 -26.73 -0.26 -3.49 16 24 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 25 H 0.07 1.64 7.65 -51.93 -0.40 1.24 16 26 H 0.03 0.57 7.62 -51.93 -0.40 0.17 16 27 H 0.15 1.94 6.29 -52.49 -0.33 1.61 16 28 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.41 4.27 5.91 -40.82 -0.24 4.03 16 30 H 0.40 2.68 8.90 -40.82 -0.36 2.32 16 31 H 0.16 2.51 7.62 -52.49 -0.40 2.11 16 32 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 LS Contribution 310.73 15.07 4.68 4.68 Total: -1.00 -28.35 310.73 -7.66 -36.01 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -3.79 Total: 6.35 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -3.49 Total: -19.69 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 1.16 Total: -30.12 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -1.21 Total: -12.81 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.35 -7.66 -36.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853661973.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.146 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds