Wall clock time and date at job start Mon Mar 30 2020 23:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86796 * 120.00147 * 2 1 4 4 H 1.48500 * 109.47099 * 269.99691 * 3 2 1 5 5 H 1.48494 * 109.47318 * 29.99830 * 3 2 1 6 6 H 1.48503 * 109.47238 * 150.00266 * 3 2 1 7 7 C 1.37879 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00206 * 185.82619 * 7 2 1 9 9 C 1.50702 * 119.99771 * 5.83132 * 7 2 1 10 10 C 1.53003 * 115.54961 * 279.39578 * 9 7 2 11 11 O 1.42901 * 109.47011 * 295.16730 * 10 9 7 12 12 C 1.36004 * 116.99769 * 179.97438 * 11 10 9 13 13 C 1.38728 * 119.97824 * 359.72659 * 12 11 10 14 14 C 1.38092 * 120.01472 * 179.76356 * 13 12 11 15 15 C 1.38888 * 119.98011 * 0.53098 * 14 13 12 16 16 N 1.39929 * 120.01714 * 179.69748 * 15 14 13 17 17 C 1.38833 * 119.96143 * 359.72706 * 15 14 13 18 18 N 1.48014 * 120.00886 * 180.02562 * 17 15 14 19 19 O 1.21803 * 119.99787 * 185.92102 * 18 17 15 20 20 O 1.21798 * 119.99808 * 5.92367 * 18 17 15 21 21 C 1.38139 * 119.98338 * 359.97438 * 17 15 14 22 22 C 1.53004 * 117.50045 * 133.69346 * 9 7 2 23 23 C 1.52999 * 117.50076 * 65.06966 * 9 7 2 24 24 H 0.97001 * 120.00024 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46932 * 55.16274 * 10 9 7 26 26 H 1.08991 * 109.47236 * 175.16693 * 10 9 7 27 27 H 1.07993 * 119.99128 * 359.97438 * 13 12 11 28 28 H 1.07997 * 120.00996 * 180.23282 * 14 13 12 29 29 H 0.96999 * 120.00397 * 201.55251 * 16 15 14 30 30 H 0.97007 * 120.00211 * 21.55974 * 16 15 14 31 31 H 1.08002 * 119.98991 * 180.02562 * 21 17 15 32 32 H 1.09001 * 117.49653 * 359.97438 * 22 9 7 33 33 H 1.08995 * 117.50143 * 145.02125 * 22 9 7 34 34 H 1.09002 * 117.49375 * 214.97726 * 23 9 7 35 35 H 1.08994 * 117.49883 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0802 -1.1965 0.0955 9 6 1.2567 -2.4958 -0.1315 10 6 0.6148 -3.0215 1.1541 11 8 1.6368 -3.3437 2.0995 12 6 1.2327 -3.8274 3.3047 13 6 -0.1199 -3.9822 3.5713 14 6 -0.5309 -4.4778 4.7929 15 6 0.4099 -4.8109 5.7588 16 7 -0.0059 -5.3073 6.9992 17 6 1.7631 -4.6507 5.4930 18 7 2.7667 -5.0059 6.5213 19 8 3.9454 -4.7654 6.3306 20 8 2.4138 -5.5389 7.5581 21 6 2.1728 -4.1606 4.2681 22 6 1.8023 -3.5267 -1.1218 23 6 0.5204 -2.7574 -1.4469 24 1 -0.4850 0.8400 0.0004 25 1 -0.0392 -2.2565 1.5727 26 1 0.0321 -3.9149 0.9302 27 1 -0.8515 -3.7182 2.8220 28 1 -1.5837 -4.6018 4.9990 29 1 0.5832 -5.2480 7.7676 30 1 -0.8833 -5.7108 7.0908 31 1 3.2254 -4.0362 4.0611 32 1 2.7019 -3.2631 -1.6781 33 1 1.7041 -4.5796 -0.8575 34 1 -0.4212 -3.3042 -1.3964 35 1 0.5764 -1.9877 -2.2166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853661973.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:55 Heat of formation + Delta-G solvation = -0.985784 kcal Electronic energy + Delta-G solvation = -21125.430986 eV Core-core repulsion = 17706.510892 eV Total energy + Delta-G solvation = -3418.920094 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.31407 -41.19959 -39.29748 -37.93312 -37.57694 -34.93511 -34.02980 -32.92707 -30.08027 -28.12194 -27.41214 -27.02754 -24.00656 -23.24891 -22.89298 -21.18352 -20.30236 -19.79399 -18.77524 -18.41042 -18.24403 -17.81291 -17.64641 -16.85060 -16.34147 -16.25428 -15.51533 -15.19461 -14.72539 -14.35985 -14.16093 -13.92070 -13.58450 -13.08216 -12.89170 -12.67760 -12.64376 -12.47669 -12.33322 -12.32195 -12.12240 -11.97936 -11.44903 -11.05075 -10.72134 -10.61137 -10.48819 -10.06451 -8.58272 -8.15222 -6.23107 -1.16182 0.18965 0.34157 0.38723 1.39073 1.42082 1.50526 2.28406 2.35375 2.42401 2.63873 3.14877 3.37880 3.51151 3.73782 3.83610 3.97047 4.21212 4.36781 4.44753 4.50380 4.54732 4.68466 4.74291 4.85912 4.98852 5.05470 5.13284 5.21412 5.42317 5.54500 5.60686 5.76167 6.14359 6.36101 6.55108 6.59099 6.79153 6.79539 7.44647 8.93424 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021089 B = 0.004424 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.392812 B = 6328.040373 C = 6665.095092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.033 3.967 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.505 4.505 8 H 0.043 0.957 9 C 0.004 3.996 10 C 0.117 3.883 11 O -0.318 6.318 12 C 0.079 3.921 13 C -0.103 4.103 14 C -0.135 4.135 15 C 0.251 3.749 16 N -0.842 5.842 17 C -0.101 4.101 18 N 0.054 4.946 19 O -0.223 6.223 20 O -0.169 6.169 21 C -0.084 4.084 22 C -0.187 4.187 23 C -0.145 4.145 24 H 0.262 0.738 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.160 0.840 28 H 0.190 0.810 29 H 0.413 0.587 30 H 0.421 0.579 31 H 0.142 0.858 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.307 -10.380 9.951 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.168 4.168 3 Si 0.767 3.233 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.004 3.996 10 C 0.042 3.958 11 O -0.231 6.231 12 C 0.031 3.969 13 C -0.123 4.123 14 C -0.157 4.157 15 C 0.139 3.861 16 N -0.392 5.392 17 C -0.192 4.192 18 N 0.560 4.440 19 O -0.423 6.423 20 O -0.380 6.380 21 C -0.104 4.104 22 C -0.224 4.224 23 C -0.183 4.183 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.177 0.823 28 H 0.208 0.792 29 H 0.251 0.749 30 H 0.254 0.746 31 H 0.160 0.840 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.613 -10.039 9.420 15.272 hybrid contribution 0.755 1.021 0.304 1.306 sum -5.858 -9.018 9.724 14.498 Atomic orbital electron populations 1.70013 1.06541 1.27227 1.50261 1.25505 0.95617 1.01339 0.94354 0.85822 0.78851 0.80323 0.78275 1.19970 1.20732 1.20223 1.20599 0.92531 0.90361 1.50760 0.93860 1.18880 0.99991 0.94091 0.86671 1.22359 0.88258 0.97122 0.88030 1.86191 1.37313 1.78007 1.21607 1.18775 0.92619 0.98344 0.87180 1.21872 0.94429 0.96993 0.98986 1.20991 1.00633 1.02563 0.91531 1.17505 0.88232 0.91269 0.89070 1.43167 1.23326 1.65565 1.07177 1.20292 0.86823 1.21078 0.90997 1.43506 1.01926 0.97460 1.01154 1.94564 1.01935 1.60399 1.85451 1.94193 1.84711 1.42756 1.16324 1.19719 1.01274 0.99583 0.89829 1.22979 0.97294 0.96512 1.05591 1.22521 0.94574 1.01421 0.99735 0.92887 0.92830 0.92181 0.82280 0.79247 0.74939 0.74642 0.84017 0.90599 0.88889 0.89378 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.42 13.11 21.45 0.28 -48.14 16 2 C 0.03 1.73 5.42 84.66 0.46 2.19 16 3 Si 0.94 42.83 29.54 68.60 2.03 44.86 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.50 -27.12 8.74 25.60 0.22 -26.90 16 8 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 9 C 0.00 0.19 1.53 -52.93 -0.08 0.11 16 10 C 0.12 4.78 4.56 71.98 0.33 5.10 16 11 O -0.32 -13.08 10.06 -93.60 -0.94 -14.03 16 12 C 0.08 2.65 6.69 22.49 0.15 2.80 16 13 C -0.10 -2.62 9.03 22.35 0.20 -2.42 16 14 C -0.14 -2.54 9.93 22.39 0.22 -2.32 16 15 C 0.25 5.50 6.74 38.15 0.26 5.75 16 16 N -0.84 -12.87 8.60 -51.27 -0.44 -13.31 16 17 C -0.10 -2.93 6.86 36.50 0.25 -2.68 16 18 N 0.05 1.71 4.45 -46.18 -0.21 1.51 16 19 O -0.22 -7.94 18.46 18.88 0.35 -7.59 16 20 O -0.17 -4.75 15.82 18.89 0.30 -4.45 16 21 C -0.08 -2.75 9.49 22.35 0.21 -2.53 16 22 C -0.19 -7.54 9.96 30.60 0.30 -7.24 16 23 C -0.14 -6.14 9.68 30.59 0.30 -5.84 16 24 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 25 H 0.05 2.36 7.65 -2.39 -0.02 2.34 16 26 H 0.06 2.05 7.62 -2.39 -0.02 2.03 16 27 H 0.16 3.71 6.29 -2.91 -0.02 3.69 16 28 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 29 H 0.41 6.96 5.91 -92.71 -0.55 6.41 16 30 H 0.42 3.35 8.90 -92.70 -0.83 2.52 16 31 H 0.14 4.93 7.62 -2.91 -0.02 4.91 16 32 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -62.93 310.73 3.97 -58.96 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -0.22 Total: 16.17 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 2.82 Total: -33.99 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.37 Total: -59.93 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.29 Total: -26.06 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -62.93 3.97 -58.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853661973.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.974 kcal (2) G-P(sol) polarization free energy of solvation -62.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds