Wall clock time and date at job start Tue Mar 31 2020 01:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38507 * 120.82220 * 2 1 4 4 C 1.39290 * 119.18729 * 179.79821 * 3 2 1 5 5 C 1.48251 * 119.57091 * 180.20350 * 4 3 2 6 6 O 1.21402 * 120.00106 * 0.27205 * 5 4 3 7 7 O 1.34660 * 119.99834 * 180.27134 * 5 4 3 8 8 C 1.45196 * 117.00072 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47363 * 179.97438 * 8 7 5 10 10 C 1.50693 * 109.47296 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00242 * 0.02562 * 10 9 8 12 12 C 1.37883 * 120.00045 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99935 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00130 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46864 * 89.99973 * 14 12 10 16 16 H 1.48499 * 109.47135 * 210.00217 * 14 12 10 17 17 H 1.48497 * 109.46806 * 330.00207 * 14 12 10 18 18 N 1.32770 * 120.85126 * 0.47947 * 4 3 2 19 19 C 1.31365 * 121.80224 * 359.75041 * 18 4 3 20 20 C 1.39791 * 120.72133 * 0.02562 * 19 18 4 21 21 C 1.48016 * 120.45774 * 180.02562 * 20 19 18 22 22 N 1.34773 * 120.00140 * 353.97771 * 21 20 19 23 23 O 1.21527 * 119.99650 * 173.97239 * 21 20 19 24 24 H 1.09000 * 109.47710 * 263.12212 * 1 2 3 25 25 H 1.09006 * 109.46964 * 143.11534 * 1 2 3 26 26 H 1.09004 * 109.46900 * 23.11935 * 1 2 3 27 27 H 1.08002 * 120.40386 * 359.97438 * 3 2 1 28 28 H 1.08999 * 109.47280 * 300.00169 * 8 7 5 29 29 H 1.09007 * 109.47042 * 60.00399 * 8 7 5 30 30 H 1.08997 * 109.47475 * 300.01159 * 9 8 7 31 31 H 1.09007 * 109.46714 * 60.00201 * 9 8 7 32 32 H 0.97000 * 120.00012 * 179.97438 * 13 12 10 33 33 H 1.07995 * 119.64252 * 180.02562 * 19 18 4 34 34 H 0.96998 * 120.00044 * 359.97438 * 22 21 20 35 35 H 0.97003 * 119.99593 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2166 1.1894 0.0000 4 6 3.6089 1.1497 0.0043 5 6 4.3770 2.4177 0.0089 6 8 3.7923 3.4816 0.0139 7 8 5.7233 2.3894 0.0075 8 6 6.4096 3.6689 0.0117 9 6 7.9219 3.4366 0.0101 10 6 8.6341 4.7645 0.0137 11 1 8.0652 5.6825 0.0173 12 6 10.0123 4.8077 0.0125 13 7 10.7052 3.6899 0.0076 14 14 10.8953 6.4539 0.0178 15 1 11.1306 6.8848 1.4192 16 1 12.1970 6.3196 -0.6841 17 1 10.0600 7.4657 -0.6776 18 7 4.2570 -0.0091 -0.0012 19 6 3.6206 -1.1582 -0.0060 20 6 2.2233 -1.2007 -0.0059 21 6 1.5121 -2.4988 -0.0107 22 7 2.2062 -3.6470 -0.1376 23 8 0.3023 -2.5291 0.0998 24 1 -0.3634 -0.1231 1.0202 25 1 -0.3633 -0.8220 -0.6168 26 1 -0.3633 0.9452 -0.4035 27 1 1.6967 2.1361 -0.0004 28 1 6.1277 4.2353 -0.8759 29 1 6.1294 4.2286 0.9041 30 1 8.2035 2.8702 0.8977 31 1 8.2024 2.8767 -0.8822 32 1 11.6747 3.7203 0.0063 33 1 4.1829 -2.0802 -0.0099 34 1 3.1719 -3.6227 -0.2261 35 1 1.7401 -4.4977 -0.1404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853921520.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:22 Heat of formation + Delta-G solvation = -120.421956 kcal Electronic energy + Delta-G solvation = -20245.487200 eV Core-core repulsion = 16821.387965 eV Total energy + Delta-G solvation = -3424.099235 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.24012 -41.22949 -39.83766 -37.82188 -35.51600 -35.35972 -34.79152 -32.80787 -32.17794 -29.08067 -27.68147 -26.31229 -24.25839 -23.22435 -22.62892 -21.67137 -19.39227 -19.00093 -18.47671 -18.25874 -17.76229 -17.68577 -16.92386 -16.54009 -16.30488 -16.20662 -15.41721 -15.36259 -14.65654 -14.64052 -14.38675 -14.01250 -13.87371 -13.77404 -13.27861 -13.17224 -13.03628 -12.63009 -12.60042 -12.12945 -11.65604 -11.52092 -11.43502 -11.31576 -10.90363 -10.69571 -10.61876 -10.60144 -10.51703 -8.26418 -6.39992 -1.09101 -0.04239 0.95474 1.38305 1.43847 1.46001 1.56242 1.79587 2.34028 2.39838 2.58923 2.89163 3.07917 3.43370 3.47999 3.53195 3.80583 3.83279 4.19180 4.20276 4.37741 4.48551 4.51874 4.67417 4.75095 4.94171 5.15767 5.16258 5.34111 5.43058 5.45852 5.72116 5.84657 6.05491 6.29113 6.32978 6.65802 6.73817 7.19401 7.29728 8.86369 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.039393 B = 0.002945 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.621783 B = 9505.387225 C =10188.893069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.012 3.988 3 C -0.111 4.111 4 C 0.105 3.895 5 C 0.510 3.490 6 O -0.518 6.518 7 O -0.343 6.343 8 C 0.086 3.914 9 C 0.032 3.968 10 C -0.550 4.550 11 H 0.067 0.933 12 C 0.006 3.994 13 N -0.927 5.927 14 Si 0.975 3.025 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.262 1.262 18 N -0.470 5.470 19 C 0.145 3.855 20 C -0.172 4.172 21 C 0.572 3.428 22 N -0.824 5.824 23 O -0.558 6.558 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.167 0.833 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.006 0.994 31 H 0.006 0.994 32 H 0.268 0.732 33 H 0.208 0.792 34 H 0.417 0.583 35 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.119 -14.747 -0.537 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.004 3.996 3 C -0.131 4.131 4 C -0.029 4.029 5 C 0.354 3.646 6 O -0.407 6.407 7 O -0.258 6.258 8 C 0.014 3.986 9 C -0.005 4.005 10 C -0.588 4.588 11 H 0.085 0.915 12 C -0.193 4.193 13 N -0.566 5.566 14 Si 0.798 3.202 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.187 1.187 18 N -0.181 5.181 19 C -0.017 4.017 20 C -0.177 4.177 21 C 0.356 3.644 22 N -0.389 5.389 23 O -0.438 6.438 24 H 0.108 0.892 25 H 0.113 0.887 26 H 0.104 0.896 27 H 0.185 0.815 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.077 0.923 33 H 0.225 0.775 34 H 0.250 0.750 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -18.896 -14.264 -0.465 23.680 hybrid contribution 0.353 0.563 0.001 0.665 sum -18.543 -13.701 -0.464 23.060 Atomic orbital electron populations 1.21120 0.86867 1.04695 1.04611 1.20715 0.98810 0.90349 0.89747 1.22130 0.91875 1.01024 0.98097 1.20168 0.90986 0.90122 1.01607 1.21334 0.81797 0.88840 0.72643 1.90791 1.71284 1.31980 1.46687 1.86679 1.19300 1.37729 1.82084 1.23330 0.93034 0.80806 1.01474 1.18966 0.87624 0.97217 0.96695 1.21371 0.92240 0.92608 1.52562 0.91482 1.25985 0.98315 1.00991 0.94052 1.70103 1.07300 1.28861 1.50332 0.85302 0.77665 0.78529 0.78674 1.19530 1.20403 1.18651 1.67664 1.41265 0.98235 1.10954 1.23625 0.90364 0.96507 0.91254 1.21262 0.95393 0.94937 1.06127 1.17839 0.86319 0.84288 0.75929 1.43581 1.12734 1.07885 1.74744 1.90791 1.14681 1.87446 1.50858 0.89179 0.88740 0.89596 0.81531 0.91612 0.91631 0.97606 0.97580 0.92319 0.77547 0.75050 0.74754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 8.82 71.23 0.63 -1.19 16 2 C 0.01 0.24 5.95 -19.42 -0.12 0.12 16 3 C -0.11 -2.56 9.30 22.59 0.21 -2.35 16 4 C 0.11 3.13 6.75 41.92 0.28 3.41 16 5 C 0.51 19.06 7.95 70.49 0.56 19.62 16 6 O -0.52 -20.35 16.10 20.15 0.32 -20.03 16 7 O -0.34 -14.78 10.03 -55.69 -0.56 -15.34 16 8 C 0.09 3.98 5.41 71.98 0.39 4.37 16 9 C 0.03 1.76 5.35 29.85 0.16 1.92 16 10 C -0.55 -31.41 9.11 25.60 0.23 -31.18 16 11 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 12 C 0.01 0.32 5.46 84.66 0.46 0.78 16 13 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 14 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 16 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 18 N -0.47 -13.02 10.10 -183.94 -1.86 -14.88 16 19 C 0.14 2.57 10.69 85.14 0.91 3.48 16 20 C -0.17 -2.96 5.90 -19.93 -0.12 -3.08 16 21 C 0.57 8.52 8.00 86.84 0.69 9.21 16 22 N -0.82 -5.07 8.83 -175.50 -1.55 -6.62 16 23 O -0.56 -11.67 14.33 -3.80 -0.05 -11.72 16 24 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.09 1.64 5.97 -2.38 -0.01 1.63 16 26 H 0.09 1.05 8.06 -2.38 -0.02 1.03 16 27 H 0.17 3.47 7.63 -2.91 -0.02 3.44 16 28 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 30 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.21 1.68 6.46 -2.91 -0.02 1.66 16 34 H 0.42 0.40 6.93 -92.71 -0.64 -0.24 16 35 H 0.42 1.41 8.93 -92.71 -0.83 0.59 16 Total: -1.00 -75.12 312.95 2.60 -72.52 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -0.31 Total: 0.84 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 4.30 Total: 5.12 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -3.12 Total: -77.12 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -0.29 Total: -47.09 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -75.12 2.60 -72.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853921520.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.903 kcal (2) G-P(sol) polarization free energy of solvation -75.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds