Wall clock time and date at job start Tue Mar 31 2020 00:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34699 * 116.99896 * 2 1 4 4 O 1.21471 * 120.00499 * 0.02562 * 3 2 1 5 5 C 1.47748 * 119.99909 * 179.97438 * 3 2 1 6 6 C 1.39666 * 120.11325 * 6.17186 * 5 3 2 7 7 C 1.37973 * 120.00327 * 179.97438 * 6 5 3 8 8 C 1.38260 * 120.22841 * 0.04272 * 7 6 5 9 9 C 1.38986 * 120.22971 * 359.97438 * 8 7 6 10 10 N 1.39713 * 119.99570 * 179.97438 * 9 8 7 11 11 N 1.40100 * 120.00609 * 0.02841 * 10 9 8 12 12 C 1.34770 * 120.00175 * 179.97438 * 11 10 9 13 13 O 1.21683 * 120.00145 * 0.02562 * 12 11 10 14 14 C 1.46378 * 119.99795 * 179.97438 * 12 11 10 15 15 H 1.08000 * 119.99915 * 0.02562 * 14 12 11 16 16 C 1.40051 * 119.99814 * 179.97438 * 14 12 11 17 17 N 1.30671 * 120.00014 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 119.99693 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47397 * 90.00495 * 18 16 14 20 20 H 1.48511 * 109.46996 * 210.00159 * 18 16 14 21 21 H 1.48498 * 109.47659 * 329.99901 * 18 16 14 22 22 C 1.38663 * 119.99905 * 0.02562 * 9 8 7 23 23 C 1.50705 * 120.11521 * 179.72334 * 22 9 8 24 24 H 1.09004 * 109.46948 * 59.99842 * 1 2 3 25 25 H 1.09004 * 109.47570 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47294 * 300.00002 * 1 2 3 27 27 H 1.08004 * 119.99929 * 0.03859 * 6 5 3 28 28 H 1.07996 * 119.88194 * 180.02562 * 7 6 5 29 29 H 1.07994 * 119.88104 * 179.97438 * 8 7 6 30 30 H 0.97001 * 119.99722 * 180.02562 * 10 9 8 31 31 H 0.97001 * 119.99670 * 359.97438 * 11 10 9 32 32 H 0.97001 * 119.99573 * 179.97438 * 17 16 14 33 33 H 1.09002 * 109.47026 * 96.49863 * 23 22 9 34 34 H 1.08999 * 109.47349 * 216.50071 * 23 22 9 35 35 H 1.09002 * 109.47053 * 336.50294 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2775 0.0006 6 6 4.3017 0.1147 -0.1288 7 6 5.6794 0.1896 -0.1285 8 6 6.3099 1.4132 0.0004 9 6 5.5603 2.5764 0.1301 10 7 6.2026 3.8103 0.2606 11 7 7.6021 3.8752 0.2602 12 6 8.2215 5.0656 0.3856 13 8 7.5653 6.0839 0.4996 14 6 9.6837 5.1332 0.3857 15 1 10.2661 4.2293 0.2849 16 6 10.3274 6.3703 0.5155 17 7 9.6227 7.4639 0.6369 18 14 12.1934 6.4567 0.5149 19 1 12.6805 6.6295 -0.8773 20 1 12.6358 7.6089 1.3408 21 1 12.7474 5.2005 1.0808 22 6 4.1752 2.5121 0.1310 23 6 3.3599 3.7711 0.2777 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.8130 -0.8432 -0.2301 28 1 6.2672 -0.7108 -0.2290 29 1 7.3886 1.4653 0.0004 30 1 5.6795 4.6221 0.3515 31 1 8.1252 3.0634 0.1697 32 1 10.0686 8.3206 0.7272 33 1 3.0596 4.1264 -0.7080 34 1 2.4722 3.5616 0.8745 35 1 3.9584 4.5359 0.7728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855625344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:48 Heat of formation + Delta-G solvation = -56.127294 kcal Electronic energy + Delta-G solvation = -20748.627741 eV Core-core repulsion = 17327.316532 eV Total energy + Delta-G solvation = -3421.311209 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.67691 -39.21766 -37.47653 -36.49714 -34.84317 -32.73384 -32.53796 -31.15918 -28.83873 -27.63138 -26.71255 -25.94889 -23.61542 -21.30152 -21.17882 -19.98982 -18.50570 -17.26814 -17.04190 -16.51940 -16.39140 -15.75522 -15.36172 -15.08143 -14.30353 -14.13577 -14.05597 -13.53587 -13.36162 -13.14467 -12.80445 -12.67533 -12.29138 -12.14066 -12.00642 -11.67810 -11.37890 -11.21436 -11.02146 -10.88177 -10.73842 -10.70031 -10.40277 -10.03329 -9.05385 -8.77736 -8.46574 -7.99085 -6.49965 -6.41343 -4.86567 0.84607 1.69423 2.56724 2.65837 2.99942 3.04818 3.13484 3.19257 3.95470 4.01926 4.38423 4.70486 4.92802 4.93702 5.01627 5.12904 5.18008 5.22316 5.33113 5.56945 5.63118 5.82961 5.88510 5.93545 6.04000 6.18072 6.38431 6.44012 6.59615 6.67354 6.96267 7.23859 7.26830 7.74556 7.88434 8.12425 8.56807 8.79937 9.16044 10.34671 10.52167 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043169 B = 0.003392 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.461194 B = 8252.430551 C = 8878.509735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.509 3.491 4 O -0.501 6.501 5 C -0.080 4.080 6 C -0.141 4.141 7 C -0.080 4.080 8 C -0.175 4.175 9 C 0.223 3.777 10 N -0.527 5.527 11 N -0.565 5.565 12 C 0.554 3.446 13 O -0.578 6.578 14 C -0.534 4.534 15 H 0.074 0.926 16 C 0.087 3.913 17 N -0.762 5.762 18 Si 0.918 3.082 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.104 4.104 23 C -0.114 4.114 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.429 0.571 31 H 0.403 0.597 32 H 0.272 0.728 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.496 -15.157 -1.301 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.355 3.645 4 O -0.390 6.390 5 C -0.082 4.082 6 C -0.162 4.162 7 C -0.099 4.099 8 C -0.200 4.200 9 C 0.112 3.888 10 N -0.245 5.245 11 N -0.316 5.316 12 C 0.359 3.641 13 O -0.459 6.459 14 C -0.572 4.572 15 H 0.093 0.907 16 C -0.134 4.134 17 N -0.390 5.390 18 Si 0.741 3.259 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.111 4.111 23 C -0.171 4.171 24 H 0.081 0.919 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.147 0.853 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.274 0.726 31 H 0.242 0.758 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.969 -13.765 -1.175 17.640 hybrid contribution 0.779 -0.027 -0.037 0.780 sum -10.190 -13.791 -1.212 17.190 Atomic orbital electron populations 1.23243 0.76407 1.03514 1.02548 1.86559 1.23170 1.32970 1.84521 1.21345 0.89311 0.81153 0.72684 1.90789 1.67102 1.35495 1.45656 1.18464 0.88057 0.94000 1.07721 1.20964 0.93726 0.97079 1.04455 1.20743 0.94012 0.96914 0.98231 1.20697 0.99790 0.91345 1.08157 1.17442 0.90278 0.85799 0.95294 1.43650 0.97180 1.06169 1.77524 1.45866 0.91298 1.11603 1.82857 1.18610 0.88657 0.79708 0.77092 1.90624 1.66586 1.33352 1.55330 1.20659 0.88049 0.94382 1.54085 0.90743 1.25722 1.00312 0.94906 0.92491 1.70007 1.36805 0.98645 1.33554 0.86206 0.82022 0.78747 0.78875 1.19534 1.20279 1.18690 1.19183 0.91269 0.94861 1.05745 1.20906 0.99737 0.93454 1.02973 0.91931 0.88184 0.91924 0.85329 0.85551 0.85746 0.72635 0.75834 0.91674 0.90939 0.89167 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.16 9.83 -40.49 -0.40 -4.55 16 3 C 0.51 7.17 7.83 34.62 0.27 7.44 16 4 O -0.50 -7.87 13.13 -19.24 -0.25 -8.12 16 5 C -0.08 -1.17 5.87 -105.01 -0.62 -1.79 16 6 C -0.14 -1.77 9.61 -39.15 -0.38 -2.14 16 7 C -0.08 -0.99 10.02 -39.67 -0.40 -1.38 16 8 C -0.18 -2.57 9.48 -39.30 -0.37 -2.95 16 9 C 0.22 3.77 6.69 -83.83 -0.56 3.21 16 10 N -0.53 -10.52 6.35 32.39 0.21 -10.32 16 11 N -0.56 -12.38 6.21 30.19 0.19 -12.19 16 12 C 0.55 15.10 7.86 -12.99 -0.10 15.00 16 13 O -0.58 -17.95 14.86 5.20 0.08 -17.87 16 14 C -0.53 -14.22 9.54 -35.63 -0.34 -14.56 16 15 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 16 C 0.09 2.30 5.50 -17.37 -0.10 2.21 16 17 N -0.76 -21.91 11.83 55.55 0.66 -21.25 16 18 Si 0.92 19.12 29.56 -169.99 -5.02 14.10 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 22 C -0.10 -1.66 5.93 -103.99 -0.62 -2.28 16 23 C -0.11 -1.79 8.43 36.01 0.30 -1.48 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.13 1.34 7.62 -52.48 -0.40 0.94 16 28 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.12 1.71 6.19 -52.49 -0.32 1.38 16 30 H 0.43 8.99 5.86 -182.60 -1.07 7.92 16 31 H 0.40 7.58 6.57 -182.60 -1.20 6.38 16 32 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.09 1.41 5.85 -51.93 -0.30 1.10 16 35 H 0.06 0.90 6.24 -51.93 -0.32 0.58 16 LS Contribution 305.51 15.07 4.60 4.60 Total: -1.00 -33.06 305.51 -7.06 -40.13 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -5.28 Total: 12.84 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -1.84 Total: 2.65 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 1.05 Total: -43.76 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.57 Total: -30.55 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.06 -7.06 -40.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855625344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.002 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds