Wall clock time and date at job start Tue Mar 31 2020 00:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34699 * 116.99896 * 2 1 4 4 O 1.21471 * 120.00499 * 0.02562 * 3 2 1 5 5 C 1.47748 * 119.99909 * 179.97438 * 3 2 1 6 6 C 1.39666 * 120.11325 * 6.17186 * 5 3 2 7 7 C 1.37973 * 120.00327 * 179.97438 * 6 5 3 8 8 C 1.38260 * 120.22841 * 0.04272 * 7 6 5 9 9 C 1.38986 * 120.22971 * 359.97438 * 8 7 6 10 10 N 1.39713 * 119.99570 * 179.97438 * 9 8 7 11 11 N 1.40100 * 120.00609 * 0.02841 * 10 9 8 12 12 C 1.34770 * 120.00175 * 179.97438 * 11 10 9 13 13 O 1.21683 * 120.00145 * 0.02562 * 12 11 10 14 14 C 1.46378 * 119.99795 * 179.97438 * 12 11 10 15 15 H 1.08000 * 119.99915 * 0.02562 * 14 12 11 16 16 C 1.40051 * 119.99814 * 179.97438 * 14 12 11 17 17 N 1.30671 * 120.00014 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 119.99693 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47397 * 90.00495 * 18 16 14 20 20 H 1.48511 * 109.46996 * 210.00159 * 18 16 14 21 21 H 1.48498 * 109.47659 * 329.99901 * 18 16 14 22 22 C 1.38663 * 119.99905 * 0.02562 * 9 8 7 23 23 C 1.50705 * 120.11521 * 179.72334 * 22 9 8 24 24 H 1.09004 * 109.46948 * 59.99842 * 1 2 3 25 25 H 1.09004 * 109.47570 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47294 * 300.00002 * 1 2 3 27 27 H 1.08004 * 119.99929 * 0.03859 * 6 5 3 28 28 H 1.07996 * 119.88194 * 180.02562 * 7 6 5 29 29 H 1.07994 * 119.88104 * 179.97438 * 8 7 6 30 30 H 0.97001 * 119.99722 * 180.02562 * 10 9 8 31 31 H 0.97001 * 119.99670 * 359.97438 * 11 10 9 32 32 H 0.97001 * 119.99573 * 179.97438 * 17 16 14 33 33 H 1.09002 * 109.47026 * 96.49863 * 23 22 9 34 34 H 1.08999 * 109.47349 * 216.50071 * 23 22 9 35 35 H 1.09002 * 109.47053 * 336.50294 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2775 0.0006 6 6 4.3017 0.1147 -0.1288 7 6 5.6794 0.1896 -0.1285 8 6 6.3099 1.4132 0.0004 9 6 5.5603 2.5764 0.1301 10 7 6.2026 3.8103 0.2606 11 7 7.6021 3.8752 0.2602 12 6 8.2215 5.0656 0.3856 13 8 7.5653 6.0839 0.4996 14 6 9.6837 5.1332 0.3857 15 1 10.2661 4.2293 0.2849 16 6 10.3274 6.3703 0.5155 17 7 9.6227 7.4639 0.6369 18 14 12.1934 6.4567 0.5149 19 1 12.6805 6.6295 -0.8773 20 1 12.6358 7.6089 1.3408 21 1 12.7474 5.2005 1.0808 22 6 4.1752 2.5121 0.1310 23 6 3.3599 3.7711 0.2777 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.8130 -0.8432 -0.2301 28 1 6.2672 -0.7108 -0.2290 29 1 7.3886 1.4653 0.0004 30 1 5.6795 4.6221 0.3515 31 1 8.1252 3.0634 0.1697 32 1 10.0686 8.3206 0.7272 33 1 3.0596 4.1264 -0.7080 34 1 2.4722 3.5616 0.8745 35 1 3.9584 4.5359 0.7728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855625344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:47 Heat of formation + Delta-G solvation = -78.490331 kcal Electronic energy + Delta-G solvation = -20749.597475 eV Core-core repulsion = 17327.316532 eV Total energy + Delta-G solvation = -3422.280943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.76561 -40.48882 -39.24848 -37.54236 -36.45195 -34.67703 -33.87749 -32.61529 -30.24177 -28.69329 -27.98633 -27.59473 -24.78541 -22.71727 -22.51005 -21.42967 -19.97157 -18.72011 -18.37037 -17.90430 -17.45040 -17.38480 -16.62319 -16.47394 -15.69019 -15.49835 -15.46251 -14.84932 -14.67899 -14.56367 -14.19794 -14.08191 -13.40899 -13.38662 -13.26765 -12.96364 -12.81314 -12.79054 -12.66281 -12.23567 -12.15337 -12.02939 -11.76717 -11.17264 -10.97707 -10.11601 -10.08752 -9.85684 -8.38775 -8.05805 -6.91923 -0.29446 0.54850 1.30693 1.43097 1.46306 1.54060 1.60782 1.78078 2.27861 2.38792 2.82768 3.53193 3.68260 3.69061 3.86894 4.03478 4.07205 4.34151 4.37134 4.48508 4.64673 4.68921 4.72934 4.73747 4.81681 5.07864 5.24252 5.27083 5.31860 5.41723 5.49630 5.55320 5.85511 6.00878 6.43802 6.70368 6.76466 6.89826 7.34896 8.37289 8.57391 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043169 B = 0.003392 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.461194 B = 8252.430551 C = 8878.509735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.510 3.490 4 O -0.525 6.525 5 C -0.094 4.094 6 C -0.119 4.119 7 C -0.071 4.071 8 C -0.175 4.175 9 C 0.196 3.804 10 N -0.547 5.547 11 N -0.552 5.552 12 C 0.538 3.462 13 O -0.629 6.629 14 C -0.558 4.558 15 H 0.100 0.900 16 C 0.029 3.971 17 N -0.819 5.819 18 Si 1.006 2.994 19 H -0.261 1.261 20 H -0.275 1.275 21 H -0.244 1.244 22 C -0.117 4.117 23 C -0.108 4.108 24 H 0.062 0.938 25 H 0.137 0.863 26 H 0.061 0.939 27 H 0.160 0.840 28 H 0.169 0.831 29 H 0.133 0.867 30 H 0.419 0.581 31 H 0.417 0.583 32 H 0.277 0.723 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.598 -18.689 -1.635 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.357 3.643 4 O -0.417 6.417 5 C -0.096 4.096 6 C -0.139 4.139 7 C -0.089 4.089 8 C -0.199 4.199 9 C 0.090 3.910 10 N -0.268 5.268 11 N -0.303 5.303 12 C 0.344 3.656 13 O -0.515 6.515 14 C -0.595 4.595 15 H 0.118 0.882 16 C -0.187 4.187 17 N -0.448 5.448 18 Si 0.825 3.175 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.167 1.167 22 C -0.124 4.124 23 C -0.164 4.164 24 H 0.080 0.920 25 H 0.155 0.845 26 H 0.080 0.920 27 H 0.178 0.822 28 H 0.186 0.814 29 H 0.151 0.849 30 H 0.261 0.739 31 H 0.259 0.741 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.108 -17.443 -1.523 20.218 hybrid contribution 0.283 0.825 0.043 0.873 sum -9.825 -16.618 -1.480 19.362 Atomic orbital electron populations 1.23595 0.74324 1.05946 1.02539 1.86532 1.25122 1.31309 1.83864 1.21300 0.89189 0.81581 0.72215 1.90781 1.67555 1.36486 1.46839 1.18665 0.88825 0.94084 1.07985 1.21406 0.93901 0.97479 1.01144 1.21195 0.94197 0.97270 0.96222 1.21015 1.00344 0.91495 1.07030 1.17707 0.90775 0.85377 0.97110 1.43618 0.95721 1.07030 1.80451 1.45223 0.92812 1.10754 1.81481 1.18951 0.89443 0.80291 0.76944 1.90576 1.67734 1.35541 1.57651 1.21245 0.88350 0.95833 1.54108 0.88233 1.27034 1.06552 0.94046 0.91068 1.70179 1.39784 0.99690 1.35103 0.84887 0.73975 0.79393 0.79269 1.18562 1.19998 1.16725 1.19259 0.91078 0.95551 1.06492 1.20806 0.99468 0.93563 1.02568 0.91967 0.84515 0.92026 0.82222 0.81366 0.84920 0.73895 0.74114 0.91266 0.91358 0.89267 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.35 -7.31 9.83 -56.08 -0.55 -7.86 16 3 C 0.51 13.70 7.83 70.34 0.55 14.25 16 4 O -0.53 -16.43 13.13 19.93 0.26 -16.17 16 5 C -0.09 -2.58 5.87 -20.11 -0.12 -2.69 16 6 C -0.12 -2.54 9.61 22.55 0.22 -2.32 16 7 C -0.07 -1.45 10.02 22.21 0.22 -1.22 16 8 C -0.17 -4.79 9.48 22.45 0.21 -4.58 16 9 C 0.20 6.68 6.69 38.17 0.26 6.94 16 10 N -0.55 -22.77 6.35 -51.45 -0.33 -23.10 16 11 N -0.55 -24.82 6.21 -176.63 -1.10 -25.92 16 12 C 0.54 30.41 7.86 86.36 0.68 31.09 16 13 O -0.63 -41.26 14.86 -4.29 -0.06 -41.33 16 14 C -0.56 -30.01 9.54 24.83 0.24 -29.78 16 15 H 0.10 4.65 7.85 -2.91 -0.02 4.62 16 16 C 0.03 1.55 5.50 85.31 0.47 2.02 16 17 N -0.82 -48.67 11.83 21.84 0.26 -48.41 16 18 Si 1.01 38.89 29.56 68.60 2.03 40.92 16 19 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 20 H -0.28 -10.39 7.11 99.48 0.71 -9.69 16 21 H -0.24 -8.62 7.11 99.48 0.71 -7.91 16 22 C -0.12 -3.78 5.93 -19.46 -0.12 -3.90 16 23 C -0.11 -3.55 8.43 71.24 0.60 -2.95 16 24 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.16 2.48 7.62 -2.91 -0.02 2.46 16 28 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.13 3.36 6.19 -2.91 -0.02 3.34 16 30 H 0.42 18.88 5.86 -213.32 -1.25 17.63 16 31 H 0.42 15.67 6.57 -213.32 -1.40 14.27 16 32 H 0.28 14.91 8.29 -92.71 -0.77 14.15 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.09 2.92 5.85 -2.39 -0.01 2.90 16 35 H 0.04 1.57 6.24 -2.39 -0.01 1.55 16 Total: -1.00 -75.47 305.51 3.42 -72.05 By element: Atomic # 1 Polarization: 42.85 SS G_CDS: -1.49 Total: 41.35 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 4.41 Total: 8.46 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -1.17 Total: -97.42 kcal Atomic # 8 Polarization: -65.00 SS G_CDS: -0.35 Total: -65.35 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -75.47 3.42 -72.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855625344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.442 kcal (2) G-P(sol) polarization free energy of solvation -75.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds