Wall clock time and date at job start Tue Mar 31 2020 00:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 120.00104 * 2 1 4 4 H 1.48505 * 109.46934 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47155 * 299.99570 * 3 2 1 6 6 H 1.48503 * 109.47222 * 60.00007 * 3 2 1 7 7 C 1.38956 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00225 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99436 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99572 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00213 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99908 * 180.02562 * 10 9 7 13 13 N 1.46506 * 109.47383 * 180.02562 * 12 10 9 14 14 C 1.34775 * 119.99969 * 180.02562 * 13 12 10 15 15 O 1.21276 * 120.00478 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99665 * 179.97438 * 14 13 12 17 17 H 1.08995 * 115.54949 * 34.32857 * 16 14 13 18 18 C 1.53067 * 117.51005 * 248.60806 * 16 14 13 19 19 C 1.52997 * 117.49865 * 179.97438 * 16 14 13 20 20 H 1.09009 * 117.49795 * 0.02562 * 19 16 14 21 21 C 1.50693 * 117.50134 * 215.00262 * 19 16 14 22 22 C 1.34512 * 125.79339 * 120.08498 * 21 19 16 23 23 C 1.41376 * 106.84688 * 179.79418 * 22 21 19 24 24 C 1.34517 * 106.83881 * 0.37683 * 23 22 21 25 25 O 1.34305 * 125.78769 * 300.11657 * 21 19 16 26 26 H 0.96994 * 119.99456 * 0.02562 * 1 2 3 27 27 H 0.96992 * 120.00347 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.47441 * 59.99838 * 12 10 9 29 29 H 1.09007 * 109.47434 * 299.99896 * 12 10 9 30 30 H 0.97004 * 119.99494 * 0.02562 * 13 12 10 31 31 H 1.09009 * 117.51594 * 145.04640 * 18 16 14 32 32 H 1.09001 * 117.50073 * 0.02562 * 18 16 14 33 33 H 1.08006 * 126.57585 * 0.04182 * 22 21 19 34 34 H 1.07998 * 126.58562 * 180.23597 * 23 22 21 35 35 H 1.08002 * 125.79423 * 179.89440 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1957 -5.9765 0.0027 14 6 1.7464 -7.2472 0.0027 15 8 0.5540 -7.4688 0.0028 16 6 2.7257 -8.3927 0.0027 17 1 3.6485 -8.2223 0.5571 18 6 2.8087 -9.2519 -1.2614 19 6 2.1532 -9.8115 0.0033 20 1 1.0682 -9.9165 0.0034 21 6 2.9085 -10.8663 0.7700 22 6 2.4276 -11.5866 1.7992 23 6 3.4645 -12.4545 2.2118 24 6 4.5200 -12.2068 1.4156 25 8 4.1764 -11.2461 0.5421 26 1 -0.4849 0.8400 -0.0004 27 1 0.3534 -2.3907 0.0024 28 1 0.6167 -4.9209 -0.8875 29 1 0.6174 -4.9205 0.8925 30 1 3.1494 -5.7992 0.0030 31 1 3.7861 -9.6468 -1.5386 32 1 2.1552 -8.9882 -2.0930 33 1 1.4376 -11.5181 2.2256 34 1 3.4188 -13.1762 3.0140 35 1 5.4794 -12.7001 1.4668 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863915624.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:48 Heat of formation + Delta-G solvation = -35.016327 kcal Electronic energy + Delta-G solvation = -20048.331677 eV Core-core repulsion = 16627.935908 eV Total energy + Delta-G solvation = -3420.395769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.78990 -39.91649 -38.31542 -36.59581 -34.47234 -33.69499 -33.19426 -31.40751 -29.79953 -28.04751 -25.02253 -23.59771 -23.29986 -21.88216 -20.39170 -19.99295 -19.51799 -18.14390 -17.87425 -17.23034 -16.18226 -15.75329 -15.63120 -15.27236 -14.92456 -14.68269 -14.21151 -13.92127 -13.64083 -13.28956 -13.01427 -12.83062 -12.67315 -12.22132 -12.12537 -11.98087 -11.65623 -11.19779 -11.15559 -10.73396 -10.42372 -10.34405 -10.10187 -9.82070 -9.66870 -8.85561 -8.66655 -8.55608 -8.12441 -6.53599 -3.95638 1.43234 2.33655 2.60975 2.71171 3.08920 3.20528 3.24827 3.31357 3.69028 3.73454 4.09103 4.29198 4.47826 4.63300 4.78663 4.84547 4.85622 5.05965 5.09016 5.14990 5.42842 5.58076 5.68075 5.73403 5.84122 5.87882 5.89647 5.92374 6.04219 6.27778 6.62241 6.92787 7.44439 7.75105 7.89990 8.36783 8.43397 9.02594 9.36885 9.84579 10.63354 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.045444 B = 0.002636 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.997966 B =10619.363520 C =10847.670852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.597 6.597 12 C 0.108 3.892 13 N -0.700 5.700 14 C 0.542 3.458 15 O -0.549 6.549 16 C -0.171 4.171 17 H 0.128 0.872 18 C -0.137 4.137 19 C -0.050 4.050 20 H 0.149 0.851 21 C 0.020 3.980 22 C -0.202 4.202 23 C -0.213 4.213 24 C -0.044 4.044 25 O -0.175 6.175 26 H 0.274 0.726 27 H 0.396 0.604 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.413 0.587 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.678 -20.742 0.958 21.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.213 3.787 11 O -0.484 6.484 12 C -0.019 4.019 13 N -0.353 5.353 14 C 0.328 3.672 15 O -0.427 6.427 16 C -0.192 4.192 17 H 0.146 0.854 18 C -0.174 4.174 19 C -0.069 4.069 20 H 0.166 0.834 21 C -0.030 4.030 22 C -0.221 4.221 23 C -0.232 4.232 24 C -0.111 4.111 25 O -0.072 6.072 26 H 0.084 0.916 27 H 0.230 0.770 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.251 0.749 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 4.674 -20.546 0.735 21.084 hybrid contribution 0.171 0.850 0.361 0.939 sum 4.845 -19.696 1.096 20.313 Atomic orbital electron populations 1.69622 1.06026 1.28457 1.49346 1.25338 0.95676 0.99971 0.96772 0.85753 0.79688 0.80777 0.77845 1.19116 1.20588 1.20595 1.19784 0.93494 0.81964 1.48163 0.87603 1.41806 1.09498 1.04491 1.62575 1.19728 0.88295 0.84983 0.85668 1.90501 1.13695 1.86806 1.57351 1.20984 0.91863 0.85743 1.03338 1.45614 1.11774 1.04388 1.73549 1.19414 0.88414 0.83140 0.76273 1.90685 1.16461 1.84847 1.50752 1.22364 1.01493 0.90315 1.05058 0.85382 1.23112 1.03340 0.99996 0.90949 1.20509 0.98807 0.88320 0.99236 0.83368 1.21380 0.82963 0.99733 0.98925 1.21571 1.01621 0.99717 0.99200 1.21845 0.93859 1.03849 1.03652 1.24023 1.00910 0.93587 0.92610 1.83980 1.28110 1.45501 1.49565 0.91613 0.77022 0.89729 0.89737 0.74910 0.87076 0.87092 0.83264 0.83416 0.78075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.79 13.05 55.50 0.72 -23.07 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.45 29.55 -169.99 -5.02 15.42 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.54 5.29 -10.96 -0.06 -13.60 16 10 C 0.43 9.74 7.85 -10.99 -0.09 9.65 16 11 O -0.60 -15.20 15.24 5.55 0.08 -15.12 16 12 C 0.11 1.97 6.15 -5.19 -0.03 1.94 16 13 N -0.70 -11.52 5.53 -61.47 -0.34 -11.86 16 14 C 0.54 8.35 7.61 -10.98 -0.08 8.26 16 15 O -0.55 -9.91 16.26 5.56 0.09 -9.82 16 16 C -0.17 -2.04 5.89 -91.74 -0.54 -2.58 16 17 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 18 C -0.14 -1.37 9.88 -26.67 -0.26 -1.63 16 19 C -0.05 -0.56 5.75 -91.75 -0.53 -1.08 16 20 H 0.15 1.67 7.67 -51.92 -0.40 1.27 16 21 C 0.02 0.22 6.80 -35.63 -0.24 -0.02 16 22 C -0.20 -2.11 10.81 -39.71 -0.43 -2.54 16 23 C -0.21 -1.91 10.91 -39.70 -0.43 -2.34 16 24 C -0.04 -0.37 12.09 29.42 0.36 -0.01 16 25 O -0.18 -1.88 10.36 5.68 0.06 -1.82 16 26 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.41 6.69 7.44 -40.82 -0.30 6.39 16 31 H 0.11 0.98 7.97 -51.92 -0.41 0.57 16 32 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.15 1.38 8.06 -52.48 -0.42 0.95 16 34 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.20 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 318.70 15.07 4.80 4.80 Total: -1.00 -31.74 318.70 -6.09 -37.83 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -3.91 Total: 15.41 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -2.52 Total: 1.82 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.33 Total: -48.53 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: 0.23 Total: -26.76 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.74 -6.09 -37.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863915624.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.818 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds