Wall clock time and date at job start Tue Mar 31 2020 00:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 120.00104 * 2 1 4 4 H 1.48505 * 109.46934 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47155 * 299.99570 * 3 2 1 6 6 H 1.48503 * 109.47222 * 60.00007 * 3 2 1 7 7 C 1.38956 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00225 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99436 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99572 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00213 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99908 * 180.02562 * 10 9 7 13 13 N 1.46506 * 109.47383 * 180.02562 * 12 10 9 14 14 C 1.34775 * 119.99969 * 180.02562 * 13 12 10 15 15 O 1.21276 * 120.00478 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99665 * 179.97438 * 14 13 12 17 17 H 1.08995 * 115.54949 * 34.32857 * 16 14 13 18 18 C 1.53067 * 117.51005 * 248.60806 * 16 14 13 19 19 C 1.52997 * 117.49865 * 179.97438 * 16 14 13 20 20 H 1.09009 * 117.49795 * 0.02562 * 19 16 14 21 21 C 1.50693 * 117.50134 * 215.00262 * 19 16 14 22 22 C 1.34512 * 125.79339 * 120.08498 * 21 19 16 23 23 C 1.41376 * 106.84688 * 179.79418 * 22 21 19 24 24 C 1.34517 * 106.83881 * 0.37683 * 23 22 21 25 25 O 1.34305 * 125.78769 * 300.11657 * 21 19 16 26 26 H 0.96994 * 119.99456 * 0.02562 * 1 2 3 27 27 H 0.96992 * 120.00347 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.47441 * 59.99838 * 12 10 9 29 29 H 1.09007 * 109.47434 * 299.99896 * 12 10 9 30 30 H 0.97004 * 119.99494 * 0.02562 * 13 12 10 31 31 H 1.09009 * 117.51594 * 145.04640 * 18 16 14 32 32 H 1.09001 * 117.50073 * 0.02562 * 18 16 14 33 33 H 1.08006 * 126.57585 * 0.04182 * 22 21 19 34 34 H 1.07998 * 126.58562 * 180.23597 * 23 22 21 35 35 H 1.08002 * 125.79423 * 179.89440 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1957 -5.9765 0.0027 14 6 1.7464 -7.2472 0.0027 15 8 0.5540 -7.4688 0.0028 16 6 2.7257 -8.3927 0.0027 17 1 3.6485 -8.2223 0.5571 18 6 2.8087 -9.2519 -1.2614 19 6 2.1532 -9.8115 0.0033 20 1 1.0682 -9.9165 0.0034 21 6 2.9085 -10.8663 0.7700 22 6 2.4276 -11.5866 1.7992 23 6 3.4645 -12.4545 2.2118 24 6 4.5200 -12.2068 1.4156 25 8 4.1764 -11.2461 0.5421 26 1 -0.4849 0.8400 -0.0004 27 1 0.3534 -2.3907 0.0024 28 1 0.6167 -4.9209 -0.8875 29 1 0.6174 -4.9205 0.8925 30 1 3.1494 -5.7992 0.0030 31 1 3.7861 -9.6468 -1.5386 32 1 2.1552 -8.9882 -2.0930 33 1 1.4376 -11.5181 2.2256 34 1 3.4188 -13.1762 3.0140 35 1 5.4794 -12.7001 1.4668 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863915624.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:48 Heat of formation + Delta-G solvation = -57.037714 kcal Electronic energy + Delta-G solvation = -20049.286596 eV Core-core repulsion = 16627.935908 eV Total energy + Delta-G solvation = -3421.350688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.51234 -41.20536 -40.06916 -37.63323 -36.25035 -35.30798 -33.91373 -33.39005 -30.61208 -29.52437 -26.77584 -24.81032 -24.13009 -22.60865 -21.42564 -21.34852 -20.90531 -20.06368 -18.89976 -18.26127 -17.41247 -17.02615 -16.83370 -16.74877 -16.44385 -15.91727 -15.82493 -15.36506 -15.18140 -14.16882 -14.07527 -13.74405 -13.72231 -13.59980 -13.56215 -13.39283 -12.92570 -12.90074 -12.45824 -12.11857 -12.05105 -11.64085 -11.59070 -11.07616 -10.81994 -10.58097 -10.24346 -10.09757 -9.29789 -8.52324 -6.02547 0.68052 1.34161 1.39553 1.42625 1.56513 1.67771 1.89230 1.90568 2.10502 2.31166 2.81069 3.09878 3.14883 3.44999 3.57039 3.72024 3.99707 4.11994 4.18036 4.21734 4.36551 4.41265 4.41992 4.64320 4.83882 4.89642 5.02918 5.06117 5.20201 5.23982 5.37769 5.60310 5.90654 6.20642 6.42770 6.49616 7.02350 7.09642 7.42807 7.92940 8.64830 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.045444 B = 0.002636 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.997966 B =10619.363520 C =10847.670852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.120 3.880 13 N -0.702 5.702 14 C 0.545 3.455 15 O -0.577 6.577 16 C -0.179 4.179 17 H 0.139 0.861 18 C -0.120 4.120 19 C -0.047 4.047 20 H 0.142 0.858 21 C -0.001 4.001 22 C -0.214 4.214 23 C -0.227 4.227 24 C -0.038 4.038 25 O -0.187 6.187 26 H 0.280 0.720 27 H 0.399 0.601 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.415 0.585 31 H 0.127 0.873 32 H 0.114 0.886 33 H 0.154 0.846 34 H 0.169 0.831 35 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 -21.652 0.989 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.512 6.512 12 C -0.007 4.007 13 N -0.355 5.355 14 C 0.333 3.667 15 O -0.457 6.457 16 C -0.200 4.200 17 H 0.156 0.844 18 C -0.157 4.157 19 C -0.065 4.065 20 H 0.160 0.840 21 C -0.051 4.051 22 C -0.233 4.233 23 C -0.246 4.246 24 C -0.105 4.105 25 O -0.083 6.083 26 H 0.090 0.910 27 H 0.233 0.767 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.253 0.747 31 H 0.146 0.854 32 H 0.133 0.867 33 H 0.171 0.829 34 H 0.186 0.814 35 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 5.498 -21.477 0.766 22.183 hybrid contribution -0.079 1.017 0.381 1.089 sum 5.420 -20.460 1.147 21.197 Atomic orbital electron populations 1.69684 1.07009 1.29602 1.49326 1.26139 0.96547 1.02709 0.95776 0.84809 0.78128 0.76700 0.78328 1.19432 1.19584 1.19639 1.19771 0.92949 0.83527 1.50320 0.89592 1.41857 1.09615 1.04631 1.63400 1.20419 0.88120 0.85930 0.83572 1.90478 1.15189 1.87536 1.58019 1.20809 0.91694 0.83850 1.04378 1.45645 1.11502 1.04406 1.73982 1.19923 0.88605 0.83256 0.74942 1.90670 1.17897 1.85169 1.51978 1.22287 1.01083 0.89429 1.07174 0.84353 1.23222 1.04078 0.98109 0.90273 1.20436 0.98631 0.87613 0.99853 0.84036 1.21366 0.83529 1.00519 0.99698 1.21871 1.02357 0.99981 0.99119 1.22174 0.93574 1.04275 1.04598 1.24831 1.02100 0.92312 0.91234 1.83969 1.27848 1.46214 1.50309 0.91047 0.76672 0.88521 0.88741 0.74696 0.85449 0.86727 0.82873 0.81367 0.74410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.52 13.05 21.67 0.28 -48.24 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 1.00 41.62 29.55 68.60 2.03 43.64 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.34 -18.48 9.68 84.04 0.81 -17.67 16 8 H 0.09 4.98 7.16 -2.92 -0.02 4.96 16 9 N -0.56 -27.99 5.29 -306.99 -1.62 -29.62 16 10 C 0.43 19.84 7.85 87.66 0.69 20.53 16 11 O -0.62 -32.14 15.24 -3.07 -0.05 -32.19 16 12 C 0.12 4.34 6.15 85.63 0.53 4.87 16 13 N -0.70 -22.73 5.53 -466.78 -2.58 -25.32 16 14 C 0.54 16.44 7.61 87.66 0.67 17.11 16 15 O -0.58 -20.59 16.26 -3.02 -0.05 -20.64 16 16 C -0.18 -4.08 5.89 -11.52 -0.07 -4.15 16 17 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 18 C -0.12 -2.21 9.88 30.63 0.30 -1.91 16 19 C -0.05 -1.00 5.75 -11.53 -0.07 -1.06 16 20 H 0.14 3.16 7.67 -2.38 -0.02 3.14 16 21 C 0.00 -0.03 6.80 24.83 0.17 0.14 16 22 C -0.21 -4.27 10.81 22.19 0.24 -4.03 16 23 C -0.23 -3.63 10.91 22.19 0.24 -3.38 16 24 C -0.04 -0.55 12.09 66.97 0.81 0.26 16 25 O -0.19 -3.67 10.36 -2.58 -0.03 -3.69 16 26 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 27 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 28 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 29 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 30 H 0.41 13.29 7.44 -92.71 -0.69 12.60 16 31 H 0.13 1.96 7.97 -2.38 -0.02 1.94 16 32 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 35 H 0.24 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -67.53 318.70 2.50 -65.03 By element: Atomic # 1 Polarization: 40.71 SS G_CDS: -0.28 Total: 40.43 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 4.79 Total: 10.59 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -3.92 Total: -103.17 kcal Atomic # 8 Polarization: -56.40 SS G_CDS: -0.12 Total: -56.53 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Total: -67.53 2.50 -65.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863915624.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.996 kcal (2) G-P(sol) polarization free energy of solvation -67.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds