Wall clock time and date at job start Tue Mar 31 2020 00:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 115.55164 * 2 1 4 4 C 1.53005 * 117.49861 * 214.29145 * 2 1 3 5 5 C 1.53006 * 60.00051 * 252.51194 * 4 2 1 6 6 C 1.50700 * 117.50206 * 107.48551 * 5 4 2 7 7 O 1.21202 * 120.00062 * 291.38751 * 6 5 4 8 8 O 1.34315 * 119.99706 * 111.37535 * 6 5 4 9 9 C 1.34914 * 116.99726 * 180.02562 * 8 6 5 10 10 H 1.07996 * 120.00752 * 0.02562 * 9 8 6 11 11 C 1.38761 * 119.99770 * 180.02562 * 9 8 6 12 12 N 1.31442 * 119.99868 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00137 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47096 * 89.99941 * 13 11 9 15 15 H 1.48496 * 109.47158 * 210.00310 * 13 11 9 16 16 H 1.48499 * 109.46999 * 330.00064 * 13 11 9 17 17 C 1.50697 * 117.51765 * 252.52146 * 5 4 2 18 18 C 1.38245 * 119.97512 * 328.36037 * 17 5 4 19 19 C 1.38197 * 120.02744 * 179.76742 * 18 17 5 20 20 C 1.38464 * 119.97188 * 0.50774 * 19 18 17 21 21 F 1.35099 * 120.02451 * 179.76524 * 20 19 18 22 22 C 1.38454 * 119.94863 * 359.75098 * 20 19 18 23 23 C 1.38197 * 119.97451 * 359.97438 * 22 20 19 24 24 H 1.08994 * 109.47441 * 274.32948 * 1 2 3 25 25 H 1.08998 * 109.47138 * 34.33535 * 1 2 3 26 26 H 1.09006 * 109.46950 * 154.32966 * 1 2 3 27 27 H 1.09005 * 109.47309 * 210.44966 * 3 2 1 28 28 H 1.08998 * 109.47171 * 330.44344 * 3 2 1 29 29 H 1.08994 * 109.47417 * 90.45270 * 3 2 1 30 30 H 1.09001 * 117.49902 * 145.02677 * 4 2 1 31 31 H 1.08998 * 117.49990 * 359.97438 * 4 2 1 32 32 H 0.96999 * 119.99851 * 180.02562 * 12 11 9 33 33 H 1.07997 * 119.98615 * 0.02581 * 18 17 5 34 34 H 1.08000 * 120.01868 * 180.25349 * 19 18 17 35 35 H 1.08007 * 120.01298 * 180.02562 * 22 20 19 36 36 H 1.08010 * 119.98699 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1213 -0.7646 5 6 2.2364 -1.1208 0.7654 6 6 1.3719 -2.1401 1.4616 7 8 0.1645 -2.0528 1.4019 8 8 1.9395 -3.1454 2.1481 9 6 1.1087 -4.0235 2.7473 10 1 0.0393 -3.8998 2.6619 11 6 1.6285 -5.0857 3.4732 12 7 0.8192 -5.9416 4.0566 13 14 3.4783 -5.3003 3.6204 14 1 3.9681 -4.5672 4.8153 15 1 3.7998 -6.7434 3.7586 16 1 4.1374 -4.7607 2.4040 17 6 3.5289 -0.7805 1.4616 18 6 4.7367 -1.1125 0.8766 19 6 5.9227 -0.7967 1.5118 20 6 5.9008 -0.1569 2.7396 21 9 7.0595 0.1481 3.3637 22 6 4.6905 0.1703 3.3270 23 6 3.5059 -0.1414 2.6872 24 1 -0.3634 0.0776 1.0247 25 1 -0.3633 0.8486 -0.5796 26 1 -0.3633 -0.9263 -0.4452 27 1 3.1459 1.3260 -0.5208 28 1 1.5401 2.0937 -0.5069 29 1 2.3539 1.7047 1.0276 30 1 3.1716 -0.8757 -1.2679 31 1 1.6112 -1.8592 -1.2673 32 1 1.1825 -6.6839 4.5643 33 1 4.7535 -1.6152 -0.0791 34 1 6.8662 -1.0525 1.0528 35 1 4.6722 0.6698 4.2844 36 1 2.5616 0.1141 3.1451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873440321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:35 Heat of formation + Delta-G solvation = -74.219423 kcal Electronic energy + Delta-G solvation = -21922.995706 eV Core-core repulsion = 18480.980002 eV Total energy + Delta-G solvation = -3442.015704 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.81628 -40.44899 -38.63823 -37.37577 -35.02483 -32.32811 -31.12418 -30.96836 -28.69395 -27.15755 -26.00206 -23.94766 -22.80137 -21.78585 -20.05909 -18.56038 -17.89318 -17.62050 -16.95518 -16.10282 -15.51737 -15.37014 -14.82534 -14.69326 -14.24440 -14.05277 -13.64245 -13.48102 -13.31679 -13.24226 -12.94351 -12.47753 -12.23486 -12.05727 -12.04596 -11.68697 -11.47007 -11.25845 -11.06141 -10.98089 -10.51922 -10.40444 -9.86779 -9.78277 -9.62872 -9.09757 -9.00447 -8.68197 -8.31083 -6.38241 -4.13041 1.20986 1.33179 2.98767 3.22148 3.27834 3.39379 3.61247 3.81753 4.13666 4.25387 4.32683 4.53850 4.78375 4.89075 4.94227 5.04116 5.18396 5.22352 5.31896 5.42320 5.52928 5.75088 5.77556 5.87714 5.97622 6.02002 6.08592 6.15347 6.18796 6.22493 6.27832 6.37759 6.46592 6.63889 6.78908 6.96025 7.73146 8.02760 8.60614 9.00890 9.70634 10.70101 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.008918 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.279203 B = 3138.820692 C = 4868.777016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.081 4.081 3 C -0.114 4.114 4 C -0.145 4.145 5 C -0.085 4.085 6 C 0.446 3.554 7 O -0.529 6.529 8 O -0.241 6.241 9 C -0.380 4.380 10 H 0.110 0.890 11 C 0.069 3.931 12 N -0.874 5.874 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.258 1.258 17 C -0.038 4.038 18 C -0.079 4.079 19 C -0.154 4.154 20 C 0.090 3.910 21 F -0.144 7.144 22 C -0.151 4.151 23 C -0.071 4.071 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.279 0.721 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.623 13.311 -7.375 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.081 4.081 3 C -0.171 4.171 4 C -0.182 4.182 5 C -0.086 4.086 6 C 0.292 3.708 7 O -0.424 6.424 8 O -0.149 6.149 9 C -0.456 4.456 10 H 0.127 0.873 11 C -0.135 4.135 12 N -0.513 5.513 13 Si 0.723 3.277 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.182 1.182 17 C -0.038 4.038 18 C -0.097 4.097 19 C -0.172 4.172 20 C 0.070 3.930 21 F -0.123 7.123 22 C -0.169 4.169 23 C -0.090 4.090 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.090 0.910 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.342 13.130 -7.222 17.151 hybrid contribution 1.011 -0.470 0.490 1.218 sum 9.354 12.660 -6.732 17.120 Atomic orbital electron populations 1.21396 0.90342 1.01356 1.02902 1.21711 0.96002 0.90304 1.00080 1.21393 0.99846 0.93602 1.02253 1.23406 1.02767 1.01479 0.90557 1.19652 0.95061 0.99873 0.94059 1.21486 0.86560 0.82240 0.80509 1.90600 1.15315 1.75091 1.61427 1.83533 1.40929 1.33758 1.56704 1.20651 0.91523 1.04013 1.29376 0.87273 1.24501 0.99749 0.94281 0.94967 1.69603 1.35460 1.14219 1.32009 0.86309 0.84078 0.77386 0.79913 1.19808 1.20740 1.18178 1.18834 0.92348 0.97813 0.94817 1.20865 0.90691 0.97892 1.00285 1.21044 0.99604 1.01737 0.94847 1.17697 0.81426 1.01046 0.92783 1.91472 1.47285 1.91337 1.82225 1.21071 0.91023 1.03542 1.01294 1.20850 0.97930 0.96334 0.93842 0.91112 0.93460 0.91368 0.92311 0.91750 0.91903 0.87733 0.87734 0.91045 0.84885 0.84835 0.84729 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 8.09 37.16 0.30 -1.26 16 2 C -0.08 -1.15 2.70 -154.51 -0.42 -1.57 16 3 C -0.11 -1.28 8.96 37.16 0.33 -0.94 16 4 C -0.15 -2.03 8.72 -26.73 -0.23 -2.26 16 5 C -0.09 -1.47 2.22 -156.81 -0.35 -1.82 16 6 C 0.45 10.35 7.34 36.01 0.26 10.62 16 7 O -0.53 -13.32 12.34 -19.05 -0.24 -13.56 16 8 O -0.24 -6.39 8.27 -20.70 -0.17 -6.56 16 9 C -0.38 -11.27 10.10 30.93 0.31 -10.96 16 10 H 0.11 3.54 7.09 -52.49 -0.37 3.17 16 11 C 0.07 1.99 5.49 -17.53 -0.10 1.89 16 12 N -0.87 -25.99 13.96 55.48 0.77 -25.21 16 13 Si 0.90 21.93 28.62 -169.99 -4.86 17.07 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 16 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 17 C -0.04 -0.60 3.89 -104.62 -0.41 -1.01 16 18 C -0.08 -1.12 9.22 -39.59 -0.37 -1.49 16 19 C -0.15 -2.05 10.03 -39.51 -0.40 -2.45 16 20 C 0.09 1.28 7.30 -39.42 -0.29 0.99 16 21 F -0.14 -2.05 17.27 2.25 0.04 -2.02 16 22 C -0.15 -2.13 10.03 -39.52 -0.40 -2.52 16 23 C -0.07 -1.10 9.00 -39.59 -0.36 -1.46 16 24 H 0.07 1.21 7.26 -51.93 -0.38 0.83 16 25 H 0.05 0.58 7.88 -51.93 -0.41 0.17 16 26 H 0.07 1.15 7.02 -51.93 -0.36 0.79 16 27 H 0.06 0.60 7.88 -51.93 -0.41 0.19 16 28 H 0.06 0.62 7.86 -51.93 -0.41 0.21 16 29 H 0.06 0.72 7.43 -51.93 -0.39 0.33 16 30 H 0.10 1.16 7.05 -51.93 -0.37 0.79 16 31 H 0.10 1.51 8.05 -51.93 -0.42 1.09 16 32 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.13 1.62 7.04 -52.49 -0.37 1.25 16 34 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 311.90 15.07 4.70 4.70 Total: -1.00 -31.98 311.90 -6.13 -38.11 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.28 Total: 1.70 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -2.09 Total: -14.24 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.77 Total: -25.21 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.41 Total: -20.12 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.86 Total: 17.07 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.98 -6.13 -38.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873440321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.108 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds