Wall clock time and date at job start Tue Mar 31 2020 00:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 115.55164 * 2 1 4 4 C 1.53005 * 117.49861 * 214.29145 * 2 1 3 5 5 C 1.53006 * 60.00051 * 252.51194 * 4 2 1 6 6 C 1.50700 * 117.50206 * 107.48551 * 5 4 2 7 7 O 1.21202 * 120.00062 * 291.38751 * 6 5 4 8 8 O 1.34315 * 119.99706 * 111.37535 * 6 5 4 9 9 C 1.34914 * 116.99726 * 180.02562 * 8 6 5 10 10 H 1.07996 * 120.00752 * 0.02562 * 9 8 6 11 11 C 1.38761 * 119.99770 * 180.02562 * 9 8 6 12 12 N 1.31442 * 119.99868 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00137 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47096 * 89.99941 * 13 11 9 15 15 H 1.48496 * 109.47158 * 210.00310 * 13 11 9 16 16 H 1.48499 * 109.46999 * 330.00064 * 13 11 9 17 17 C 1.50697 * 117.51765 * 252.52146 * 5 4 2 18 18 C 1.38245 * 119.97512 * 328.36037 * 17 5 4 19 19 C 1.38197 * 120.02744 * 179.76742 * 18 17 5 20 20 C 1.38464 * 119.97188 * 0.50774 * 19 18 17 21 21 F 1.35099 * 120.02451 * 179.76524 * 20 19 18 22 22 C 1.38454 * 119.94863 * 359.75098 * 20 19 18 23 23 C 1.38197 * 119.97451 * 359.97438 * 22 20 19 24 24 H 1.08994 * 109.47441 * 274.32948 * 1 2 3 25 25 H 1.08998 * 109.47138 * 34.33535 * 1 2 3 26 26 H 1.09006 * 109.46950 * 154.32966 * 1 2 3 27 27 H 1.09005 * 109.47309 * 210.44966 * 3 2 1 28 28 H 1.08998 * 109.47171 * 330.44344 * 3 2 1 29 29 H 1.08994 * 109.47417 * 90.45270 * 3 2 1 30 30 H 1.09001 * 117.49902 * 145.02677 * 4 2 1 31 31 H 1.08998 * 117.49990 * 359.97438 * 4 2 1 32 32 H 0.96999 * 119.99851 * 180.02562 * 12 11 9 33 33 H 1.07997 * 119.98615 * 0.02581 * 18 17 5 34 34 H 1.08000 * 120.01868 * 180.25349 * 19 18 17 35 35 H 1.08007 * 120.01298 * 180.02562 * 22 20 19 36 36 H 1.08010 * 119.98699 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1213 -0.7646 5 6 2.2364 -1.1208 0.7654 6 6 1.3719 -2.1401 1.4616 7 8 0.1645 -2.0528 1.4019 8 8 1.9395 -3.1454 2.1481 9 6 1.1087 -4.0235 2.7473 10 1 0.0393 -3.8998 2.6619 11 6 1.6285 -5.0857 3.4732 12 7 0.8192 -5.9416 4.0566 13 14 3.4783 -5.3003 3.6204 14 1 3.9681 -4.5672 4.8153 15 1 3.7998 -6.7434 3.7586 16 1 4.1374 -4.7607 2.4040 17 6 3.5289 -0.7805 1.4616 18 6 4.7367 -1.1125 0.8766 19 6 5.9227 -0.7967 1.5118 20 6 5.9008 -0.1569 2.7396 21 9 7.0595 0.1481 3.3637 22 6 4.6905 0.1703 3.3270 23 6 3.5059 -0.1414 2.6872 24 1 -0.3634 0.0776 1.0247 25 1 -0.3633 0.8486 -0.5796 26 1 -0.3633 -0.9263 -0.4452 27 1 3.1459 1.3260 -0.5208 28 1 1.5401 2.0937 -0.5069 29 1 2.3539 1.7047 1.0276 30 1 3.1716 -0.8757 -1.2679 31 1 1.6112 -1.8592 -1.2673 32 1 1.1825 -6.6839 4.5643 33 1 4.7535 -1.6152 -0.0791 34 1 6.8662 -1.0525 1.0528 35 1 4.6722 0.6698 4.2844 36 1 2.5616 0.1141 3.1451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873440321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:35 Heat of formation + Delta-G solvation = -91.633017 kcal Electronic energy + Delta-G solvation = -21923.750817 eV Core-core repulsion = 18480.980002 eV Total energy + Delta-G solvation = -3442.770815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -49.88798 -41.91897 -40.20167 -38.71710 -36.93748 -34.52636 -32.22114 -32.09271 -29.80143 -28.29530 -27.96217 -25.41473 -23.88300 -23.21093 -21.43403 -20.26594 -19.74085 -18.90729 -18.40269 -17.24578 -17.13347 -16.61302 -16.54675 -15.99643 -15.97033 -15.43125 -14.86796 -14.65774 -14.53070 -14.42665 -14.32775 -14.15809 -13.89394 -13.33669 -13.23700 -13.09568 -12.76378 -12.69327 -12.41602 -12.30176 -12.17277 -12.03512 -11.89543 -11.15610 -10.95335 -10.86448 -10.75424 -10.06151 -9.50068 -8.58040 -6.42548 0.09282 0.27014 1.20466 1.27639 1.43039 1.49739 2.20304 2.27858 2.46273 2.75259 2.93607 3.24427 3.36773 3.69967 3.73503 3.88017 3.97950 4.11438 4.15443 4.33190 4.45662 4.58771 4.73488 4.81245 4.86091 4.94116 5.00500 5.05174 5.07129 5.10142 5.12991 5.24693 5.31197 5.45207 5.52181 5.57575 5.87863 5.89588 6.52691 6.80997 7.62180 8.55074 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.008918 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.279203 B = 3138.820692 C = 4868.777016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.071 4.071 3 C -0.108 4.108 4 C -0.124 4.124 5 C -0.109 4.109 6 C 0.446 3.554 7 O -0.559 6.559 8 O -0.252 6.252 9 C -0.403 4.403 10 H 0.059 0.941 11 C 0.021 3.979 12 N -0.916 5.916 13 Si 0.970 3.030 14 H -0.265 1.265 15 H -0.263 1.263 16 H -0.249 1.249 17 C -0.051 4.051 18 C -0.080 4.080 19 C -0.146 4.146 20 C 0.082 3.918 21 F -0.145 7.145 22 C -0.152 4.152 23 C -0.088 4.088 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.146 0.854 31 H 0.095 0.905 32 H 0.289 0.711 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.150 0.850 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.004 14.678 -8.953 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.071 4.071 3 C -0.165 4.165 4 C -0.161 4.161 5 C -0.110 4.110 6 C 0.293 3.707 7 O -0.454 6.454 8 O -0.161 6.161 9 C -0.479 4.479 10 H 0.077 0.923 11 C -0.179 4.179 12 N -0.556 5.556 13 Si 0.790 3.210 14 H -0.190 1.190 15 H -0.188 1.188 16 H -0.173 1.173 17 C -0.051 4.051 18 C -0.097 4.097 19 C -0.164 4.164 20 C 0.063 3.937 21 F -0.123 7.123 22 C -0.171 4.171 23 C -0.106 4.106 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.164 0.836 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.174 0.826 34 H 0.181 0.819 35 H 0.168 0.832 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.701 14.512 -8.810 20.618 hybrid contribution -0.194 -0.793 0.938 1.243 sum 11.507 13.719 -7.872 19.560 Atomic orbital electron populations 1.21346 0.91672 1.01552 1.01401 1.21918 0.95176 0.91730 0.98248 1.21421 1.00902 0.91541 1.02639 1.23619 1.04211 1.00438 0.87797 1.19663 0.95758 0.99890 0.95686 1.22928 0.87269 0.81774 0.78720 1.90589 1.17298 1.75589 1.61930 1.83554 1.40201 1.34466 1.57862 1.20309 0.89949 1.06027 1.31571 0.92312 1.25421 1.05271 0.93314 0.93893 1.69695 1.38012 1.15061 1.32837 0.85253 0.77099 0.78365 0.80271 1.18952 1.18750 1.17292 1.18817 0.92246 0.98877 0.95185 1.21120 0.89978 0.97432 1.01206 1.21355 1.00578 1.00328 0.94166 1.17869 0.81298 1.01252 0.93301 1.91475 1.47179 1.91360 1.82317 1.21220 0.90691 1.03332 1.01859 1.20872 0.98087 0.97344 0.94306 0.94021 0.89912 0.93933 0.90354 0.89686 0.92330 0.83577 0.88699 0.90158 0.82563 0.81926 0.83248 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.11 8.09 71.98 0.58 -2.53 16 2 C -0.07 -1.88 2.70 -52.18 -0.14 -2.02 16 3 C -0.11 -2.05 8.96 71.98 0.64 -1.41 16 4 C -0.12 -3.13 8.72 30.60 0.27 -2.87 16 5 C -0.11 -3.64 2.22 -53.67 -0.12 -3.76 16 6 C 0.45 21.39 7.34 71.24 0.52 21.91 16 7 O -0.56 -29.92 12.34 20.80 0.26 -29.66 16 8 O -0.25 -13.71 8.27 14.89 0.12 -13.59 16 9 C -0.40 -25.12 10.10 67.94 0.69 -24.43 16 10 H 0.06 4.15 7.09 -2.91 -0.02 4.12 16 11 C 0.02 1.25 5.49 84.88 0.47 1.71 16 12 N -0.92 -56.20 13.96 21.63 0.30 -55.90 16 13 Si 0.97 45.08 28.62 68.60 1.96 47.04 16 14 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 15 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 16 H -0.25 -11.16 7.11 99.48 0.71 -10.45 16 17 C -0.05 -1.52 3.89 -19.86 -0.08 -1.60 16 18 C -0.08 -1.95 9.22 22.26 0.21 -1.74 16 19 C -0.15 -3.30 10.03 22.31 0.22 -3.07 16 20 C 0.08 2.09 7.30 22.38 0.16 2.25 16 21 F -0.14 -3.69 17.27 44.97 0.78 -2.91 16 22 C -0.15 -4.03 10.03 22.31 0.22 -3.80 16 23 C -0.09 -2.63 9.00 22.26 0.20 -2.43 16 24 H 0.04 1.48 7.26 -2.39 -0.02 1.47 16 25 H 0.08 1.88 7.88 -2.39 -0.02 1.86 16 26 H 0.04 1.47 7.02 -2.38 -0.02 1.46 16 27 H 0.08 1.21 7.88 -2.38 -0.02 1.19 16 28 H 0.08 1.28 7.86 -2.39 -0.02 1.27 16 29 H 0.06 1.19 7.43 -2.39 -0.02 1.17 16 30 H 0.15 2.48 7.05 -2.39 -0.02 2.47 16 31 H 0.09 2.60 8.05 -2.39 -0.02 2.58 16 32 H 0.29 16.00 8.31 -92.71 -0.77 15.23 16 33 H 0.16 3.02 7.04 -2.91 -0.02 3.00 16 34 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 36 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -73.88 311.90 8.36 -65.52 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.09 Total: 13.29 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 3.85 Total: -23.79 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.30 Total: -55.90 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: 0.38 Total: -43.25 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.78 Total: -2.91 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.96 Total: 47.04 kcal Total: -73.88 8.36 -65.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873440321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.114 kcal (2) G-P(sol) polarization free energy of solvation -73.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds