Wall clock time and date at job start Tue Mar 31 2020 00:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 115.55342 * 2 1 4 4 C 1.53073 * 117.49340 * 214.26977 * 2 1 3 5 5 C 1.52998 * 59.98766 * 252.51779 * 4 2 1 6 6 C 1.50701 * 117.49974 * 252.50069 * 5 4 2 7 7 O 1.21210 * 119.99651 * 68.74316 * 6 5 4 8 8 O 1.34308 * 119.99992 * 248.74466 * 6 5 4 9 9 C 1.34921 * 117.00223 * 180.02562 * 8 6 5 10 10 H 1.08005 * 119.99258 * 359.97438 * 9 8 6 11 11 C 1.38746 * 120.00143 * 180.02562 * 9 8 6 12 12 N 1.31446 * 120.00276 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99864 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46864 * 269.99383 * 13 11 9 15 15 H 1.48494 * 109.47256 * 29.99351 * 13 11 9 16 16 H 1.48502 * 109.47170 * 149.99929 * 13 11 9 17 17 C 1.50704 * 117.50204 * 107.49873 * 5 4 2 18 18 C 1.38237 * 119.97398 * 211.18156 * 17 5 4 19 19 C 1.38208 * 120.02172 * 179.76634 * 18 17 5 20 20 C 1.38457 * 119.97350 * 0.50796 * 19 18 17 21 21 F 1.35099 * 120.02690 * 179.76711 * 20 19 18 22 22 C 1.38458 * 119.95041 * 359.74790 * 20 19 18 23 23 C 1.38199 * 119.97241 * 359.97438 * 22 20 19 24 24 H 1.08998 * 109.47547 * 279.74326 * 1 2 3 25 25 H 1.09001 * 109.46984 * 39.74011 * 1 2 3 26 26 H 1.08997 * 109.47619 * 159.73478 * 1 2 3 27 27 H 1.08992 * 109.47357 * 205.66606 * 3 2 1 28 28 H 1.09000 * 109.47174 * 325.67202 * 3 2 1 29 29 H 1.09006 * 109.46785 * 85.66574 * 3 2 1 30 30 H 1.09000 * 117.51579 * 145.03835 * 4 2 1 31 31 H 1.09008 * 117.49645 * 0.02562 * 4 2 1 32 32 H 0.97000 * 119.99311 * 0.02562 * 12 11 9 33 33 H 1.07995 * 119.99480 * 0.02562 * 18 17 5 34 34 H 1.07996 * 120.01269 * 180.25627 * 19 18 17 35 35 H 1.07996 * 120.01710 * 179.97438 * 22 20 19 36 36 H 1.08003 * 119.98899 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2367 -1.1221 -0.7646 5 6 2.2364 -1.1208 0.7654 6 6 3.5292 -0.7808 1.4612 7 8 3.9706 0.3466 1.4025 8 8 4.1922 -1.7269 2.1462 9 6 5.3425 -1.3561 2.7459 10 1 5.6912 -0.3373 2.6620 11 6 6.0780 -2.2838 3.4695 12 7 5.6538 -3.5238 3.5712 13 14 7.6702 -1.7702 4.3004 14 1 8.8047 -1.9718 3.3637 15 1 7.5905 -0.3369 4.6802 16 1 7.8813 -2.5940 5.5179 17 6 1.3719 -2.1399 1.4620 18 6 0.8086 -1.8443 2.6893 19 6 0.0116 -2.7763 3.3268 20 6 -0.2138 -4.0103 2.7407 21 9 -0.9888 -4.9239 3.3651 22 6 0.3553 -4.3071 1.5139 23 6 1.1471 -3.3715 0.8756 24 1 -0.3634 0.1739 1.0128 25 1 -0.3633 0.7902 -0.6570 26 1 -0.3634 -0.9640 -0.3559 27 1 3.1823 1.3086 -0.4451 28 1 1.5810 2.0742 -0.5795 29 1 2.2766 1.7415 1.0248 30 1 3.1719 -0.8771 -1.2680 31 1 1.6113 -1.8597 -1.2677 32 1 4.8268 -3.7903 3.1400 33 1 0.9878 -0.8833 3.1483 34 1 -0.4318 -2.5437 4.2837 35 1 0.1805 -5.2694 1.0559 36 1 1.5915 -3.6029 -0.0812 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873440322.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:50 Heat of formation + Delta-G solvation = -83.039280 kcal Electronic energy + Delta-G solvation = -21862.629912 eV Core-core repulsion = 18420.231749 eV Total energy + Delta-G solvation = -3442.398162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -48.74172 -40.37268 -38.54199 -37.30837 -34.97654 -32.13529 -31.04406 -30.87347 -28.63524 -27.14639 -25.46407 -23.84213 -22.73519 -21.85698 -20.19621 -18.57277 -18.00834 -17.54472 -16.77642 -16.02494 -15.44794 -15.21672 -14.94710 -14.61340 -14.14216 -13.86514 -13.74251 -13.53113 -13.39481 -13.18013 -13.03474 -12.64692 -12.06278 -12.02837 -11.68515 -11.48079 -11.15993 -11.03463 -10.93911 -10.87311 -10.49006 -10.25992 -9.83719 -9.72734 -9.65354 -9.01062 -8.92832 -8.51846 -8.22690 -6.73540 -4.10266 1.29088 1.40917 3.05402 3.28073 3.38612 3.49504 3.68724 3.82969 4.11812 4.39963 4.41888 4.59162 4.84365 4.95213 5.01345 5.11414 5.25014 5.26643 5.38053 5.49293 5.60079 5.77827 5.79381 5.90756 6.02107 6.05001 6.13838 6.18680 6.23959 6.26015 6.36488 6.39575 6.61377 6.72172 6.81874 7.03617 7.62211 8.42885 8.50104 9.06595 9.77732 10.71203 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.007259 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.292926 B = 3856.476189 C = 5401.682639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.101 4.101 4 C -0.146 4.146 5 C -0.082 4.082 6 C 0.436 3.564 7 O -0.542 6.542 8 O -0.226 6.226 9 C -0.463 4.463 10 H 0.087 0.913 11 C 0.014 3.986 12 N -0.880 5.880 13 Si 1.099 2.901 14 H -0.281 1.281 15 H -0.282 1.282 16 H -0.276 1.276 17 C -0.036 4.036 18 C -0.071 4.071 19 C -0.150 4.150 20 C 0.091 3.909 21 F -0.145 7.145 22 C -0.152 4.152 23 C -0.079 4.079 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.281 0.719 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.827 1.985 -6.099 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.158 4.158 4 C -0.183 4.183 5 C -0.083 4.083 6 C 0.283 3.717 7 O -0.439 6.439 8 O -0.133 6.133 9 C -0.539 4.539 10 H 0.105 0.895 11 C -0.192 4.192 12 N -0.513 5.513 13 Si 0.923 3.077 14 H -0.207 1.207 15 H -0.208 1.208 16 H -0.201 1.201 17 C -0.036 4.036 18 C -0.089 4.089 19 C -0.169 4.169 20 C 0.072 3.928 21 F -0.123 7.123 22 C -0.170 4.170 23 C -0.097 4.097 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.463 1.639 -5.115 11.761 hybrid contribution -1.266 0.260 -0.742 1.490 sum -11.729 1.899 -5.857 13.247 Atomic orbital electron populations 1.21362 0.91577 1.01888 1.02139 1.21712 0.94549 0.91711 1.00348 1.21356 0.99602 0.92081 1.02771 1.23374 1.02932 1.01193 0.90817 1.19630 0.94117 1.00634 0.93900 1.21564 0.85153 0.84051 0.80971 1.90557 1.68729 1.22299 1.62291 1.83612 1.34439 1.39353 1.55887 1.22141 0.98076 1.00126 1.33529 0.89536 1.26572 1.03725 0.92952 0.95936 1.70514 1.23480 1.16969 1.40352 0.83055 0.72675 0.75433 0.76491 1.20723 1.20754 1.20129 1.18808 0.96301 0.93754 0.94737 1.20792 0.94835 0.99365 0.93871 1.21042 1.01794 0.92803 1.01212 1.17669 0.94798 0.87588 0.92782 1.91469 1.72807 1.65843 1.82224 1.21023 1.00285 1.00918 0.94809 1.20838 0.96594 0.92035 1.00232 0.91978 0.91802 0.92327 0.91475 0.93552 0.91235 0.87933 0.87795 0.90845 0.85311 0.84860 0.84863 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 8.86 37.16 0.33 -1.02 16 2 C -0.08 -1.25 2.70 -154.47 -0.42 -1.67 16 3 C -0.10 -1.60 8.09 37.15 0.30 -1.30 16 4 C -0.15 -2.19 8.72 -26.69 -0.23 -2.43 16 5 C -0.08 -1.50 2.22 -156.81 -0.35 -1.84 16 6 C 0.44 10.64 7.34 36.01 0.26 10.90 16 7 O -0.54 -14.03 12.34 -19.05 -0.24 -14.27 16 8 O -0.23 -6.38 8.84 -20.70 -0.18 -6.56 16 9 C -0.46 -13.77 9.64 30.92 0.30 -13.47 16 10 H 0.09 2.62 6.86 -52.48 -0.36 2.26 16 11 C 0.01 0.39 5.49 -17.53 -0.10 0.30 16 12 N -0.88 -26.49 13.69 55.48 0.76 -25.73 16 13 Si 1.10 24.81 29.92 -169.99 -5.09 19.73 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 17 C -0.04 -0.61 3.81 -104.62 -0.40 -1.01 16 18 C -0.07 -1.18 9.51 -39.59 -0.38 -1.55 16 19 C -0.15 -2.28 10.03 -39.51 -0.40 -2.68 16 20 C 0.09 1.39 7.30 -39.42 -0.29 1.10 16 21 F -0.14 -2.19 17.27 2.25 0.04 -2.15 16 22 C -0.15 -2.18 10.03 -39.51 -0.40 -2.58 16 23 C -0.08 -1.20 9.22 -39.59 -0.37 -1.57 16 24 H 0.06 0.75 8.03 -51.93 -0.42 0.33 16 25 H 0.06 0.65 8.01 -51.93 -0.42 0.23 16 26 H 0.06 0.66 7.81 -51.93 -0.41 0.25 16 27 H 0.07 1.18 7.02 -51.93 -0.36 0.81 16 28 H 0.05 0.59 7.99 -51.93 -0.41 0.17 16 29 H 0.07 1.24 7.26 -51.93 -0.38 0.86 16 30 H 0.10 1.59 8.05 -51.93 -0.42 1.18 16 31 H 0.10 1.26 7.09 -51.92 -0.37 0.89 16 32 H 0.28 8.64 7.97 -40.82 -0.33 8.31 16 33 H 0.13 2.13 8.06 -52.49 -0.42 1.70 16 34 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.13 1.76 7.03 -52.48 -0.37 1.39 16 LS Contribution 313.63 15.07 4.73 4.73 Total: -1.00 -32.77 313.63 -6.40 -39.17 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.30 Total: 3.90 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -2.12 Total: -18.81 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.76 Total: -25.73 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.42 Total: -20.83 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.09 Total: 19.73 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.77 -6.40 -39.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873440322.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.873 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds