Wall clock time and date at job start Tue Mar 31 2020 00:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 115.55342 * 2 1 4 4 C 1.53073 * 117.49340 * 214.26977 * 2 1 3 5 5 C 1.52998 * 59.98766 * 252.51779 * 4 2 1 6 6 C 1.50701 * 117.49974 * 252.50069 * 5 4 2 7 7 O 1.21210 * 119.99651 * 68.74316 * 6 5 4 8 8 O 1.34308 * 119.99992 * 248.74466 * 6 5 4 9 9 C 1.34921 * 117.00223 * 180.02562 * 8 6 5 10 10 H 1.08005 * 119.99258 * 359.97438 * 9 8 6 11 11 C 1.38746 * 120.00143 * 180.02562 * 9 8 6 12 12 N 1.31446 * 120.00276 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99864 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46864 * 269.99383 * 13 11 9 15 15 H 1.48494 * 109.47256 * 29.99351 * 13 11 9 16 16 H 1.48502 * 109.47170 * 149.99929 * 13 11 9 17 17 C 1.50704 * 117.50204 * 107.49873 * 5 4 2 18 18 C 1.38237 * 119.97398 * 211.18156 * 17 5 4 19 19 C 1.38208 * 120.02172 * 179.76634 * 18 17 5 20 20 C 1.38457 * 119.97350 * 0.50796 * 19 18 17 21 21 F 1.35099 * 120.02690 * 179.76711 * 20 19 18 22 22 C 1.38458 * 119.95041 * 359.74790 * 20 19 18 23 23 C 1.38199 * 119.97241 * 359.97438 * 22 20 19 24 24 H 1.08998 * 109.47547 * 279.74326 * 1 2 3 25 25 H 1.09001 * 109.46984 * 39.74011 * 1 2 3 26 26 H 1.08997 * 109.47619 * 159.73478 * 1 2 3 27 27 H 1.08992 * 109.47357 * 205.66606 * 3 2 1 28 28 H 1.09000 * 109.47174 * 325.67202 * 3 2 1 29 29 H 1.09006 * 109.46785 * 85.66574 * 3 2 1 30 30 H 1.09000 * 117.51579 * 145.03835 * 4 2 1 31 31 H 1.09008 * 117.49645 * 0.02562 * 4 2 1 32 32 H 0.97000 * 119.99311 * 0.02562 * 12 11 9 33 33 H 1.07995 * 119.99480 * 0.02562 * 18 17 5 34 34 H 1.07996 * 120.01269 * 180.25627 * 19 18 17 35 35 H 1.07996 * 120.01710 * 179.97438 * 22 20 19 36 36 H 1.08003 * 119.98899 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2367 -1.1221 -0.7646 5 6 2.2364 -1.1208 0.7654 6 6 3.5292 -0.7808 1.4612 7 8 3.9706 0.3466 1.4025 8 8 4.1922 -1.7269 2.1462 9 6 5.3425 -1.3561 2.7459 10 1 5.6912 -0.3373 2.6620 11 6 6.0780 -2.2838 3.4695 12 7 5.6538 -3.5238 3.5712 13 14 7.6702 -1.7702 4.3004 14 1 8.8047 -1.9718 3.3637 15 1 7.5905 -0.3369 4.6802 16 1 7.8813 -2.5940 5.5179 17 6 1.3719 -2.1399 1.4620 18 6 0.8086 -1.8443 2.6893 19 6 0.0116 -2.7763 3.3268 20 6 -0.2138 -4.0103 2.7407 21 9 -0.9888 -4.9239 3.3651 22 6 0.3553 -4.3071 1.5139 23 6 1.1471 -3.3715 0.8756 24 1 -0.3634 0.1739 1.0128 25 1 -0.3633 0.7902 -0.6570 26 1 -0.3634 -0.9640 -0.3559 27 1 3.1823 1.3086 -0.4451 28 1 1.5810 2.0742 -0.5795 29 1 2.2766 1.7415 1.0248 30 1 3.1719 -0.8771 -1.2680 31 1 1.6113 -1.8597 -1.2677 32 1 4.8268 -3.7903 3.1400 33 1 0.9878 -0.8833 3.1483 34 1 -0.4318 -2.5437 4.2837 35 1 0.1805 -5.2694 1.0559 36 1 1.5915 -3.6029 -0.0812 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873440322.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:40 Heat of formation + Delta-G solvation = -100.702051 kcal Electronic energy + Delta-G solvation = -21863.395827 eV Core-core repulsion = 18420.231749 eV Total energy + Delta-G solvation = -3443.164077 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 11.12 seconds Orbital eigenvalues (eV) -49.92980 -41.91843 -40.20984 -38.74944 -36.95898 -34.30540 -32.24826 -32.11963 -29.82193 -28.33175 -27.42765 -25.49055 -23.94132 -23.39896 -21.66495 -20.14875 -19.94670 -18.88724 -18.34169 -17.31164 -17.20663 -16.66235 -16.58742 -16.10361 -15.61577 -15.51711 -15.35971 -14.72056 -14.62381 -14.38999 -14.32026 -14.03651 -13.31742 -13.21154 -13.17384 -13.00220 -12.83902 -12.66763 -12.35839 -12.22317 -12.09031 -11.96877 -11.86186 -11.19011 -10.97960 -10.77978 -10.67401 -10.11138 -9.53327 -9.03264 -6.42381 0.05615 0.22069 1.25897 1.44745 1.64049 1.75689 2.13235 2.42287 2.52159 2.78285 3.00433 3.20024 3.32163 3.65234 3.70530 3.83441 3.93112 4.10001 4.14183 4.28162 4.41399 4.61896 4.68503 4.76728 4.81336 4.87964 4.95765 4.99736 5.02056 5.04736 5.07650 5.19841 5.25093 5.30721 5.47218 5.51370 5.85001 6.15292 6.40096 6.88698 7.65074 8.42706 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.007259 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.292926 B = 3856.476189 C = 5401.682639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.069 4.069 3 C -0.100 4.100 4 C -0.127 4.127 5 C -0.110 4.110 6 C 0.437 3.563 7 O -0.564 6.564 8 O -0.254 6.254 9 C -0.491 4.491 10 H 0.069 0.931 11 C -0.026 4.026 12 N -0.899 5.899 13 Si 1.143 2.857 14 H -0.260 1.260 15 H -0.271 1.271 16 H -0.264 1.264 17 C -0.048 4.048 18 C -0.088 4.088 19 C -0.152 4.152 20 C 0.083 3.917 21 F -0.144 7.144 22 C -0.145 4.145 23 C -0.081 4.081 24 H 0.058 0.942 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.093 0.907 31 H 0.143 0.857 32 H 0.265 0.735 33 H 0.118 0.882 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.045 1.575 -7.317 15.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.070 4.070 3 C -0.157 4.157 4 C -0.164 4.164 5 C -0.111 4.111 6 C 0.285 3.715 7 O -0.461 6.461 8 O -0.163 6.163 9 C -0.567 4.567 10 H 0.087 0.913 11 C -0.225 4.225 12 N -0.533 5.533 13 Si 0.959 3.041 14 H -0.185 1.185 15 H -0.196 1.196 16 H -0.188 1.188 17 C -0.048 4.048 18 C -0.107 4.107 19 C -0.170 4.170 20 C 0.063 3.937 21 F -0.123 7.123 22 C -0.163 4.163 23 C -0.099 4.099 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.111 0.889 31 H 0.161 0.839 32 H 0.074 0.926 33 H 0.136 0.864 34 H 0.168 0.832 35 H 0.180 0.820 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.710 1.240 -6.358 13.382 hybrid contribution -0.987 0.486 -0.438 1.184 sum -12.697 1.726 -6.796 14.505 Atomic orbital electron populations 1.21395 0.88557 1.03726 1.02723 1.21941 0.96512 0.90460 0.98040 1.21312 0.99296 0.93697 1.01426 1.23570 1.03094 1.01650 0.88048 1.19663 0.91903 1.03951 0.95569 1.22918 0.86228 0.83214 0.79185 1.90534 1.69837 1.23149 1.62583 1.83660 1.34556 1.40742 1.57364 1.22256 0.99479 0.99777 1.35162 0.91296 1.28296 1.06427 0.92212 0.95561 1.70644 1.23224 1.17849 1.41542 0.82599 0.69256 0.75862 0.76364 1.18521 1.19561 1.18831 1.18816 0.96611 0.94313 0.95086 1.20819 0.95949 0.99530 0.94364 1.21207 1.01340 0.92674 1.01793 1.17829 0.95000 0.87555 0.93270 1.91472 1.72781 1.65714 1.82285 1.21337 0.98995 1.01784 0.94213 1.21080 0.96518 0.91181 1.01143 0.92340 0.89205 0.90919 0.93895 0.89781 0.93974 0.88868 0.83931 0.92572 0.86433 0.83240 0.82002 0.82957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.23 8.86 71.98 0.64 -1.59 16 2 C -0.07 -1.98 2.70 -52.16 -0.14 -2.12 16 3 C -0.10 -3.12 8.09 71.98 0.58 -2.54 16 4 C -0.13 -3.55 8.72 30.62 0.27 -3.28 16 5 C -0.11 -3.99 2.22 -53.67 -0.12 -4.11 16 6 C 0.44 22.05 7.34 71.24 0.52 22.57 16 7 O -0.56 -30.51 12.34 20.77 0.26 -30.26 16 8 O -0.25 -14.97 8.84 14.89 0.13 -14.84 16 9 C -0.49 -30.36 9.64 67.94 0.66 -29.70 16 10 H 0.07 4.38 6.86 -2.91 -0.02 4.36 16 11 C -0.03 -1.51 5.49 84.87 0.47 -1.05 16 12 N -0.90 -55.25 13.69 21.62 0.30 -54.96 16 13 Si 1.14 49.98 29.92 68.60 2.05 52.03 16 14 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 15 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 16 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 17 C -0.05 -1.60 3.81 -19.86 -0.08 -1.68 16 18 C -0.09 -2.96 9.51 22.26 0.21 -2.75 16 19 C -0.15 -4.51 10.03 22.31 0.22 -4.28 16 20 C 0.08 2.38 7.30 22.37 0.16 2.55 16 21 F -0.14 -4.09 17.27 44.97 0.78 -3.32 16 22 C -0.14 -3.81 10.03 22.31 0.22 -3.58 16 23 C -0.08 -2.30 9.22 22.26 0.21 -2.10 16 24 H 0.06 1.28 8.03 -2.39 -0.02 1.26 16 25 H 0.09 1.43 8.01 -2.39 -0.02 1.41 16 26 H 0.07 1.34 7.81 -2.39 -0.02 1.32 16 27 H 0.04 1.51 7.02 -2.39 -0.02 1.50 16 28 H 0.08 1.95 7.99 -2.39 -0.02 1.93 16 29 H 0.04 1.53 7.26 -2.38 -0.02 1.51 16 30 H 0.09 2.79 8.05 -2.39 -0.02 2.77 16 31 H 0.14 2.87 7.09 -2.38 -0.02 2.85 16 32 H 0.27 16.83 7.97 -92.71 -0.74 16.10 16 33 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 34 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 36 H 0.15 3.58 7.03 -2.91 -0.02 3.56 16 Total: -1.00 -74.35 313.63 8.46 -65.89 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 1.12 Total: 19.11 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.82 Total: -33.66 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.30 Total: -54.96 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: 0.39 Total: -45.10 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.78 Total: -3.32 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.03 kcal Total: -74.35 8.46 -65.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873440322.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.810 kcal (2) G-P(sol) polarization free energy of solvation -74.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.12 seconds