Wall clock time and date at job start Tue Mar 31 2020 00:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37954 * 120.07643 * 2 1 4 4 C 1.38361 * 120.15086 * 180.02562 * 3 2 1 5 5 C 1.38400 * 120.31042 * 0.27703 * 4 3 2 6 6 N 1.48021 * 119.92092 * 179.70296 * 5 4 3 7 7 O 1.31698 * 120.00269 * 37.48520 * 6 5 4 8 8 O 1.31703 * 119.99495 * 217.48035 * 6 5 4 9 9 C 1.37904 * 120.15231 * 359.44356 * 5 4 3 10 10 C 1.50704 * 120.07699 * 180.27645 * 9 5 4 11 11 C 1.39649 * 120.07984 * 180.02562 * 2 1 3 12 12 C 1.47698 * 120.15342 * 0.02562 * 11 2 1 13 13 O 1.21472 * 119.99847 * 89.99273 * 12 11 2 14 14 N 1.34780 * 119.99659 * 270.00156 * 12 11 2 15 15 C 1.46495 * 120.00237 * 359.97438 * 14 12 11 16 16 C 1.33330 * 119.99574 * 180.02562 * 14 12 11 17 17 H 1.08003 * 120.00107 * 314.28998 * 16 14 12 18 18 C 1.46783 * 120.00036 * 134.29815 * 16 14 12 19 19 N 1.29323 * 119.99704 * 183.58489 * 18 16 14 20 20 Si 1.86801 * 120.00084 * 3.57775 * 18 16 14 21 21 H 1.48494 * 109.46953 * 85.30658 * 20 18 16 22 22 H 1.48503 * 109.47323 * 205.30857 * 20 18 16 23 23 H 1.48500 * 109.46710 * 325.30656 * 20 18 16 24 24 H 1.08997 * 109.47152 * 90.00265 * 1 2 3 25 25 H 1.09004 * 109.47175 * 210.00107 * 1 2 3 26 26 H 1.08996 * 109.47418 * 329.99758 * 1 2 3 27 27 H 1.07997 * 119.92727 * 0.04484 * 3 2 1 28 28 H 1.08006 * 119.84328 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47568 * 275.79631 * 10 9 5 30 30 H 1.09005 * 109.47342 * 35.80171 * 10 9 5 31 31 H 1.09007 * 109.47012 * 155.79699 * 10 9 5 32 32 H 1.08996 * 109.47157 * 84.85309 * 15 14 12 33 33 H 1.08999 * 109.47242 * 204.85457 * 15 14 12 34 34 H 1.08998 * 109.47271 * 324.85014 * 15 14 12 35 35 H 0.97008 * 119.99440 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1938 0.0000 4 6 3.5819 1.1956 -0.0005 5 6 4.2820 0.0017 -0.0069 6 7 5.7621 0.0137 -0.0140 7 8 6.4167 0.9223 0.6791 8 8 6.4244 -0.8844 -0.7135 9 6 3.6037 -1.1990 -0.0011 10 6 4.3677 -2.4980 -0.0017 11 6 2.2069 -1.2084 -0.0005 12 6 1.4736 -2.4905 -0.0017 13 8 1.1724 -3.0169 -1.0541 14 7 1.1386 -3.0762 1.1651 15 6 1.5022 -2.4415 2.4343 16 6 0.4771 -4.2338 1.1640 17 1 -0.3717 -4.3702 0.5103 18 6 0.9023 -5.3229 2.0514 19 7 0.3048 -6.4687 2.0010 20 14 2.3067 -5.0540 3.2534 21 1 1.7807 -4.4431 4.5005 22 1 2.9431 -6.3576 3.5710 23 1 3.3128 -4.1474 2.6442 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6584 2.1291 0.0007 28 1 4.1182 2.1331 -0.0010 29 1 4.6367 -2.7609 -1.0247 30 1 5.2731 -2.3874 0.5951 31 1 3.7459 -3.2855 0.4243 32 1 0.7438 -1.7063 2.7033 33 1 1.5660 -3.1998 3.2146 34 1 2.4675 -1.9461 2.3294 35 1 0.5861 -7.1886 2.5873 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874256478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:00 Heat of formation + Delta-G solvation = 36.942697 kcal Electronic energy + Delta-G solvation = -22174.759075 eV Core-core repulsion = 18757.483684 eV Total energy + Delta-G solvation = -3417.275392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 5.12 seconds Orbital eigenvalues (eV) -40.77835 -38.98496 -37.81419 -34.99625 -34.53239 -33.78961 -32.70155 -32.16896 -28.67646 -27.82311 -26.75297 -25.30133 -24.99492 -22.79470 -21.05190 -19.77399 -18.13864 -18.05435 -17.33273 -16.69367 -16.16370 -15.78899 -15.49617 -15.37374 -14.44002 -14.10865 -13.87670 -13.63978 -13.19960 -12.94231 -12.86977 -12.54227 -12.39795 -12.17412 -12.04190 -11.95091 -11.92307 -11.56426 -11.32865 -11.12902 -10.93145 -10.57694 -10.49364 -10.03570 -9.35114 -9.21920 -9.11906 -8.78909 -7.97391 -6.64588 -4.12361 -0.54526 0.80841 0.92501 1.13342 2.84818 2.97753 3.04807 3.08228 3.38223 3.88577 4.05025 4.28450 4.43906 4.49369 4.67640 4.75198 4.92644 5.04069 5.32256 5.36805 5.51787 5.57079 5.58142 5.61499 5.69698 5.75021 5.84876 5.93379 6.02517 6.06557 6.18989 6.24089 6.42128 6.75849 7.18371 8.12227 8.25314 8.68576 9.04878 9.65455 10.40879 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.007008 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.276292 B = 3994.406253 C = 4766.401544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.005 4.005 3 C -0.126 4.126 4 C -0.051 4.051 5 C -0.015 4.015 6 N -0.018 5.018 7 O -0.176 6.176 8 O -0.155 6.155 9 C 0.012 3.988 10 C -0.133 4.133 11 C -0.093 4.093 12 C 0.493 3.507 13 O -0.545 6.545 14 N -0.429 5.429 15 C 0.055 3.945 16 C -0.366 4.366 17 H 0.104 0.896 18 C 0.070 3.930 19 N -0.826 5.826 20 Si 0.894 3.106 21 H -0.270 1.270 22 H -0.287 1.287 23 H -0.263 1.263 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.163 13.858 0.985 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.006 4.006 3 C -0.144 4.144 4 C -0.071 4.071 5 C -0.100 4.100 6 N 0.465 4.535 7 O -0.370 6.370 8 O -0.354 6.354 9 C 0.010 3.990 10 C -0.189 4.189 11 C -0.098 4.098 12 C 0.281 3.719 13 O -0.427 6.427 14 N -0.147 5.147 15 C -0.087 4.087 16 C -0.494 4.494 17 H 0.121 0.879 18 C -0.145 4.145 19 N -0.456 5.456 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.188 1.188 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.167 0.833 28 H 0.166 0.834 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.287 13.341 0.569 13.547 hybrid contribution 1.217 0.124 0.852 1.491 sum 3.504 13.465 1.421 13.986 Atomic orbital electron populations 1.21018 0.89203 1.04228 1.03964 1.20513 0.97604 0.91489 0.90981 1.20944 0.92106 0.98550 1.02827 1.20955 0.94645 0.96099 0.95367 1.19975 0.76106 0.96341 1.17580 1.50424 1.04642 1.00343 0.98095 1.96254 1.70613 1.30012 1.40099 1.96278 1.70018 1.30323 1.38813 1.19798 0.93035 0.94108 0.92067 1.21168 0.99705 0.93174 1.04851 1.20332 0.91638 0.96196 1.01605 1.17811 0.83694 0.84859 0.85544 1.90679 1.56790 1.64689 1.30502 1.42248 1.49421 1.20614 1.02451 1.22226 0.99278 0.97946 0.89295 1.19730 1.13484 0.87838 1.28388 0.87859 1.27118 0.95785 0.93828 0.97805 1.68644 1.39136 1.02804 1.35009 0.86793 0.82426 0.77640 0.80851 1.19675 1.21420 1.18756 0.89413 0.89719 0.90410 0.83274 0.83424 0.88155 0.90843 0.89231 0.92765 0.92103 0.93099 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.62 36.00 0.35 -1.23 16 2 C 0.00 -0.07 5.92 -104.20 -0.62 -0.68 16 3 C -0.13 -1.36 9.69 -39.64 -0.38 -1.74 16 4 C -0.05 -0.62 9.68 -39.48 -0.38 -1.00 16 5 C -0.02 -0.23 6.53 -80.01 -0.52 -0.75 16 6 N -0.02 -0.30 4.60 33.93 0.16 -0.15 16 7 O -0.18 -2.91 19.69 -31.57 -0.62 -3.54 16 8 O -0.16 -2.72 17.48 -31.57 -0.55 -3.27 16 9 C 0.01 0.21 5.48 -104.20 -0.57 -0.36 16 10 C -0.13 -2.35 8.27 36.01 0.30 -2.05 16 11 C -0.09 -1.65 3.99 -104.97 -0.42 -2.07 16 12 C 0.49 10.94 3.89 -12.39 -0.05 10.89 16 13 O -0.55 -14.35 17.02 5.39 0.09 -14.25 16 14 N -0.43 -9.78 2.62 -121.77 -0.32 -10.09 16 15 C 0.06 1.05 8.42 59.84 0.50 1.55 16 16 C -0.37 -9.75 9.56 -13.45 -0.13 -9.88 16 17 H 0.10 3.10 8.02 -52.48 -0.42 2.68 16 18 C 0.07 1.82 5.69 -15.16 -0.09 1.74 16 19 N -0.83 -22.40 13.88 56.00 0.78 -21.62 16 20 Si 0.89 19.39 24.70 -169.99 -4.20 15.20 16 21 H -0.27 -5.47 6.87 56.52 0.39 -5.08 16 22 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.26 -5.51 6.65 56.52 0.38 -5.13 16 24 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.08 1.27 7.08 -51.93 -0.37 0.90 16 26 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.15 1.41 8.02 -52.48 -0.42 0.99 16 29 H 0.10 1.71 8.09 -51.93 -0.42 1.29 16 30 H 0.07 1.22 6.93 -51.93 -0.36 0.86 16 31 H 0.09 1.78 6.89 -51.93 -0.36 1.42 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 1.20 2.70 -51.93 -0.14 1.06 16 34 H 0.05 0.88 6.76 -51.93 -0.35 0.53 16 35 H 0.28 7.02 8.26 -40.82 -0.34 6.68 16 LS Contribution 302.54 15.07 4.56 4.56 Total: -1.00 -30.65 302.54 -5.82 -36.47 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -3.70 Total: 2.29 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.01 Total: -5.58 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.61 Total: -31.87 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -1.08 Total: -21.06 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.20 Total: 15.20 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.65 -5.82 -36.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874256478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.409 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.12 seconds