Wall clock time and date at job start Tue Mar 31 2020 00:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37954 * 120.07643 * 2 1 4 4 C 1.38361 * 120.15086 * 180.02562 * 3 2 1 5 5 C 1.38400 * 120.31042 * 0.27703 * 4 3 2 6 6 N 1.48021 * 119.92092 * 179.70296 * 5 4 3 7 7 O 1.31698 * 120.00269 * 37.48520 * 6 5 4 8 8 O 1.31703 * 119.99495 * 217.48035 * 6 5 4 9 9 C 1.37904 * 120.15231 * 359.44356 * 5 4 3 10 10 C 1.50704 * 120.07699 * 180.27645 * 9 5 4 11 11 C 1.39649 * 120.07984 * 180.02562 * 2 1 3 12 12 C 1.47698 * 120.15342 * 0.02562 * 11 2 1 13 13 O 1.21472 * 119.99847 * 89.99273 * 12 11 2 14 14 N 1.34780 * 119.99659 * 270.00156 * 12 11 2 15 15 C 1.46495 * 120.00237 * 359.97438 * 14 12 11 16 16 C 1.33330 * 119.99574 * 180.02562 * 14 12 11 17 17 H 1.08003 * 120.00107 * 314.28998 * 16 14 12 18 18 C 1.46783 * 120.00036 * 134.29815 * 16 14 12 19 19 N 1.29323 * 119.99704 * 183.58489 * 18 16 14 20 20 Si 1.86801 * 120.00084 * 3.57775 * 18 16 14 21 21 H 1.48494 * 109.46953 * 85.30658 * 20 18 16 22 22 H 1.48503 * 109.47323 * 205.30857 * 20 18 16 23 23 H 1.48500 * 109.46710 * 325.30656 * 20 18 16 24 24 H 1.08997 * 109.47152 * 90.00265 * 1 2 3 25 25 H 1.09004 * 109.47175 * 210.00107 * 1 2 3 26 26 H 1.08996 * 109.47418 * 329.99758 * 1 2 3 27 27 H 1.07997 * 119.92727 * 0.04484 * 3 2 1 28 28 H 1.08006 * 119.84328 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47568 * 275.79631 * 10 9 5 30 30 H 1.09005 * 109.47342 * 35.80171 * 10 9 5 31 31 H 1.09007 * 109.47012 * 155.79699 * 10 9 5 32 32 H 1.08996 * 109.47157 * 84.85309 * 15 14 12 33 33 H 1.08999 * 109.47242 * 204.85457 * 15 14 12 34 34 H 1.08998 * 109.47271 * 324.85014 * 15 14 12 35 35 H 0.97008 * 119.99440 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1938 0.0000 4 6 3.5819 1.1956 -0.0005 5 6 4.2820 0.0017 -0.0069 6 7 5.7621 0.0137 -0.0140 7 8 6.4167 0.9223 0.6791 8 8 6.4244 -0.8844 -0.7135 9 6 3.6037 -1.1990 -0.0011 10 6 4.3677 -2.4980 -0.0017 11 6 2.2069 -1.2084 -0.0005 12 6 1.4736 -2.4905 -0.0017 13 8 1.1724 -3.0169 -1.0541 14 7 1.1386 -3.0762 1.1651 15 6 1.5022 -2.4415 2.4343 16 6 0.4771 -4.2338 1.1640 17 1 -0.3717 -4.3702 0.5103 18 6 0.9023 -5.3229 2.0514 19 7 0.3048 -6.4687 2.0010 20 14 2.3067 -5.0540 3.2534 21 1 1.7807 -4.4431 4.5005 22 1 2.9431 -6.3576 3.5710 23 1 3.3128 -4.1474 2.6442 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6584 2.1291 0.0007 28 1 4.1182 2.1331 -0.0010 29 1 4.6367 -2.7609 -1.0247 30 1 5.2731 -2.3874 0.5951 31 1 3.7459 -3.2855 0.4243 32 1 0.7438 -1.7063 2.7033 33 1 1.5660 -3.1998 3.2146 34 1 2.4675 -1.9461 2.3294 35 1 0.5861 -7.1886 2.5873 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874256478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:59 Heat of formation + Delta-G solvation = 16.897420 kcal Electronic energy + Delta-G solvation = -22175.628304 eV Core-core repulsion = 18757.483684 eV Total energy + Delta-G solvation = -3418.144620 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.07886 -40.47087 -39.17673 -36.85878 -35.79340 -34.93956 -34.53462 -33.54501 -29.79067 -29.19133 -28.38942 -26.99206 -26.13518 -24.23904 -22.19890 -21.29882 -19.58214 -19.33848 -19.12954 -18.04683 -17.83457 -17.35586 -16.77724 -16.44182 -15.98717 -15.65704 -15.15917 -14.83625 -14.75833 -14.38841 -14.26682 -14.13598 -13.97034 -13.77328 -13.29438 -13.13008 -13.07136 -12.85935 -12.75451 -12.61343 -12.36635 -12.18463 -11.87083 -11.73340 -11.16751 -10.79052 -10.33418 -10.21392 -9.83678 -8.64058 -6.19316 -1.79355 -0.33246 -0.20669 -0.07018 1.12147 1.20851 1.32988 1.68651 1.98471 2.04200 2.49659 2.76550 3.14225 3.25132 3.40293 3.61769 3.75529 3.78895 4.07351 4.12956 4.26205 4.28012 4.35660 4.41078 4.53037 4.60551 4.63596 4.67694 4.76788 4.83793 5.03667 5.14716 5.26720 5.37523 5.48153 6.03933 6.33028 6.77808 7.13293 7.79120 8.45725 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.007008 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.276292 B = 3994.406253 C = 4766.401544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.002 3.998 3 C -0.095 4.095 4 C -0.029 4.029 5 C -0.025 4.025 6 N -0.016 5.016 7 O -0.149 6.149 8 O -0.206 6.206 9 C -0.003 4.003 10 C -0.128 4.128 11 C -0.120 4.120 12 C 0.502 3.498 13 O -0.603 6.603 14 N -0.438 5.438 15 C 0.055 3.945 16 C -0.388 4.388 17 H 0.046 0.954 18 C 0.025 3.975 19 N -0.871 5.871 20 Si 0.957 3.043 21 H -0.236 1.236 22 H -0.287 1.287 23 H -0.255 1.255 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.126 0.874 27 H 0.208 0.792 28 H 0.186 0.814 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 18.611 2.808 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.001 3.999 3 C -0.113 4.113 4 C -0.048 4.048 5 C -0.111 4.111 6 N 0.465 4.535 7 O -0.353 6.353 8 O -0.392 6.392 9 C -0.005 4.005 10 C -0.184 4.184 11 C -0.125 4.125 12 C 0.291 3.709 13 O -0.488 6.488 14 N -0.156 5.156 15 C -0.087 4.087 16 C -0.516 4.516 17 H 0.064 0.936 18 C -0.187 4.187 19 N -0.503 5.503 20 Si 0.780 3.220 21 H -0.161 1.161 22 H -0.214 1.214 23 H -0.179 1.179 24 H 0.107 0.893 25 H 0.068 0.932 26 H 0.145 0.855 27 H 0.225 0.775 28 H 0.203 0.797 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.319 18.015 2.342 18.467 hybrid contribution 0.800 -1.183 0.229 1.446 sum 4.119 16.832 2.571 17.519 Atomic orbital electron populations 1.21105 0.88235 1.04878 1.04267 1.20788 0.98367 0.91118 0.89666 1.21496 0.91466 0.99089 0.99212 1.21541 0.95188 0.95971 0.92102 1.20135 0.75354 0.96879 1.18688 1.50596 1.05201 1.00025 0.97655 1.96224 1.71003 1.29333 1.38715 1.96306 1.70471 1.31613 1.40860 1.19598 0.92776 0.94398 0.93770 1.21036 0.99586 0.93391 1.04431 1.19846 0.91657 0.95081 1.05871 1.18402 0.82154 0.85962 0.84346 1.90627 1.58839 1.66828 1.32550 1.42309 1.49210 1.19809 1.04293 1.22338 1.01352 0.98236 0.86778 1.19310 1.13253 0.90489 1.28593 0.93603 1.27929 0.98346 0.92998 0.99427 1.68755 1.41105 1.03926 1.36502 0.85802 0.78845 0.77901 0.79408 1.16073 1.21439 1.17889 0.89288 0.93218 0.85524 0.77512 0.79656 0.88823 0.90137 0.92140 0.89634 0.92656 0.91067 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.62 71.23 0.69 -2.08 16 2 C 0.00 0.04 5.92 -19.59 -0.12 -0.08 16 3 C -0.09 -1.39 9.69 22.23 0.22 -1.18 16 4 C -0.03 -0.52 9.68 22.34 0.22 -0.30 16 5 C -0.03 -0.70 6.53 36.33 0.24 -0.46 16 6 N -0.02 -0.49 4.60 -46.56 -0.21 -0.70 16 7 O -0.15 -4.36 19.69 3.52 0.07 -4.29 16 8 O -0.21 -7.16 17.48 3.51 0.06 -7.10 16 9 C 0.00 -0.11 5.48 -19.59 -0.11 -0.21 16 10 C -0.13 -4.66 8.27 71.24 0.59 -4.07 16 11 C -0.12 -4.14 3.99 -20.09 -0.08 -4.22 16 12 C 0.50 23.14 3.89 86.74 0.34 23.48 16 13 O -0.60 -34.06 17.02 -3.63 -0.06 -34.13 16 14 N -0.44 -20.64 2.62 -657.46 -1.72 -22.36 16 15 C 0.05 1.98 8.42 127.77 1.08 3.06 16 16 C -0.39 -22.05 9.56 86.70 0.83 -21.22 16 17 H 0.05 3.05 8.02 -2.91 -0.02 3.03 16 18 C 0.02 1.33 5.69 87.30 0.50 1.83 16 19 N -0.87 -49.75 13.88 23.26 0.32 -49.43 16 20 Si 0.96 40.09 24.70 68.60 1.69 41.79 16 21 H -0.24 -8.61 6.87 99.48 0.68 -7.93 16 22 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.25 -10.24 6.65 99.48 0.66 -9.58 16 24 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.05 1.44 7.08 -2.39 -0.02 1.43 16 26 H 0.13 1.46 8.09 -2.39 -0.02 1.44 16 27 H 0.21 0.85 8.06 -2.91 -0.02 0.82 16 28 H 0.19 2.05 8.02 -2.91 -0.02 2.03 16 29 H 0.09 3.40 8.09 -2.39 -0.02 3.39 16 30 H 0.08 2.72 6.93 -2.38 -0.02 2.70 16 31 H 0.06 2.50 6.89 -2.38 -0.02 2.49 16 32 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.06 2.07 2.70 -2.39 -0.01 2.07 16 34 H 0.07 2.29 6.76 -2.39 -0.02 2.28 16 35 H 0.29 15.00 8.26 -92.70 -0.77 14.23 16 Total: -1.00 -75.68 302.54 5.59 -70.09 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.07 Total: 11.57 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 4.38 Total: -5.45 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -1.61 Total: -72.48 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: 0.07 Total: -45.51 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.69 Total: 41.79 kcal Total: -75.68 5.59 -70.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874256478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.983 kcal (2) G-P(sol) polarization free energy of solvation -75.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds