Wall clock time and date at job start Mon Mar 30 2020 23:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00391 * 2 1 4 4 H 1.48497 * 109.47165 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46749 * 300.00059 * 3 2 1 6 6 H 1.48493 * 109.47388 * 60.00021 * 3 2 1 7 7 C 1.37877 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99956 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00206 * 359.97438 * 7 2 1 10 10 S 1.81395 * 109.47439 * 180.02562 * 9 7 2 11 11 C 1.81403 * 103.00106 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47114 * 180.02562 * 11 10 9 13 13 H 1.09009 * 109.82144 * 305.88039 * 12 11 10 14 14 C 1.54382 * 109.82908 * 185.00113 * 12 11 10 15 15 C 1.55305 * 102.43395 * 218.93255 * 14 12 11 16 16 C 1.55503 * 100.69731 * 34.13038 * 15 14 12 17 17 H 1.09000 * 110.29205 * 82.50380 * 16 15 14 18 18 C 1.50696 * 110.36702 * 204.61043 * 16 15 14 19 19 C 1.38233 * 120.00051 * 81.98122 * 18 16 15 20 20 C 1.38237 * 119.99789 * 179.78931 * 19 18 16 21 21 C 1.38236 * 120.00131 * 0.43848 * 20 19 18 22 22 C 1.38237 * 119.99895 * 359.80619 * 21 20 19 23 23 C 1.38236 * 119.99765 * 262.24661 * 18 16 15 24 24 O 1.43232 * 109.90984 * 66.81762 * 12 11 10 25 25 H 0.97008 * 119.99401 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47071 * 59.99861 * 9 7 2 27 27 H 1.09011 * 109.47115 * 300.00120 * 9 7 2 28 28 H 1.08997 * 109.47377 * 60.00025 * 11 10 9 29 29 H 1.08997 * 109.46987 * 299.99663 * 11 10 9 30 30 H 1.09002 * 110.84829 * 337.22559 * 14 12 11 31 31 H 1.09001 * 110.84937 * 100.64659 * 14 12 11 32 32 H 1.08999 * 111.12419 * 152.14904 * 15 14 12 33 33 H 1.08995 * 111.13053 * 276.31315 * 15 14 12 34 34 H 1.07999 * 120.00357 * 359.97438 * 19 18 16 35 35 H 1.08003 * 120.00179 * 180.27148 * 20 19 18 36 36 H 1.07998 * 120.00058 * 179.83952 * 21 20 19 37 37 H 1.07998 * 120.00422 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.00190 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8906 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 16 2.4296 -3.8780 -0.0005 11 6 1.3512 -5.3367 -0.0013 12 6 2.2080 -6.6043 -0.0008 13 1 2.9136 -6.5739 -0.8312 14 6 1.3027 -7.8483 -0.1280 15 6 1.9889 -8.8606 0.8293 16 6 2.5159 -7.9014 1.9340 17 1 1.7227 -7.6725 2.6458 18 6 3.6938 -8.5167 2.6446 19 6 4.9567 -8.4340 2.0886 20 6 6.0379 -8.9946 2.7426 21 6 5.8547 -9.6458 3.9481 22 6 4.5910 -9.7329 4.5016 23 6 3.5105 -9.1685 3.8497 24 8 2.9195 -6.7116 1.2377 25 1 -0.4850 0.8402 0.0004 26 1 0.6239 -2.5566 -0.8902 27 1 0.6245 -2.5571 0.8898 28 1 0.7224 -5.3232 -0.8915 29 1 0.7218 -5.3236 0.8885 30 1 0.2888 -7.6259 0.2045 31 1 1.3001 -8.2231 -1.1516 32 1 1.2673 -9.5711 1.2325 33 1 2.8101 -9.3768 0.3323 34 1 5.0992 -7.9288 1.1447 35 1 7.0253 -8.9262 2.3103 36 1 6.6990 -10.0860 4.4577 37 1 4.4478 -10.2420 5.4433 38 1 2.5233 -9.2365 4.2822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882177654.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:49 Heat of formation + Delta-G solvation = -36.298414 kcal Electronic energy + Delta-G solvation = -18420.488107 eV Core-core repulsion = 15546.329957 eV Total energy + Delta-G solvation = -2874.158150 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10509 -38.53835 -33.09477 -32.80099 -32.27123 -30.96427 -29.90356 -28.46465 -25.90311 -23.17018 -22.66499 -22.54816 -21.30049 -20.52394 -17.35540 -16.69011 -16.44167 -15.91690 -15.30650 -15.17385 -14.58785 -14.47645 -14.06047 -13.68271 -13.47270 -13.26434 -12.93794 -12.70255 -12.51091 -12.37501 -12.03098 -11.83307 -11.64632 -11.32767 -11.14667 -11.03822 -10.88116 -10.82847 -10.54882 -9.83525 -9.61086 -9.40066 -9.00512 -8.78038 -8.70963 -8.57372 -6.53757 -6.14969 -4.18237 1.21338 1.32264 2.71788 3.28246 3.35132 3.42471 3.57120 3.95298 3.98256 4.37635 4.39966 4.55495 4.73266 4.80822 4.87502 5.02938 5.09262 5.12555 5.22294 5.22767 5.44881 5.46844 5.49504 5.58835 5.66573 5.67338 5.85734 5.88192 5.93698 6.03165 6.24217 6.35176 6.42895 6.53874 6.89617 7.15489 7.16123 7.18072 7.80601 8.07719 8.84187 9.44446 10.96641 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024958 B = 0.003361 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.616138 B = 8327.860811 C = 8984.016475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.508 4.508 8 H 0.068 0.932 9 C 0.087 3.913 10 S -0.291 6.291 11 C -0.102 4.102 12 C 0.102 3.898 13 H 0.087 0.913 14 C -0.149 4.149 15 C -0.143 4.143 16 C 0.115 3.885 17 H 0.078 0.922 18 C -0.082 4.082 19 C -0.092 4.092 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.112 4.112 24 O -0.349 6.349 25 H 0.264 0.736 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.027 -22.263 4.276 23.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.548 4.548 8 H 0.086 0.914 9 C -0.060 4.060 10 S -0.064 6.064 11 C -0.251 4.251 12 C 0.043 3.957 13 H 0.105 0.895 14 C -0.188 4.188 15 C -0.181 4.181 16 C 0.057 3.943 17 H 0.095 0.905 18 C -0.082 4.082 19 C -0.110 4.110 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.130 4.130 24 O -0.268 6.268 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.120 -21.951 4.344 23.199 hybrid contribution -1.243 0.828 -0.017 1.494 sum 4.877 -21.123 4.327 22.106 Atomic orbital electron populations 1.69971 1.06153 1.27105 1.50107 1.24974 0.94970 0.99294 0.94767 0.86302 0.80159 0.82580 0.77673 1.19381 1.20780 1.20754 1.20743 0.93526 0.88791 1.51692 0.91421 1.21039 0.93902 0.91297 0.99799 1.86740 1.20430 1.01350 1.97908 1.23641 1.00566 0.96697 1.04202 1.22440 0.93061 0.92537 0.87636 0.89507 1.23218 0.99982 0.94629 1.00942 1.23371 1.00717 0.97870 0.96098 1.21871 0.93448 0.85083 0.93874 0.90452 1.19812 0.94848 0.98359 0.95159 1.21059 0.91880 0.97726 1.00356 1.21189 0.98891 0.98341 0.95673 1.21154 0.97162 0.99706 0.96110 1.21068 0.92823 1.00408 0.99877 1.20934 0.99120 0.98479 0.94501 1.88655 1.63897 1.41470 1.32742 0.92651 0.94869 0.94828 0.90134 0.90702 0.90145 0.89739 0.89864 0.90187 0.85440 0.86066 0.86289 0.86137 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.82 9.13 -34.44 -0.31 -15.13 16 8 H 0.07 1.99 7.71 -52.49 -0.40 1.58 16 9 C 0.09 2.34 5.70 36.00 0.21 2.54 16 10 S -0.29 -6.68 21.50 -107.50 -2.31 -8.99 16 11 C -0.10 -1.78 5.50 37.16 0.20 -1.58 16 12 C 0.10 1.46 3.51 -26.01 -0.09 1.37 16 13 H 0.09 1.26 8.14 -51.92 -0.42 0.83 16 14 C -0.15 -1.54 6.53 -24.78 -0.16 -1.70 16 15 C -0.14 -1.37 6.60 -24.18 -0.16 -1.53 16 16 C 0.12 1.41 3.65 -26.55 -0.10 1.31 16 17 H 0.08 0.92 8.07 -51.93 -0.42 0.51 16 18 C -0.08 -0.98 5.05 -104.63 -0.53 -1.51 16 19 C -0.09 -1.12 9.37 -39.58 -0.37 -1.49 16 20 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 21 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 22 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.11 -1.18 9.70 -39.58 -0.38 -1.56 16 24 O -0.35 -5.52 9.69 -35.23 -0.34 -5.86 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.03 0.95 8.14 -51.92 -0.42 0.52 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 34 H 0.13 1.59 7.63 -52.49 -0.40 1.19 16 35 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 332.52 15.07 5.01 5.01 Total: -1.00 -31.81 332.52 -10.75 -42.56 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.84 Total: -1.30 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -2.99 Total: -22.42 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.74 Total: -25.86 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.34 Total: -5.86 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -6.68 SS G_CDS: -2.31 Total: -8.99 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.81 -10.75 -42.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882177654.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.262 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds