Wall clock time and date at job start Mon Mar 30 2020 23:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00391 * 2 1 4 4 H 1.48497 * 109.47165 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46749 * 300.00059 * 3 2 1 6 6 H 1.48493 * 109.47388 * 60.00021 * 3 2 1 7 7 C 1.37877 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99956 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00206 * 359.97438 * 7 2 1 10 10 S 1.81395 * 109.47439 * 180.02562 * 9 7 2 11 11 C 1.81403 * 103.00106 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47114 * 180.02562 * 11 10 9 13 13 H 1.09009 * 109.82144 * 305.88039 * 12 11 10 14 14 C 1.54382 * 109.82908 * 185.00113 * 12 11 10 15 15 C 1.55305 * 102.43395 * 218.93255 * 14 12 11 16 16 C 1.55503 * 100.69731 * 34.13038 * 15 14 12 17 17 H 1.09000 * 110.29205 * 82.50380 * 16 15 14 18 18 C 1.50696 * 110.36702 * 204.61043 * 16 15 14 19 19 C 1.38233 * 120.00051 * 81.98122 * 18 16 15 20 20 C 1.38237 * 119.99789 * 179.78931 * 19 18 16 21 21 C 1.38236 * 120.00131 * 0.43848 * 20 19 18 22 22 C 1.38237 * 119.99895 * 359.80619 * 21 20 19 23 23 C 1.38236 * 119.99765 * 262.24661 * 18 16 15 24 24 O 1.43232 * 109.90984 * 66.81762 * 12 11 10 25 25 H 0.97008 * 119.99401 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47071 * 59.99861 * 9 7 2 27 27 H 1.09011 * 109.47115 * 300.00120 * 9 7 2 28 28 H 1.08997 * 109.47377 * 60.00025 * 11 10 9 29 29 H 1.08997 * 109.46987 * 299.99663 * 11 10 9 30 30 H 1.09002 * 110.84829 * 337.22559 * 14 12 11 31 31 H 1.09001 * 110.84937 * 100.64659 * 14 12 11 32 32 H 1.08999 * 111.12419 * 152.14904 * 15 14 12 33 33 H 1.08995 * 111.13053 * 276.31315 * 15 14 12 34 34 H 1.07999 * 120.00357 * 359.97438 * 19 18 16 35 35 H 1.08003 * 120.00179 * 180.27148 * 20 19 18 36 36 H 1.07998 * 120.00058 * 179.83952 * 21 20 19 37 37 H 1.07998 * 120.00422 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.00190 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8906 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 16 2.4296 -3.8780 -0.0005 11 6 1.3512 -5.3367 -0.0013 12 6 2.2080 -6.6043 -0.0008 13 1 2.9136 -6.5739 -0.8312 14 6 1.3027 -7.8483 -0.1280 15 6 1.9889 -8.8606 0.8293 16 6 2.5159 -7.9014 1.9340 17 1 1.7227 -7.6725 2.6458 18 6 3.6938 -8.5167 2.6446 19 6 4.9567 -8.4340 2.0886 20 6 6.0379 -8.9946 2.7426 21 6 5.8547 -9.6458 3.9481 22 6 4.5910 -9.7329 4.5016 23 6 3.5105 -9.1685 3.8497 24 8 2.9195 -6.7116 1.2377 25 1 -0.4850 0.8402 0.0004 26 1 0.6239 -2.5566 -0.8902 27 1 0.6245 -2.5571 0.8898 28 1 0.7224 -5.3232 -0.8915 29 1 0.7218 -5.3236 0.8885 30 1 0.2888 -7.6259 0.2045 31 1 1.3001 -8.2231 -1.1516 32 1 1.2673 -9.5711 1.2325 33 1 2.8101 -9.3768 0.3323 34 1 5.0992 -7.9288 1.1447 35 1 7.0253 -8.9262 2.3103 36 1 6.6990 -10.0860 4.4577 37 1 4.4478 -10.2420 5.4433 38 1 2.5233 -9.2365 4.2822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882177654.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:48 Heat of formation + Delta-G solvation = -52.949116 kcal Electronic energy + Delta-G solvation = -18421.210136 eV Core-core repulsion = 15546.329957 eV Total energy + Delta-G solvation = -2874.880179 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.04331 -39.41643 -35.31149 -33.79109 -33.25969 -31.74422 -30.94401 -30.65414 -26.97713 -25.21134 -23.59231 -23.39390 -22.30536 -21.47232 -18.68507 -18.24751 -17.60035 -17.17192 -16.85673 -16.33580 -16.05709 -15.48837 -15.07784 -14.89121 -14.69305 -14.41678 -14.27526 -14.21641 -14.09314 -13.73510 -13.25382 -12.92624 -12.80688 -12.75933 -12.61892 -12.39791 -11.95203 -11.84074 -11.80158 -11.68507 -11.33162 -10.82351 -10.76913 -10.51187 -9.79849 -9.58514 -8.43222 -8.35326 -6.48473 0.41622 0.52505 1.02139 1.38342 1.38722 1.54255 2.06447 2.35606 2.69397 2.98878 3.04544 3.48107 3.65444 3.76101 4.01549 4.05274 4.11551 4.20921 4.24515 4.32265 4.43767 4.54418 4.55906 4.68689 4.77161 4.85985 4.91066 4.91631 4.92601 5.00597 5.10226 5.18146 5.24158 5.55482 5.58232 5.64301 5.69087 5.87619 6.11058 6.16388 6.58940 7.19502 8.77195 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024958 B = 0.003361 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.616138 B = 8327.860811 C = 8984.016475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.978 3.022 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.092 3.908 10 S -0.314 6.314 11 C -0.087 4.087 12 C 0.101 3.899 13 H 0.083 0.917 14 C -0.137 4.137 15 C -0.130 4.130 16 C 0.107 3.893 17 H 0.078 0.922 18 C -0.098 4.098 19 C -0.115 4.115 20 C -0.132 4.132 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.121 4.121 24 O -0.380 6.380 25 H 0.271 0.729 26 H 0.015 0.985 27 H 0.009 0.991 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 -23.716 4.847 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.078 0.922 9 C -0.055 4.055 10 S -0.087 6.087 11 C -0.236 4.236 12 C 0.043 3.957 13 H 0.101 0.899 14 C -0.177 4.177 15 C -0.167 4.167 16 C 0.049 3.951 17 H 0.096 0.904 18 C -0.099 4.099 19 C -0.133 4.133 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.143 4.143 23 C -0.139 4.139 24 O -0.300 6.300 25 H 0.080 0.920 26 H 0.033 0.967 27 H 0.028 0.972 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.131 0.869 35 H 0.153 0.847 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.441 -23.414 4.915 24.776 hybrid contribution -1.343 1.162 -0.142 1.781 sum 5.098 -22.253 4.773 23.323 Atomic orbital electron populations 1.70067 1.07679 1.28533 1.50183 1.25943 0.95938 1.03119 0.93721 0.85199 0.78666 0.77641 0.78357 1.19080 1.19472 1.19643 1.21033 0.93357 0.90353 1.52791 0.92249 1.20713 0.94131 0.93056 0.97611 1.86647 1.21351 1.02789 1.97936 1.23816 1.00101 0.94837 1.04816 1.22471 0.93343 0.92587 0.87346 0.89933 1.23196 0.99348 0.92474 1.02638 1.23341 1.01144 0.97459 0.94805 1.22075 0.93770 0.84694 0.94519 0.90445 1.19921 0.94666 0.99206 0.96058 1.21087 0.92849 0.98942 1.00460 1.21428 0.99114 0.98251 0.96222 1.21507 0.98220 0.99040 0.95653 1.21447 0.92465 0.99743 1.00634 1.21199 1.00434 0.98240 0.93978 1.88625 1.64505 1.43496 1.33374 0.92023 0.96687 0.97245 0.88640 0.90865 0.89289 0.87473 0.87322 0.89927 0.86932 0.84720 0.83772 0.83510 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 2 C 0.01 0.78 5.46 84.66 0.46 1.24 16 3 Si 0.98 45.06 29.54 68.60 2.03 47.09 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.54 -32.20 9.13 25.60 0.23 -31.96 16 8 H 0.06 3.58 7.71 -2.91 -0.02 3.56 16 9 C 0.09 5.19 5.70 71.23 0.41 5.60 16 10 S -0.31 -14.84 21.50 -56.49 -1.21 -16.05 16 11 C -0.09 -3.03 5.50 71.98 0.40 -2.64 16 12 C 0.10 2.85 3.51 31.06 0.11 2.95 16 13 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 14 C -0.14 -2.53 6.53 31.86 0.21 -2.33 16 15 C -0.13 -2.21 6.60 32.25 0.21 -2.00 16 16 C 0.11 2.53 3.65 30.71 0.11 2.65 16 17 H 0.08 1.79 8.07 -2.39 -0.02 1.77 16 18 C -0.10 -2.31 5.05 -19.87 -0.10 -2.41 16 19 C -0.12 -2.82 9.37 22.27 0.21 -2.61 16 20 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 21 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 22 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 23 C -0.12 -2.33 9.70 22.27 0.22 -2.12 16 24 O -0.38 -12.12 9.69 -148.98 -1.44 -13.56 16 25 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 26 H 0.01 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.09 1.52 7.85 -2.39 -0.02 1.51 16 31 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.38 8.06 -2.39 -0.02 1.36 16 34 H 0.11 2.97 7.63 -2.91 -0.02 2.94 16 35 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -70.44 332.52 3.81 -66.63 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.02 Total: 11.36 kcal Atomic # 6 Polarization: -43.05 SS G_CDS: 3.13 Total: -39.91 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.28 Total: -55.55 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -1.44 Total: -13.56 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: -14.84 SS G_CDS: -1.21 Total: -16.05 kcal Total: -70.44 3.81 -66.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882177654.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.685 kcal (2) G-P(sol) polarization free energy of solvation -70.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds