Wall clock time and date at job start Mon Mar 30 2020 23:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.47319 * 180.02562 * 9 7 2 11 11 C 1.81397 * 102.99868 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46969 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.87494 * 58.99023 * 12 11 10 14 14 C 1.54106 * 109.88129 * 179.97438 * 12 11 10 15 15 C 1.54808 * 104.18767 * 121.45127 * 14 12 11 16 16 C 1.54990 * 102.09339 * 20.88256 * 15 14 12 17 17 H 1.09002 * 110.62061 * 81.63726 * 16 15 14 18 18 C 1.50707 * 110.61817 * 204.47099 * 16 15 14 19 19 C 1.38238 * 119.99598 * 84.73138 * 18 16 15 20 20 C 1.38231 * 119.99492 * 179.81110 * 19 18 16 21 21 C 1.38233 * 120.00238 * 0.39489 * 20 19 18 22 22 C 1.38234 * 120.00051 * 359.85440 * 21 20 19 23 23 C 1.38230 * 120.00067 * 359.96114 * 22 21 20 24 24 O 1.43745 * 109.87858 * 297.82909 * 12 11 10 25 25 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 27 27 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 28 28 H 1.09001 * 109.47276 * 299.99683 * 11 10 9 29 29 H 1.09001 * 109.47181 * 60.00072 * 11 10 9 30 30 H 1.08998 * 110.48587 * 240.13321 * 14 12 11 31 31 H 1.09002 * 110.48419 * 2.64284 * 14 12 11 32 32 H 1.09002 * 110.90689 * 139.08699 * 15 14 12 33 33 H 1.08998 * 110.90959 * 262.68317 * 15 14 12 34 34 H 1.08001 * 120.00090 * 359.97438 * 19 18 16 35 35 H 1.08004 * 119.99651 * 180.22741 * 20 19 18 36 36 H 1.08001 * 119.99644 * 179.83841 * 21 20 19 37 37 H 1.08001 * 119.99863 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.00694 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0021 11 6 1.3516 -5.3366 0.0011 12 6 2.2085 -6.6041 0.0016 13 1 2.8529 -6.6155 0.8806 14 6 1.3014 -7.8499 0.0014 15 6 1.7116 -8.6178 -1.2787 16 6 3.1246 -8.0470 -1.5610 17 1 3.8710 -8.5470 -0.9437 18 6 3.4696 -8.1825 -3.0217 19 6 3.0547 -7.2191 -3.9221 20 6 3.3744 -7.3413 -5.2613 21 6 4.1022 -8.4311 -5.7015 22 6 4.5127 -9.3971 -4.8020 23 6 4.1962 -9.2729 -3.4621 24 8 3.0060 -6.6555 -1.1933 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6247 -2.5571 -0.8897 28 1 0.7215 -5.3233 0.8904 29 1 0.7235 -5.3235 -0.8896 30 1 1.4876 -8.4575 0.8870 31 1 0.2523 -7.5579 -0.0461 32 1 1.7557 -9.6907 -1.0914 33 1 1.0310 -8.3956 -2.1005 34 1 2.4829 -6.3696 -3.5787 35 1 3.0534 -6.5868 -5.9642 36 1 4.3497 -8.5278 -6.7483 37 1 5.0809 -10.2487 -5.1460 38 1 4.5166 -10.0278 -2.7593 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882177655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:52 Heat of formation + Delta-G solvation = -39.062818 kcal Electronic energy + Delta-G solvation = -18549.985495 eV Core-core repulsion = 15675.707471 eV Total energy + Delta-G solvation = -2874.278024 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.11436 -38.56245 -33.45363 -32.85861 -32.31411 -30.94771 -29.97476 -27.99843 -25.81717 -23.24248 -22.76216 -22.60384 -20.97473 -20.82761 -17.26037 -16.95283 -16.63719 -15.87570 -15.62840 -15.07002 -14.46125 -14.28195 -13.84158 -13.82508 -13.57892 -13.43718 -13.13044 -12.93788 -12.71634 -12.18945 -12.09324 -11.97133 -11.65008 -11.35195 -11.10741 -10.97171 -10.81801 -10.72220 -10.30467 -10.04373 -9.75414 -9.02474 -8.99581 -8.78757 -8.73448 -8.50937 -6.66206 -6.49963 -4.20878 1.21164 1.33375 2.58360 3.42913 3.44999 3.57755 3.63234 3.81380 3.89222 4.39108 4.48453 4.56947 4.77296 4.79724 4.85949 4.93359 5.06647 5.08733 5.19561 5.28113 5.37763 5.45386 5.46138 5.55059 5.60137 5.75639 5.83322 5.86442 5.89983 6.01355 6.11959 6.34565 6.46114 6.51220 6.79910 6.85559 6.90510 7.00533 7.86323 8.31182 8.68987 9.48583 10.90216 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021813 B = 0.003674 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.319929 B = 7620.044800 C = 8486.162404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 1.077 2.923 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.589 4.589 8 H 0.061 0.939 9 C 0.068 3.932 10 S -0.268 6.268 11 C -0.097 4.097 12 C 0.098 3.902 13 H 0.076 0.924 14 C -0.149 4.149 15 C -0.142 4.142 16 C 0.112 3.888 17 H 0.077 0.923 18 C -0.080 4.080 19 C -0.090 4.090 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.113 4.113 24 O -0.344 6.344 25 H 0.267 0.733 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.447 -21.500 -5.895 22.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.182 4.182 3 Si 0.903 3.097 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.628 4.628 8 H 0.079 0.921 9 C -0.079 4.079 10 S -0.040 6.040 11 C -0.245 4.245 12 C 0.040 3.960 13 H 0.094 0.906 14 C -0.188 4.188 15 C -0.180 4.180 16 C 0.054 3.946 17 H 0.095 0.905 18 C -0.080 4.080 19 C -0.108 4.108 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.132 4.132 24 O -0.263 6.263 25 H 0.078 0.922 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.433 -19.630 -5.996 21.232 hybrid contribution -1.302 -1.912 0.115 2.316 sum 4.131 -21.542 -5.881 22.709 Atomic orbital electron populations 1.70808 1.06846 1.30485 1.46124 1.25965 0.96379 1.02563 0.93252 0.83433 0.74802 0.74544 0.76879 1.20590 1.21121 1.21106 1.21558 0.94780 0.89809 1.56640 0.92077 1.21107 0.94847 0.93444 0.98505 1.86817 1.19179 1.00214 1.97834 1.23477 1.00387 0.96327 1.04303 1.22403 0.91559 0.93074 0.89007 0.90605 1.23040 1.01131 0.96270 0.98377 1.23134 0.96485 1.00248 0.98101 1.21900 0.96460 0.84158 0.92076 0.90497 1.19624 0.98742 0.95579 0.94096 1.21148 0.98578 0.98457 0.92580 1.21231 0.98744 0.98037 0.95943 1.21170 0.98573 0.94708 0.99555 1.21045 1.00679 0.99329 0.93255 1.20886 0.98558 0.97670 0.96041 1.89122 1.71585 1.22634 1.42962 0.92249 0.95852 0.95761 0.89951 0.90516 0.90350 0.90072 0.90177 0.90282 0.85051 0.85918 0.86240 0.86144 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.67 13.65 55.43 0.76 -26.92 16 2 C 0.02 0.69 5.46 -17.82 -0.10 0.60 16 3 Si 1.08 25.53 29.90 -169.99 -5.08 20.44 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.59 -17.33 9.13 -34.44 -0.31 -17.65 16 8 H 0.06 1.82 7.71 -52.48 -0.40 1.42 16 9 C 0.07 1.83 5.01 36.01 0.18 2.01 16 10 S -0.27 -6.13 21.38 -107.50 -2.30 -8.43 16 11 C -0.10 -1.66 5.44 37.16 0.20 -1.46 16 12 C 0.10 1.41 3.45 -26.15 -0.09 1.32 16 13 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 14 C -0.15 -1.57 6.64 -25.20 -0.17 -1.73 16 15 C -0.14 -1.42 6.57 -24.73 -0.16 -1.59 16 16 C 0.11 1.35 3.55 -26.83 -0.10 1.26 16 17 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 18 C -0.08 -0.98 5.09 -104.62 -0.53 -1.52 16 19 C -0.09 -1.19 9.38 -39.58 -0.37 -1.56 16 20 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 21 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 22 C -0.13 -1.20 10.05 -39.59 -0.40 -1.60 16 23 C -0.11 -1.17 9.71 -39.58 -0.38 -1.56 16 24 O -0.34 -5.46 9.62 -35.23 -0.34 -5.80 16 25 H 0.27 8.08 7.22 -40.82 -0.29 7.79 16 26 H 0.02 0.63 8.01 -51.92 -0.42 0.22 16 27 H 0.02 0.67 8.01 -51.92 -0.42 0.25 16 28 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 29 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.82 7.70 -51.93 -0.40 0.42 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 34 H 0.13 1.93 7.52 -52.49 -0.39 1.53 16 35 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -32.49 330.70 -10.77 -43.26 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.76 Total: -0.63 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -3.03 Total: -26.90 kcal Atomic # 7 Polarization: -27.67 SS G_CDS: 0.76 Total: -26.92 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.34 Total: -5.80 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.44 kcal Atomic # 16 Polarization: -6.13 SS G_CDS: -2.30 Total: -8.43 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.49 -10.77 -43.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882177655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.193 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds