Wall clock time and date at job start Mon Mar 30 2020 23:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.47319 * 180.02562 * 9 7 2 11 11 C 1.81397 * 102.99868 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46969 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.87494 * 58.99023 * 12 11 10 14 14 C 1.54106 * 109.88129 * 179.97438 * 12 11 10 15 15 C 1.54808 * 104.18767 * 121.45127 * 14 12 11 16 16 C 1.54990 * 102.09339 * 20.88256 * 15 14 12 17 17 H 1.09002 * 110.62061 * 81.63726 * 16 15 14 18 18 C 1.50707 * 110.61817 * 204.47099 * 16 15 14 19 19 C 1.38238 * 119.99598 * 84.73138 * 18 16 15 20 20 C 1.38231 * 119.99492 * 179.81110 * 19 18 16 21 21 C 1.38233 * 120.00238 * 0.39489 * 20 19 18 22 22 C 1.38234 * 120.00051 * 359.85440 * 21 20 19 23 23 C 1.38230 * 120.00067 * 359.96114 * 22 21 20 24 24 O 1.43745 * 109.87858 * 297.82909 * 12 11 10 25 25 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 27 27 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 28 28 H 1.09001 * 109.47276 * 299.99683 * 11 10 9 29 29 H 1.09001 * 109.47181 * 60.00072 * 11 10 9 30 30 H 1.08998 * 110.48587 * 240.13321 * 14 12 11 31 31 H 1.09002 * 110.48419 * 2.64284 * 14 12 11 32 32 H 1.09002 * 110.90689 * 139.08699 * 15 14 12 33 33 H 1.08998 * 110.90959 * 262.68317 * 15 14 12 34 34 H 1.08001 * 120.00090 * 359.97438 * 19 18 16 35 35 H 1.08004 * 119.99651 * 180.22741 * 20 19 18 36 36 H 1.08001 * 119.99644 * 179.83841 * 21 20 19 37 37 H 1.08001 * 119.99863 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.00694 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0021 11 6 1.3516 -5.3366 0.0011 12 6 2.2085 -6.6041 0.0016 13 1 2.8529 -6.6155 0.8806 14 6 1.3014 -7.8499 0.0014 15 6 1.7116 -8.6178 -1.2787 16 6 3.1246 -8.0470 -1.5610 17 1 3.8710 -8.5470 -0.9437 18 6 3.4696 -8.1825 -3.0217 19 6 3.0547 -7.2191 -3.9221 20 6 3.3744 -7.3413 -5.2613 21 6 4.1022 -8.4311 -5.7015 22 6 4.5127 -9.3971 -4.8020 23 6 4.1962 -9.2729 -3.4621 24 8 3.0060 -6.6555 -1.1933 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6247 -2.5571 -0.8897 28 1 0.7215 -5.3233 0.8904 29 1 0.7235 -5.3235 -0.8896 30 1 1.4876 -8.4575 0.8870 31 1 0.2523 -7.5579 -0.0461 32 1 1.7557 -9.6907 -1.0914 33 1 1.0310 -8.3956 -2.1005 34 1 2.4829 -6.3696 -3.5787 35 1 3.0534 -6.5868 -5.9642 36 1 4.3497 -8.5278 -6.7483 37 1 5.0809 -10.2487 -5.1460 38 1 4.5166 -10.0278 -2.7593 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882177655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:51 Heat of formation + Delta-G solvation = -56.451996 kcal Electronic energy + Delta-G solvation = -18550.739546 eV Core-core repulsion = 15675.707471 eV Total energy + Delta-G solvation = -2875.032075 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06133 -39.46355 -35.71573 -33.87160 -33.30213 -31.77029 -31.01089 -30.21192 -26.89306 -25.24999 -23.88210 -23.44156 -22.00686 -21.73029 -19.23301 -18.00058 -17.72187 -17.01298 -16.82339 -16.39879 -15.85358 -15.64630 -15.29682 -15.24251 -14.85608 -14.65845 -14.25410 -14.16564 -13.92525 -13.70377 -13.55470 -13.16040 -12.82343 -12.61602 -12.56635 -12.01839 -11.94267 -11.82836 -11.77398 -11.64138 -11.12321 -10.87031 -10.72950 -10.65748 -9.83383 -9.62553 -8.85363 -8.55389 -6.58230 0.38223 0.49028 0.87385 1.50581 1.58841 1.79528 1.91220 2.49403 2.66847 2.97286 3.00907 3.45890 3.62179 3.83242 3.90821 3.99346 4.04213 4.15246 4.20391 4.29453 4.37575 4.46171 4.55041 4.57502 4.62541 4.64560 4.68672 4.84145 4.87557 5.02126 5.07410 5.13000 5.16582 5.54400 5.60757 5.61514 5.62287 5.94647 6.01192 6.10626 6.32749 7.20582 8.55461 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021813 B = 0.003674 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.319929 B = 7620.044800 C = 8486.162404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.023 4.023 3 Si 1.124 2.876 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.611 4.611 8 H 0.052 0.948 9 C 0.070 3.930 10 S -0.293 6.293 11 C -0.081 4.081 12 C 0.097 3.903 13 H 0.077 0.923 14 C -0.138 4.138 15 C -0.133 4.133 16 C 0.106 3.894 17 H 0.094 0.906 18 C -0.095 4.095 19 C -0.119 4.119 20 C -0.136 4.136 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.115 4.115 24 O -0.380 6.380 25 H 0.256 0.744 26 H 0.011 0.989 27 H 0.005 0.995 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.583 -23.837 -5.950 25.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.943 3.057 4 H -0.200 1.200 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.649 4.649 8 H 0.071 0.929 9 C -0.078 4.078 10 S -0.065 6.065 11 C -0.229 4.229 12 C 0.038 3.962 13 H 0.095 0.905 14 C -0.177 4.177 15 C -0.171 4.171 16 C 0.049 3.951 17 H 0.112 0.888 18 C -0.095 4.095 19 C -0.137 4.137 20 C -0.154 4.154 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.132 4.132 24 O -0.300 6.300 25 H 0.065 0.935 26 H 0.029 0.971 27 H 0.023 0.977 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.145 0.855 36 H 0.162 0.838 37 H 0.170 0.830 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.567 -21.992 -6.051 23.736 hybrid contribution -1.644 -1.337 0.080 2.121 sum 4.923 -23.329 -5.971 24.579 Atomic orbital electron populations 1.70930 1.07717 1.29882 1.47607 1.27573 0.96472 1.06421 0.91817 0.82863 0.74131 0.70447 0.78241 1.19992 1.19140 1.19452 1.21887 0.94623 0.91441 1.56943 0.92936 1.20841 0.95141 0.94922 0.96858 1.86706 1.20216 1.01742 1.97867 1.23646 0.99935 0.94454 1.04874 1.22471 0.91954 0.92941 0.88803 0.90484 1.23022 1.00324 0.94478 0.99923 1.23113 0.94782 1.01851 0.97323 1.22161 0.98164 0.82535 0.92276 0.88850 1.19790 0.99480 0.96161 0.94066 1.21065 1.00131 0.98610 0.93924 1.21396 0.99436 0.99155 0.95424 1.21500 0.97664 0.93996 1.01095 1.21477 0.99863 0.99817 0.92868 1.21212 0.97584 0.97380 0.97064 1.89095 1.71955 1.25476 1.43432 0.93457 0.97064 0.97652 0.88334 0.90893 0.87416 0.89651 0.87042 0.91412 0.88030 0.85492 0.83769 0.83007 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.65 21.45 0.29 -57.38 16 2 C -0.02 -1.38 5.46 84.65 0.46 -0.92 16 3 Si 1.12 51.28 29.90 68.60 2.05 53.33 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.61 -36.98 9.13 25.60 0.23 -36.75 16 8 H 0.05 3.21 7.71 -2.91 -0.02 3.19 16 9 C 0.07 3.91 5.01 71.24 0.36 4.27 16 10 S -0.29 -13.81 21.38 -56.49 -1.21 -15.02 16 11 C -0.08 -2.80 5.44 71.98 0.39 -2.41 16 12 C 0.10 2.70 3.45 30.97 0.11 2.81 16 13 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 14 C -0.14 -2.55 6.64 31.59 0.21 -2.34 16 15 C -0.13 -2.36 6.57 31.89 0.21 -2.15 16 16 C 0.11 2.41 3.55 30.53 0.11 2.52 16 17 H 0.09 1.79 8.10 -2.39 -0.02 1.77 16 18 C -0.09 -2.25 5.09 -19.86 -0.10 -2.36 16 19 C -0.12 -3.28 9.38 22.27 0.21 -3.08 16 20 C -0.14 -3.17 10.05 22.27 0.22 -2.95 16 21 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 22 C -0.12 -2.00 10.05 22.27 0.22 -1.77 16 23 C -0.11 -2.08 9.71 22.27 0.22 -1.86 16 24 O -0.38 -12.10 9.62 -148.98 -1.43 -13.54 16 25 H 0.26 16.08 7.22 -92.71 -0.67 15.41 16 26 H 0.01 0.64 8.01 -2.39 -0.02 0.62 16 27 H 0.01 0.31 8.01 -2.39 -0.02 0.29 16 28 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.53 7.70 -2.39 -0.02 1.51 16 32 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 34 H 0.10 3.30 7.52 -2.91 -0.02 3.27 16 35 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -72.98 330.70 3.90 -69.08 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.12 Total: 12.56 kcal Atomic # 6 Polarization: -52.12 SS G_CDS: 3.07 Total: -49.04 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.29 Total: -57.38 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.43 Total: -13.54 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 2.05 Total: 53.33 kcal Atomic # 16 Polarization: -13.81 SS G_CDS: -1.21 Total: -15.02 kcal Total: -72.98 3.90 -69.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882177655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.630 kcal (2) G-P(sol) polarization free energy of solvation -72.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds