Wall clock time and date at job start Mon Mar 30 2020 23:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00376 * 2 1 4 4 H 1.48495 * 109.47471 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47064 * 299.99866 * 3 2 1 6 6 H 1.48509 * 109.47359 * 59.99691 * 3 2 1 7 7 C 1.37875 * 119.99487 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99781 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00390 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.81399 * 102.99888 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47341 * 180.02562 * 11 10 9 13 13 H 1.09006 * 110.41382 * 307.31204 * 12 11 10 14 14 C 1.54477 * 110.37491 * 185.00128 * 12 11 10 15 15 C 1.54510 * 104.18108 * 217.25643 * 14 12 11 16 16 C 1.54478 * 104.06500 * 359.93120 * 15 14 12 17 17 H 1.09003 * 110.36949 * 265.14479 * 16 15 14 18 18 C 1.50702 * 110.37211 * 142.92279 * 16 15 14 19 19 C 1.38230 * 119.99831 * 279.72524 * 18 16 15 20 20 C 1.38237 * 120.00117 * 179.76691 * 19 18 16 21 21 C 1.38236 * 119.99744 * 0.48326 * 20 19 18 22 22 C 1.38236 * 119.99830 * 359.79220 * 21 20 19 23 23 C 1.38234 * 119.99878 * 99.99958 * 18 16 15 24 24 O 1.44415 * 104.80258 * 23.97587 * 16 15 14 25 25 H 0.97001 * 119.99322 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46685 * 59.99799 * 9 7 2 27 27 H 1.08994 * 109.47100 * 300.00191 * 9 7 2 28 28 H 1.08995 * 109.47251 * 60.00294 * 11 10 9 29 29 H 1.08998 * 109.47037 * 299.99913 * 11 10 9 30 30 H 1.09002 * 110.51371 * 98.54158 * 14 12 11 31 31 H 1.08994 * 110.51108 * 335.96806 * 14 12 11 32 32 H 1.09000 * 110.51039 * 118.57850 * 15 14 12 33 33 H 1.09007 * 110.50911 * 241.14516 * 15 14 12 34 34 H 1.08004 * 120.00171 * 359.97438 * 19 18 16 35 35 H 1.07998 * 120.00195 * 180.25285 * 20 19 18 36 36 H 1.07997 * 119.99926 * 179.76559 * 21 20 19 37 37 H 1.07999 * 119.99794 * 179.97438 * 22 21 20 38 38 H 1.07999 * 120.00428 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 6 1.3513 -5.3367 -0.0003 12 6 2.2081 -6.6043 0.0003 13 1 2.9346 -6.5726 -0.8117 14 6 1.3141 -7.8577 -0.1266 15 6 1.9974 -8.9037 0.7825 16 6 3.2263 -8.1606 1.3518 17 1 4.1092 -8.3692 0.7476 18 6 3.4653 -8.5628 2.7844 19 6 2.7159 -7.9927 3.7964 20 6 2.9318 -8.3651 5.1101 21 6 3.9040 -9.3002 5.4125 22 6 4.6572 -9.8660 4.4009 23 6 4.4378 -9.4975 3.0868 24 8 2.8810 -6.7607 1.2711 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 0.7225 -5.3232 -0.8904 29 1 0.7219 -5.3236 0.8895 30 1 1.2898 -8.2067 -1.1590 31 1 0.3055 -7.6448 0.2274 32 1 1.3273 -9.2061 1.5873 33 1 2.3087 -9.7708 0.2000 34 1 1.9595 -7.2589 3.5606 35 1 2.3436 -7.9228 5.9004 36 1 4.0752 -9.5884 6.4392 37 1 5.4170 -10.5963 4.6373 38 1 5.0260 -9.9399 2.2965 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882177656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:54 Heat of formation + Delta-G solvation = -36.059710 kcal Electronic energy + Delta-G solvation = -18419.524789 eV Core-core repulsion = 15545.376990 eV Total energy + Delta-G solvation = -2874.147799 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.07902 -38.51196 -33.10243 -32.82269 -32.21761 -30.97072 -29.96265 -28.47398 -25.82919 -23.24840 -22.72042 -22.52707 -21.10511 -20.65491 -17.19096 -16.61686 -16.39260 -15.86353 -15.66020 -15.18622 -14.52718 -14.32673 -14.28032 -13.77415 -13.45016 -13.15632 -12.88821 -12.72951 -12.64577 -12.36359 -11.96571 -11.86084 -11.59211 -11.34565 -11.10422 -10.99373 -10.85698 -10.70290 -10.55273 -9.91079 -9.68608 -9.45664 -9.00450 -8.80701 -8.75678 -8.58040 -6.57042 -6.15714 -4.19100 1.20864 1.32371 2.68176 3.27805 3.34766 3.41966 3.58256 3.93151 3.95994 4.39193 4.44315 4.60739 4.78511 4.83519 4.88601 4.97153 5.07397 5.14883 5.21560 5.23608 5.43048 5.46378 5.50744 5.54991 5.67295 5.82361 5.86224 5.87051 5.94526 5.99841 6.18361 6.34392 6.43639 6.51136 6.89150 6.97902 7.14232 7.16652 7.79783 8.06510 8.83251 9.43651 10.95867 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024061 B = 0.003397 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.446695 B = 8241.087154 C = 8903.398804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.509 4.509 8 H 0.068 0.932 9 C 0.088 3.912 10 S -0.294 6.294 11 C -0.086 4.086 12 C 0.097 3.903 13 H 0.077 0.923 14 C -0.148 4.148 15 C -0.143 4.143 16 C 0.111 3.889 17 H 0.075 0.925 18 C -0.079 4.079 19 C -0.090 4.090 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.112 4.112 24 O -0.345 6.345 25 H 0.264 0.736 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.163 -21.920 4.900 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.548 4.548 8 H 0.086 0.914 9 C -0.059 4.059 10 S -0.067 6.067 11 C -0.235 4.235 12 C 0.038 3.962 13 H 0.095 0.905 14 C -0.187 4.187 15 C -0.181 4.181 16 C 0.053 3.947 17 H 0.093 0.907 18 C -0.079 4.079 19 C -0.108 4.108 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.130 4.130 24 O -0.264 6.264 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.148 -21.591 5.057 22.766 hybrid contribution -1.062 0.757 -0.121 1.310 sum 4.086 -20.835 4.935 21.798 Atomic orbital electron populations 1.69973 1.06140 1.27127 1.50056 1.24973 0.94975 0.99289 0.94750 0.86301 0.80144 0.82570 0.77683 1.19394 1.20771 1.20750 1.20739 0.93524 0.88777 1.51763 0.91423 1.21045 0.93830 0.91171 0.99888 1.86763 1.20527 1.01470 1.97947 1.23254 1.00132 0.95489 1.04602 1.22713 0.93170 0.93128 0.87162 0.90505 1.23025 1.00392 0.94798 1.00523 1.22962 0.97093 0.98473 0.99539 1.21744 0.97184 0.83050 0.92721 0.90674 1.19652 0.96668 0.97278 0.94314 1.21092 0.99212 0.98403 0.92138 1.21208 0.98425 0.97813 0.96602 1.21164 0.96324 0.97385 0.99145 1.21060 0.99943 1.00492 0.92757 1.20929 0.97418 0.97933 0.96747 1.89363 1.77021 1.22942 1.37076 0.92634 0.94802 0.94718 0.89691 0.90224 0.90274 0.90314 0.90504 0.90475 0.85304 0.85981 0.86249 0.86125 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.76 9.13 -34.44 -0.31 -15.07 16 8 H 0.07 1.97 7.71 -52.49 -0.40 1.57 16 9 C 0.09 2.35 5.70 36.01 0.21 2.55 16 10 S -0.29 -6.69 21.58 -107.50 -2.32 -9.01 16 11 C -0.09 -1.50 5.56 37.16 0.21 -1.29 16 12 C 0.10 1.40 3.25 -25.95 -0.08 1.32 16 13 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 14 C -0.15 -1.60 6.62 -25.16 -0.17 -1.76 16 15 C -0.14 -1.42 6.62 -25.16 -0.17 -1.59 16 16 C 0.11 1.35 3.49 -27.11 -0.09 1.26 16 17 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 18 C -0.08 -0.96 4.93 -104.63 -0.52 -1.47 16 19 C -0.09 -1.14 9.37 -39.58 -0.37 -1.51 16 20 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 21 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 22 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.11 -1.16 9.69 -39.58 -0.38 -1.54 16 24 O -0.34 -5.49 10.19 -35.23 -0.36 -5.85 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.03 0.93 8.14 -51.92 -0.42 0.51 16 27 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 32 H 0.08 0.76 7.86 -51.93 -0.41 0.36 16 33 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.13 1.73 7.67 -52.48 -0.40 1.32 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 332.59 15.07 5.01 5.01 Total: -1.00 -31.51 332.59 -10.76 -42.27 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.83 Total: -1.15 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -2.98 Total: -22.30 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.36 Total: -5.85 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -6.69 SS G_CDS: -2.32 Total: -9.01 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.51 -10.76 -42.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882177656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.206 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds