Wall clock time and date at job start Mon Mar 30 2020 23:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00376 * 2 1 4 4 H 1.48495 * 109.47471 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47064 * 299.99866 * 3 2 1 6 6 H 1.48509 * 109.47359 * 59.99691 * 3 2 1 7 7 C 1.37875 * 119.99487 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99781 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00390 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.81399 * 102.99888 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47341 * 180.02562 * 11 10 9 13 13 H 1.09006 * 110.41382 * 307.31204 * 12 11 10 14 14 C 1.54477 * 110.37491 * 185.00128 * 12 11 10 15 15 C 1.54510 * 104.18108 * 217.25643 * 14 12 11 16 16 C 1.54478 * 104.06500 * 359.93120 * 15 14 12 17 17 H 1.09003 * 110.36949 * 265.14479 * 16 15 14 18 18 C 1.50702 * 110.37211 * 142.92279 * 16 15 14 19 19 C 1.38230 * 119.99831 * 279.72524 * 18 16 15 20 20 C 1.38237 * 120.00117 * 179.76691 * 19 18 16 21 21 C 1.38236 * 119.99744 * 0.48326 * 20 19 18 22 22 C 1.38236 * 119.99830 * 359.79220 * 21 20 19 23 23 C 1.38234 * 119.99878 * 99.99958 * 18 16 15 24 24 O 1.44415 * 104.80258 * 23.97587 * 16 15 14 25 25 H 0.97001 * 119.99322 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46685 * 59.99799 * 9 7 2 27 27 H 1.08994 * 109.47100 * 300.00191 * 9 7 2 28 28 H 1.08995 * 109.47251 * 60.00294 * 11 10 9 29 29 H 1.08998 * 109.47037 * 299.99913 * 11 10 9 30 30 H 1.09002 * 110.51371 * 98.54158 * 14 12 11 31 31 H 1.08994 * 110.51108 * 335.96806 * 14 12 11 32 32 H 1.09000 * 110.51039 * 118.57850 * 15 14 12 33 33 H 1.09007 * 110.50911 * 241.14516 * 15 14 12 34 34 H 1.08004 * 120.00171 * 359.97438 * 19 18 16 35 35 H 1.07998 * 120.00195 * 180.25285 * 20 19 18 36 36 H 1.07997 * 119.99926 * 179.76559 * 21 20 19 37 37 H 1.07999 * 119.99794 * 179.97438 * 22 21 20 38 38 H 1.07999 * 120.00428 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 6 1.3513 -5.3367 -0.0003 12 6 2.2081 -6.6043 0.0003 13 1 2.9346 -6.5726 -0.8117 14 6 1.3141 -7.8577 -0.1266 15 6 1.9974 -8.9037 0.7825 16 6 3.2263 -8.1606 1.3518 17 1 4.1092 -8.3692 0.7476 18 6 3.4653 -8.5628 2.7844 19 6 2.7159 -7.9927 3.7964 20 6 2.9318 -8.3651 5.1101 21 6 3.9040 -9.3002 5.4125 22 6 4.6572 -9.8660 4.4009 23 6 4.4378 -9.4975 3.0868 24 8 2.8810 -6.7607 1.2711 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 0.7225 -5.3232 -0.8904 29 1 0.7219 -5.3236 0.8895 30 1 1.2898 -8.2067 -1.1590 31 1 0.3055 -7.6448 0.2274 32 1 1.3273 -9.2061 1.5873 33 1 2.3087 -9.7708 0.2000 34 1 1.9595 -7.2589 3.5606 35 1 2.3436 -7.9228 5.9004 36 1 4.0752 -9.5884 6.4392 37 1 5.4170 -10.5963 4.6373 38 1 5.0260 -9.9399 2.2965 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882177656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:54 Heat of formation + Delta-G solvation = -52.528793 kcal Electronic energy + Delta-G solvation = -18420.238942 eV Core-core repulsion = 15545.376990 eV Total energy + Delta-G solvation = -2874.861952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.01445 -39.40463 -35.31038 -33.82391 -33.22063 -31.76473 -31.00464 -30.66030 -26.88808 -25.23255 -23.75594 -23.38142 -22.13380 -21.57480 -18.71148 -18.01904 -17.57691 -17.12786 -16.87719 -16.46582 -16.24921 -15.30861 -15.22537 -14.79463 -14.65793 -14.55665 -14.38448 -14.21041 -13.99604 -13.66178 -13.51600 -12.93563 -12.76973 -12.71065 -12.55409 -12.38674 -11.95055 -11.84074 -11.80503 -11.53082 -11.34993 -10.89738 -10.76840 -10.61840 -9.81252 -9.62321 -8.45175 -8.35251 -6.48452 0.40025 0.51063 0.98946 1.38507 1.38990 1.54349 2.03449 2.35696 2.69252 2.99039 3.01897 3.50098 3.66083 3.93480 3.95179 4.02773 4.11337 4.18273 4.23166 4.31962 4.41273 4.53502 4.56585 4.66612 4.73439 4.85758 4.90719 4.91395 4.92079 5.06988 5.10777 5.14975 5.18109 5.55470 5.56192 5.62746 5.63939 5.87269 5.98398 6.12060 6.58957 7.19558 8.77268 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024061 B = 0.003397 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.446695 B = 8241.087154 C = 8903.398804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.978 3.022 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.093 3.907 10 S -0.314 6.314 11 C -0.072 4.072 12 C 0.096 3.904 13 H 0.079 0.921 14 C -0.138 4.138 15 C -0.133 4.133 16 C 0.105 3.895 17 H 0.086 0.914 18 C -0.095 4.095 19 C -0.117 4.117 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.117 4.117 24 O -0.380 6.380 25 H 0.271 0.729 26 H 0.016 0.984 27 H 0.010 0.990 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 -23.611 4.865 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.078 0.922 9 C -0.055 4.055 10 S -0.087 6.087 11 C -0.220 4.220 12 C 0.038 3.962 13 H 0.096 0.904 14 C -0.178 4.178 15 C -0.171 4.171 16 C 0.048 3.952 17 H 0.104 0.896 18 C -0.096 4.096 19 C -0.135 4.135 20 C -0.152 4.152 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.135 4.135 24 O -0.300 6.300 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.028 0.972 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.149 0.851 36 H 0.162 0.838 37 H 0.168 0.832 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.289 -23.293 5.021 24.644 hybrid contribution -1.418 1.159 -0.058 1.832 sum 4.871 -22.134 4.964 23.201 Atomic orbital electron populations 1.70070 1.07679 1.28540 1.50165 1.25942 0.95934 1.03117 0.93722 0.85198 0.78677 0.77640 0.78340 1.19046 1.19463 1.19704 1.21031 0.93374 0.90316 1.52813 0.92196 1.20721 0.94092 0.92946 0.97717 1.86624 1.21312 1.02761 1.97963 1.23400 0.99707 0.93806 1.05126 1.22740 0.93558 0.92971 0.86977 0.90357 1.22996 0.99484 0.92907 1.02371 1.22936 0.95924 0.98762 0.99457 1.21974 0.98505 0.81457 0.93307 0.89613 1.19796 0.97473 0.98156 0.94130 1.21076 0.99851 0.99125 0.93434 1.21414 0.99199 0.98418 0.96205 1.21509 0.95527 0.96571 1.00682 1.21466 1.00022 1.00412 0.92278 1.21227 0.96897 0.97385 0.97972 1.89334 1.77444 1.25641 1.37569 0.92025 0.96540 0.97203 0.88057 0.90763 0.87649 0.90285 0.90740 0.87651 0.87465 0.85063 0.83756 0.83237 0.83917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 2 C 0.01 0.78 5.46 84.65 0.46 1.24 16 3 Si 0.98 44.93 29.54 68.60 2.03 46.96 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.54 -32.05 9.13 25.60 0.23 -31.82 16 8 H 0.06 3.59 7.71 -2.91 -0.02 3.57 16 9 C 0.09 5.19 5.70 71.24 0.41 5.59 16 10 S -0.31 -14.70 21.58 -56.49 -1.22 -15.92 16 11 C -0.07 -2.52 5.56 71.98 0.40 -2.12 16 12 C 0.10 2.71 3.25 31.10 0.10 2.81 16 13 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 14 C -0.14 -2.69 6.62 31.61 0.21 -2.48 16 15 C -0.13 -2.36 6.62 31.61 0.21 -2.15 16 16 C 0.10 2.44 3.49 30.35 0.11 2.54 16 17 H 0.09 1.76 8.06 -2.39 -0.02 1.74 16 18 C -0.10 -2.25 4.93 -19.87 -0.10 -2.34 16 19 C -0.12 -3.01 9.37 22.27 0.21 -2.81 16 20 C -0.13 -2.91 10.05 22.27 0.22 -2.68 16 21 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 22 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 23 C -0.12 -2.18 9.69 22.27 0.22 -1.96 16 24 O -0.38 -12.16 10.19 -148.98 -1.52 -13.68 16 25 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 26 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.01 0.57 8.14 -2.39 -0.02 0.56 16 28 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 29 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.55 7.87 -2.39 -0.02 1.53 16 32 H 0.07 1.37 7.86 -2.39 -0.02 1.35 16 33 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.11 3.11 7.67 -2.91 -0.02 3.09 16 35 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 36 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 38 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -70.03 332.59 3.72 -66.31 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.02 Total: 11.76 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 3.13 Total: -39.97 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.28 Total: -55.45 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -1.52 Total: -13.68 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: -14.70 SS G_CDS: -1.22 Total: -15.92 kcal Total: -70.03 3.72 -66.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882177656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.778 kcal (2) G-P(sol) polarization free energy of solvation -70.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds