Wall clock time and date at job start Mon Mar 30 2020 23:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00358 * 2 1 4 4 H 1.48499 * 109.47017 * 239.99810 * 3 2 1 5 5 H 1.48497 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47254 * 120.00179 * 3 2 1 7 7 C 1.37884 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00107 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99734 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.46996 * 179.97438 * 9 7 2 11 11 C 1.81406 * 103.00150 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47014 * 179.97438 * 11 10 9 13 13 H 1.09007 * 110.35208 * 57.86212 * 12 11 10 14 14 C 1.54947 * 110.30771 * 179.97438 * 12 11 10 15 15 C 1.55306 * 100.97824 * 155.34129 * 14 12 11 16 16 C 1.54429 * 102.23000 * 325.92130 * 15 14 12 17 17 H 1.09001 * 109.86919 * 261.75408 * 16 15 14 18 18 C 1.50705 * 109.85344 * 140.83502 * 16 15 14 19 19 C 1.38233 * 119.99663 * 280.10658 * 18 16 15 20 20 C 1.38237 * 119.99696 * 179.78592 * 19 18 16 21 21 C 1.38234 * 119.99877 * 0.44040 * 20 19 18 22 22 C 1.38228 * 120.00140 * 359.81219 * 21 20 19 23 23 C 1.38231 * 120.00170 * 100.37724 * 18 16 15 24 24 O 1.43234 * 107.60919 * 21.29662 * 16 15 14 25 25 H 0.97003 * 119.99869 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47186 * 59.99300 * 9 7 2 27 27 H 1.09004 * 109.47021 * 299.99053 * 9 7 2 28 28 H 1.09005 * 109.46539 * 60.00155 * 11 10 9 29 29 H 1.08994 * 109.46797 * 299.99952 * 11 10 9 30 30 H 1.09002 * 111.12777 * 273.28398 * 14 12 11 31 31 H 1.08995 * 111.12300 * 37.40291 * 14 12 11 32 32 H 1.09001 * 110.84858 * 84.08537 * 15 14 12 33 33 H 1.09006 * 110.84549 * 207.69503 * 15 14 12 34 34 H 1.07999 * 120.00515 * 359.97438 * 19 18 16 35 35 H 1.07998 * 120.00234 * 180.27342 * 20 19 18 36 36 H 1.07998 * 119.99973 * 179.83022 * 21 20 19 37 37 H 1.08003 * 120.00274 * 180.02562 * 22 21 20 38 38 H 1.08007 * 119.99684 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4295 -3.8780 0.0005 11 6 1.3512 -5.3368 0.0013 12 6 2.2080 -6.6043 0.0008 13 1 2.8713 -6.6139 0.8657 14 6 1.3052 -7.8636 0.0021 15 6 2.2583 -8.9115 -0.6348 16 6 3.0623 -8.0555 -1.6377 17 1 2.6400 -8.1615 -2.6370 18 6 4.5044 -8.4930 -1.6432 19 6 5.3608 -8.0631 -0.6470 20 6 6.6826 -8.4679 -0.6495 21 6 7.1500 -9.2954 -1.6534 22 6 6.2949 -9.7211 -2.6525 23 6 4.9721 -9.3197 -2.6475 24 8 2.9702 -6.6905 -1.2137 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 0.7217 -5.3237 -0.8885 29 1 0.7224 -5.3232 0.8915 30 1 1.0300 -8.1487 1.0175 31 1 0.4193 -7.7125 -0.6146 32 1 2.9158 -9.3461 0.1182 33 1 1.6927 -9.6869 -1.1514 34 1 4.9966 -7.4133 0.1351 35 1 7.3507 -8.1356 0.1312 36 1 8.1833 -9.6095 -1.6569 37 1 6.6600 -10.3679 -3.4366 38 1 4.3038 -9.6524 -3.4281 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882177657.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:57 Heat of formation + Delta-G solvation = -35.894434 kcal Electronic energy + Delta-G solvation = -18486.236737 eV Core-core repulsion = 15612.096105 eV Total energy + Delta-G solvation = -2874.140632 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.18310 -38.45658 -33.09204 -32.79129 -32.26585 -30.94723 -29.96544 -28.46370 -25.89278 -23.14097 -22.65135 -22.51881 -21.31980 -20.56543 -17.29203 -16.71672 -16.43393 -15.87272 -15.42809 -15.26285 -14.55652 -14.48702 -14.05327 -13.61574 -13.41008 -13.17867 -12.94737 -12.69218 -12.51105 -12.34491 -12.03166 -11.87784 -11.61977 -11.31110 -11.21024 -11.03231 -10.87154 -10.80188 -10.58044 -9.86923 -9.54483 -9.45808 -8.98714 -8.77292 -8.71538 -8.56086 -6.54089 -6.14493 -4.18018 1.23895 1.33910 2.69825 3.31914 3.34374 3.39448 3.58488 3.96848 4.02074 4.36606 4.40037 4.50576 4.72774 4.82159 4.89185 5.05026 5.06671 5.12591 5.22570 5.25699 5.44912 5.47408 5.49208 5.57363 5.62828 5.72455 5.85638 5.89399 5.95459 6.03720 6.20775 6.37036 6.44855 6.56876 6.91724 7.14988 7.15564 7.18201 7.80440 8.07865 8.83765 9.44523 10.97027 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024859 B = 0.003474 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.085056 B = 8058.336591 C = 8845.183324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.087 3.913 10 S -0.290 6.290 11 C -0.092 4.092 12 C 0.101 3.899 13 H 0.076 0.924 14 C -0.149 4.149 15 C -0.143 4.143 16 C 0.116 3.884 17 H 0.086 0.914 18 C -0.092 4.092 19 C -0.094 4.094 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.113 4.113 24 O -0.347 6.347 25 H 0.265 0.735 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.634 -21.996 -1.838 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.085 0.915 9 C -0.060 4.060 10 S -0.063 6.063 11 C -0.240 4.240 12 C 0.043 3.957 13 H 0.094 0.906 14 C -0.188 4.188 15 C -0.181 4.181 16 C 0.058 3.942 17 H 0.104 0.896 18 C -0.093 4.093 19 C -0.112 4.112 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.131 4.131 24 O -0.266 6.266 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.659 -21.655 -1.944 23.051 hybrid contribution -1.046 0.732 0.057 1.278 sum 6.613 -20.922 -1.888 22.024 Atomic orbital electron populations 1.69949 1.06146 1.27337 1.49908 1.24966 0.94966 0.99255 0.94731 0.86415 0.79402 0.81887 0.78980 1.19889 1.21103 1.19911 1.20662 0.93452 0.88821 1.52001 0.91535 1.21036 0.93883 0.91234 0.99833 1.86771 1.20346 1.01289 1.97919 1.23356 1.00224 0.95981 1.04469 1.22683 0.91673 0.93011 0.88375 0.90617 1.23357 0.98831 0.94327 1.02305 1.23161 0.97959 0.98322 0.98651 1.21586 0.91046 0.82939 0.98667 0.89576 1.20197 0.96036 0.97639 0.95397 1.21036 0.93338 0.98335 0.98472 1.21184 0.95796 0.98078 0.98892 1.21143 0.99562 0.98437 0.95044 1.21071 0.93703 1.00591 0.98847 1.20944 0.95836 0.98366 0.97991 1.88703 1.73708 1.23196 1.40953 0.92529 0.94773 0.94854 0.90379 0.89843 0.89672 0.89985 0.90303 0.89908 0.85767 0.86058 0.86311 0.86213 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.51 -14.85 9.13 -34.44 -0.31 -15.16 16 8 H 0.07 1.94 7.71 -52.49 -0.40 1.54 16 9 C 0.09 2.34 5.70 36.01 0.21 2.55 16 10 S -0.29 -6.62 21.45 -107.50 -2.31 -8.93 16 11 C -0.09 -1.59 5.68 37.15 0.21 -1.38 16 12 C 0.10 1.44 3.45 -25.71 -0.09 1.36 16 13 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 14 C -0.15 -1.56 6.57 -24.48 -0.16 -1.72 16 15 C -0.14 -1.36 6.54 -24.76 -0.16 -1.52 16 16 C 0.12 1.40 3.73 -27.13 -0.10 1.30 16 17 H 0.09 0.97 8.03 -51.93 -0.42 0.55 16 18 C -0.09 -1.12 4.85 -104.62 -0.51 -1.63 16 19 C -0.09 -1.18 9.34 -39.58 -0.37 -1.55 16 20 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 21 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16 22 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 23 C -0.11 -1.19 9.68 -39.59 -0.38 -1.58 16 24 O -0.35 -5.51 9.75 -35.23 -0.34 -5.86 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.03 0.92 8.14 -51.92 -0.42 0.50 16 28 H 0.08 1.36 8.14 -51.92 -0.42 0.94 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 32 H 0.08 0.73 7.82 -51.93 -0.41 0.32 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.12 1.63 7.69 -52.49 -0.40 1.23 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.12 1.02 8.05 -52.48 -0.42 0.60 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -31.71 332.39 -10.72 -42.43 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.83 Total: -1.10 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -2.96 Total: -22.55 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.34 Total: -5.86 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -6.62 SS G_CDS: -2.31 Total: -8.93 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.71 -10.72 -42.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882177657.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.539 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds