Wall clock time and date at job start Mon Mar 30 2020 23:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00358 * 2 1 4 4 H 1.48499 * 109.47017 * 239.99810 * 3 2 1 5 5 H 1.48497 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47254 * 120.00179 * 3 2 1 7 7 C 1.37884 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00107 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99734 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.46996 * 179.97438 * 9 7 2 11 11 C 1.81406 * 103.00150 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47014 * 179.97438 * 11 10 9 13 13 H 1.09007 * 110.35208 * 57.86212 * 12 11 10 14 14 C 1.54947 * 110.30771 * 179.97438 * 12 11 10 15 15 C 1.55306 * 100.97824 * 155.34129 * 14 12 11 16 16 C 1.54429 * 102.23000 * 325.92130 * 15 14 12 17 17 H 1.09001 * 109.86919 * 261.75408 * 16 15 14 18 18 C 1.50705 * 109.85344 * 140.83502 * 16 15 14 19 19 C 1.38233 * 119.99663 * 280.10658 * 18 16 15 20 20 C 1.38237 * 119.99696 * 179.78592 * 19 18 16 21 21 C 1.38234 * 119.99877 * 0.44040 * 20 19 18 22 22 C 1.38228 * 120.00140 * 359.81219 * 21 20 19 23 23 C 1.38231 * 120.00170 * 100.37724 * 18 16 15 24 24 O 1.43234 * 107.60919 * 21.29662 * 16 15 14 25 25 H 0.97003 * 119.99869 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47186 * 59.99300 * 9 7 2 27 27 H 1.09004 * 109.47021 * 299.99053 * 9 7 2 28 28 H 1.09005 * 109.46539 * 60.00155 * 11 10 9 29 29 H 1.08994 * 109.46797 * 299.99952 * 11 10 9 30 30 H 1.09002 * 111.12777 * 273.28398 * 14 12 11 31 31 H 1.08995 * 111.12300 * 37.40291 * 14 12 11 32 32 H 1.09001 * 110.84858 * 84.08537 * 15 14 12 33 33 H 1.09006 * 110.84549 * 207.69503 * 15 14 12 34 34 H 1.07999 * 120.00515 * 359.97438 * 19 18 16 35 35 H 1.07998 * 120.00234 * 180.27342 * 20 19 18 36 36 H 1.07998 * 119.99973 * 179.83022 * 21 20 19 37 37 H 1.08003 * 120.00274 * 180.02562 * 22 21 20 38 38 H 1.08007 * 119.99684 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4295 -3.8780 0.0005 11 6 1.3512 -5.3368 0.0013 12 6 2.2080 -6.6043 0.0008 13 1 2.8713 -6.6139 0.8657 14 6 1.3052 -7.8636 0.0021 15 6 2.2583 -8.9115 -0.6348 16 6 3.0623 -8.0555 -1.6377 17 1 2.6400 -8.1615 -2.6370 18 6 4.5044 -8.4930 -1.6432 19 6 5.3608 -8.0631 -0.6470 20 6 6.6826 -8.4679 -0.6495 21 6 7.1500 -9.2954 -1.6534 22 6 6.2949 -9.7211 -2.6525 23 6 4.9721 -9.3197 -2.6475 24 8 2.9702 -6.6905 -1.2137 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 0.7217 -5.3237 -0.8885 29 1 0.7224 -5.3232 0.8915 30 1 1.0300 -8.1487 1.0175 31 1 0.4193 -7.7125 -0.6146 32 1 2.9158 -9.3461 0.1182 33 1 1.6927 -9.6869 -1.1514 34 1 4.9966 -7.4133 0.1351 35 1 7.3507 -8.1356 0.1312 36 1 8.1833 -9.6095 -1.6569 37 1 6.6600 -10.3679 -3.4366 38 1 4.3038 -9.6524 -3.4281 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882177657.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:56 Heat of formation + Delta-G solvation = -52.496273 kcal Electronic energy + Delta-G solvation = -18486.956647 eV Core-core repulsion = 15612.096105 eV Total energy + Delta-G solvation = -2874.860542 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.11822 -39.34303 -35.30445 -33.79636 -33.25232 -31.74789 -30.98863 -30.65448 -26.96663 -25.20062 -23.51259 -23.41805 -22.35850 -21.49146 -18.68047 -18.18130 -17.63838 -17.17617 -16.81456 -16.35812 -16.27302 -15.42402 -15.02090 -14.86263 -14.66018 -14.42934 -14.29371 -14.17776 -13.92351 -13.80356 -13.31374 -12.93406 -12.81767 -12.73180 -12.56841 -12.36128 -12.01658 -11.88671 -11.84319 -11.68845 -11.32473 -10.79117 -10.75438 -10.48968 -9.80212 -9.59155 -8.42666 -8.34538 -6.47865 0.42446 0.51994 1.01164 1.38574 1.42240 1.51259 2.06316 2.36037 2.69256 2.99634 3.07268 3.47396 3.65851 3.76921 3.99661 4.03282 4.11753 4.21301 4.26214 4.31220 4.46499 4.50571 4.58180 4.67891 4.78023 4.86121 4.91376 4.92372 4.93488 4.99624 5.10717 5.17423 5.23671 5.55532 5.58401 5.63880 5.71387 5.88227 6.11385 6.15540 6.59035 7.19916 8.77560 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024859 B = 0.003474 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.085056 B = 8058.336591 C = 8845.183324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.539 4.539 8 H 0.059 0.941 9 C 0.093 3.907 10 S -0.313 6.313 11 C -0.077 4.077 12 C 0.100 3.900 13 H 0.071 0.929 14 C -0.138 4.138 15 C -0.131 4.131 16 C 0.108 3.892 17 H 0.094 0.906 18 C -0.107 4.107 19 C -0.118 4.118 20 C -0.133 4.133 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.120 4.120 24 O -0.381 6.381 25 H 0.271 0.729 26 H 0.010 0.990 27 H 0.015 0.985 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.132 0.868 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.303 -23.595 -2.310 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.800 3.200 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.078 0.922 9 C -0.055 4.055 10 S -0.086 6.086 11 C -0.226 4.226 12 C 0.042 3.958 13 H 0.089 0.911 14 C -0.177 4.177 15 C -0.169 4.169 16 C 0.051 3.949 17 H 0.111 0.889 18 C -0.108 4.108 19 C -0.137 4.137 20 C -0.151 4.151 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.138 4.138 24 O -0.301 6.301 25 H 0.080 0.920 26 H 0.028 0.972 27 H 0.033 0.967 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.329 -23.265 -2.414 24.829 hybrid contribution -1.238 1.104 0.167 1.667 sum 7.092 -22.161 -2.247 23.376 Atomic orbital electron populations 1.70050 1.07678 1.28670 1.50031 1.25933 0.95926 1.03078 0.93693 0.85319 0.78238 0.77109 0.79333 1.19257 1.19808 1.18994 1.20980 0.93366 0.90389 1.53031 0.92239 1.20710 0.94123 0.92986 0.97665 1.86679 1.21248 1.02718 1.97951 1.23517 0.99777 0.94105 1.05154 1.22695 0.92048 0.93032 0.88062 0.91068 1.23334 0.98309 0.92093 1.03958 1.23135 0.97484 0.98129 0.98121 1.21814 0.91766 0.81736 0.99629 0.88859 1.20309 0.96060 0.98440 0.95947 1.21050 0.94451 0.99273 0.98876 1.21405 0.95446 0.98473 0.99818 1.21484 1.00895 0.97686 0.94474 1.21461 0.93328 1.00270 0.99214 1.21235 0.96724 0.97930 0.97900 1.88659 1.74105 1.25943 1.41352 0.92007 0.97159 0.96660 0.90452 0.88316 0.87516 0.89287 0.90050 0.87236 0.87525 0.85046 0.83881 0.83478 0.84153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 2 C 0.01 0.84 5.46 84.66 0.46 1.30 16 3 Si 0.98 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -32.29 9.13 25.60 0.23 -32.06 16 8 H 0.06 3.56 7.71 -2.91 -0.02 3.54 16 9 C 0.09 5.19 5.70 71.24 0.41 5.60 16 10 S -0.31 -14.75 21.45 -56.49 -1.21 -15.96 16 11 C -0.08 -2.68 5.68 71.98 0.41 -2.27 16 12 C 0.10 2.82 3.45 31.26 0.11 2.93 16 13 H 0.07 2.05 8.09 -2.38 -0.02 2.03 16 14 C -0.14 -2.57 6.57 32.05 0.21 -2.36 16 15 C -0.13 -2.19 6.54 31.87 0.21 -1.98 16 16 C 0.11 2.50 3.73 30.34 0.11 2.61 16 17 H 0.09 1.96 8.03 -2.39 -0.02 1.94 16 18 C -0.11 -2.52 4.85 -19.87 -0.10 -2.61 16 19 C -0.12 -3.00 9.34 22.27 0.21 -2.80 16 20 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 21 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 22 C -0.12 -2.13 10.05 22.27 0.22 -1.90 16 23 C -0.12 -2.30 9.68 22.27 0.22 -2.09 16 24 O -0.38 -12.14 9.75 -148.98 -1.45 -13.60 16 25 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 26 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.57 8.05 -2.39 -0.02 1.55 16 32 H 0.08 1.34 7.82 -2.39 -0.02 1.32 16 33 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.11 2.97 7.69 -2.91 -0.02 2.94 16 35 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.14 2.02 8.05 -2.91 -0.02 1.99 16 Total: -1.00 -70.34 332.39 3.81 -66.53 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.02 Total: 11.91 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 3.15 Total: -40.35 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.28 Total: -55.54 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.45 Total: -13.60 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: -14.75 SS G_CDS: -1.21 Total: -15.96 kcal Total: -70.34 3.81 -66.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882177657.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.033 kcal (2) G-P(sol) polarization free energy of solvation -70.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds