Wall clock time and date at job start Tue Mar 31 2020 00:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86792 * 120.00335 * 2 1 4 4 H 1.48496 * 109.47199 * 239.99643 * 3 2 1 5 5 H 1.48497 * 109.47283 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47305 * 119.99498 * 3 2 1 7 7 C 1.40034 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99972 * 179.97438 * 7 2 1 9 9 C 1.41337 * 119.99675 * 0.02562 * 7 2 1 10 10 C 1.40618 * 119.78591 * 179.97438 * 9 7 2 11 11 C 1.38302 * 119.12750 * 179.97438 * 10 9 7 12 12 C 1.38697 * 118.67280 * 359.75488 * 11 10 9 13 13 C 1.39637 * 119.49158 * 0.51380 * 12 11 10 14 14 N 1.39269 * 119.57325 * 179.75159 * 13 12 11 15 15 C 1.34769 * 120.00086 * 185.45879 * 14 13 12 16 16 O 1.21272 * 119.99970 * 355.16052 * 15 14 13 17 17 C 1.50707 * 120.00332 * 175.16129 * 15 14 13 18 18 H 1.08995 * 109.52492 * 305.00269 * 17 15 14 19 19 C 1.53143 * 109.52199 * 65.12852 * 17 15 14 20 20 O 1.43066 * 109.15325 * 175.21543 * 19 17 15 21 21 C 1.43075 * 113.59243 * 302.05120 * 20 19 17 22 22 C 1.53143 * 109.15270 * 57.94849 * 21 20 19 23 23 O 1.43069 * 109.52595 * 184.86842 * 17 15 14 24 24 N 1.31930 * 120.85144 * 359.47442 * 13 12 11 25 25 H 0.97003 * 119.99816 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.43500 * 359.97438 * 10 9 7 27 27 H 1.08007 * 120.66282 * 179.97438 * 11 10 9 28 28 H 1.07995 * 120.25696 * 180.25748 * 12 11 10 29 29 H 0.97000 * 119.99795 * 5.72764 * 14 13 12 30 30 H 1.09003 * 109.52528 * 295.12097 * 19 17 15 31 31 H 1.09002 * 109.52520 * 55.31137 * 19 17 15 32 32 H 1.09006 * 109.52821 * 177.85236 * 21 20 19 33 33 H 1.09001 * 109.52600 * 297.98147 * 21 20 19 34 34 H 1.09002 * 109.52520 * 64.59406 * 22 21 20 35 35 H 1.09005 * 109.52388 * 184.71850 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0953 1.6962 -1.2124 5 1 1.2766 2.7464 -0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0876 -1.2128 0.0001 9 6 1.3008 -2.4367 0.0005 10 6 2.0083 -3.6519 0.0005 11 6 1.3030 -4.8416 0.0011 12 6 -0.0832 -4.7934 0.0068 13 6 -0.7280 -3.5548 0.0010 14 7 -2.1198 -3.5045 0.0014 15 6 -2.7512 -2.3197 -0.1152 16 8 -2.1105 -1.2901 -0.1322 17 6 -4.2537 -2.2740 -0.2244 18 1 -4.5778 -2.9017 -1.0544 19 6 -4.8772 -2.7851 1.0776 20 8 -6.2982 -2.6341 1.0084 21 6 -6.7206 -1.2858 0.7833 22 6 -6.0970 -0.7747 -0.5188 23 8 -4.6759 -0.9259 -0.4510 24 7 -0.0358 -2.4317 0.0005 25 1 -0.4850 0.8401 -0.0004 26 1 3.0883 -3.6562 0.0001 27 1 1.8212 -5.7892 0.0007 28 1 -0.6594 -5.7068 0.0116 29 1 -2.6346 -4.3219 0.0897 30 1 -4.6288 -3.8379 1.2118 31 1 -4.4901 -2.2085 1.9178 32 1 -7.8073 -1.2528 0.7043 33 1 -6.3965 -0.6590 1.6141 34 1 -6.4841 -1.3513 -1.3589 35 1 -6.3465 0.2778 -0.6536 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882476687.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:02 Heat of formation + Delta-G solvation = -80.543645 kcal Electronic energy + Delta-G solvation = -21842.964178 eV Core-core repulsion = 18420.594196 eV Total energy + Delta-G solvation = -3422.369982 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.53347 -40.44522 -39.05897 -37.07005 -35.93133 -34.89723 -32.91178 -32.20132 -30.89514 -29.11375 -27.44738 -26.07247 -24.03433 -23.20286 -22.51740 -21.07111 -19.70667 -18.35956 -18.24438 -17.60056 -17.31587 -16.92623 -16.46536 -16.36827 -16.24932 -15.71734 -15.40927 -15.37928 -14.71764 -14.50537 -14.08678 -13.91991 -13.65831 -13.21847 -12.87342 -12.73989 -12.61042 -12.57675 -12.32425 -11.88764 -11.79486 -11.58889 -11.51999 -10.88270 -10.64024 -10.24614 -9.90946 -9.10561 -8.85569 -8.05893 -6.42750 0.89607 1.24665 1.38495 1.50753 1.52312 1.84669 1.99406 2.25690 2.64681 2.95013 2.98483 3.48054 3.70612 3.85457 3.98201 4.05242 4.14381 4.26319 4.38814 4.47190 4.55531 4.73742 4.78528 4.79995 4.87262 4.96319 5.05387 5.26180 5.67365 5.80746 5.85914 5.91830 5.95685 6.13948 6.36500 6.69526 6.82616 7.06317 7.60027 8.33218 8.55593 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.006098 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.693273 B = 4590.510856 C = 6002.975038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C 0.010 3.990 3 Si 0.975 3.025 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.467 4.467 8 H 0.087 0.913 9 C 0.237 3.763 10 C -0.327 4.327 11 C -0.034 4.034 12 C -0.341 4.341 13 C 0.348 3.652 14 N -0.648 5.648 15 C 0.468 3.532 16 O -0.442 6.442 17 C 0.052 3.948 18 H 0.111 0.889 19 C 0.046 3.954 20 O -0.380 6.380 21 C 0.019 3.981 22 C 0.017 3.983 23 O -0.388 6.388 24 N -0.512 5.512 25 H 0.269 0.731 26 H 0.105 0.895 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.423 0.577 30 H 0.137 0.863 31 H 0.050 0.950 32 H 0.140 0.860 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.628 -4.576 0.510 14.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.313 5.313 2 C -0.215 4.215 3 Si 0.795 3.205 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.498 4.498 8 H 0.105 0.895 9 C 0.111 3.889 10 C -0.350 4.350 11 C -0.058 4.058 12 C -0.366 4.366 13 C 0.109 3.891 14 N -0.299 5.299 15 C 0.250 3.750 16 O -0.306 6.306 17 C -0.009 4.009 18 H 0.129 0.871 19 C -0.032 4.032 20 O -0.298 6.298 21 C -0.057 4.057 22 C -0.059 4.059 23 O -0.307 6.307 24 N -0.232 5.232 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.157 0.843 28 H 0.154 0.846 29 H 0.261 0.739 30 H 0.155 0.845 31 H 0.069 0.931 32 H 0.158 0.842 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.864 -2.797 0.476 14.152 hybrid contribution 0.748 -0.325 -0.025 0.816 sum -13.116 -3.122 0.451 13.490 Atomic orbital electron populations 1.70504 1.07345 1.28078 1.25334 1.27056 0.95973 1.04099 0.94357 0.85388 0.78615 0.76467 0.79989 1.18367 1.20105 1.18251 1.19896 0.94501 0.90468 1.44898 0.89497 1.18866 0.87875 0.93456 0.88698 1.21819 0.99263 0.93809 1.20131 1.21057 0.93583 0.97336 0.93844 1.20985 0.95178 0.95656 1.24798 1.19102 0.84830 0.91191 0.93928 1.43205 1.03765 1.09997 1.72942 1.20949 0.89687 0.84786 0.79563 1.91175 1.66304 1.32714 1.40423 1.22547 0.91083 0.86422 1.00886 0.87118 1.23114 0.81547 1.04079 0.94434 1.88075 1.20508 1.28189 1.93069 1.23488 1.02334 0.83118 0.96768 1.23597 0.79451 1.04482 0.98346 1.88229 1.23683 1.25451 1.93335 1.68636 1.07528 1.25642 1.21361 0.92005 0.87699 0.84324 0.84569 0.73884 0.84521 0.93135 0.84244 0.92505 0.90597 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -41.33 9.00 21.84 0.20 -41.13 16 2 C 0.01 0.58 5.50 85.29 0.47 1.05 16 3 Si 0.97 41.74 29.56 68.60 2.03 43.76 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.47 -27.03 9.14 23.47 0.21 -26.81 16 8 H 0.09 4.68 7.85 -2.91 -0.02 4.66 16 9 C 0.24 13.83 6.55 40.21 0.26 14.10 16 10 C -0.33 -16.56 9.83 22.87 0.22 -16.34 16 11 C -0.03 -1.46 10.15 22.39 0.23 -1.24 16 12 C -0.34 -14.27 9.96 22.72 0.23 -14.04 16 13 C 0.35 16.80 7.43 133.23 0.99 17.79 16 14 N -0.65 -24.58 5.35 -308.38 -1.65 -26.23 16 15 C 0.47 19.46 7.14 87.66 0.63 20.08 16 16 O -0.44 -24.12 12.29 15.94 0.20 -23.92 16 17 C 0.05 1.58 3.26 29.90 0.10 1.67 16 18 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 19 C 0.05 1.12 6.28 72.03 0.45 1.57 16 20 O -0.38 -8.56 10.85 -136.05 -1.48 -10.04 16 21 C 0.02 0.36 7.05 72.03 0.51 0.87 16 22 C 0.02 0.37 7.05 72.03 0.51 0.88 16 23 O -0.39 -13.05 10.03 -122.91 -1.23 -14.28 16 24 N -0.51 -29.85 5.74 -186.36 -1.07 -30.92 16 25 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 26 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 27 H 0.14 4.72 8.06 -2.91 -0.02 4.69 16 28 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 29 H 0.42 11.15 8.46 -92.71 -0.78 10.36 16 30 H 0.14 2.49 7.91 -2.39 -0.02 2.47 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.14 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -79.56 298.99 2.14 -77.43 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.34 Total: 25.75 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 4.81 Total: -0.43 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -2.52 Total: -98.28 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -2.51 Total: -48.24 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -79.56 2.14 -77.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882476687.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.117 kcal (2) G-P(sol) polarization free energy of solvation -79.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds