Wall clock time and date at job start Tue Mar 31 2020 01:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34747 * 116.99832 * 2 1 4 4 O 1.21507 * 119.99725 * 359.97438 * 3 2 1 5 5 C 1.47469 * 120.00333 * 180.02562 * 3 2 1 6 6 C 1.40341 * 120.48018 * 270.00059 * 5 3 2 7 7 C 1.50703 * 120.75967 * 359.97438 * 6 5 3 8 8 C 1.36909 * 118.48651 * 180.24760 * 6 5 3 9 9 C 1.39384 * 119.37536 * 359.46534 * 8 6 5 10 10 N 1.38657 * 119.53373 * 180.25052 * 9 8 6 11 11 C 1.34777 * 120.00129 * 174.88591 * 10 9 8 12 12 O 1.21706 * 119.99798 * 5.10701 * 11 10 9 13 13 C 1.46210 * 120.00188 * 185.09793 * 11 10 9 14 14 H 1.08010 * 119.99912 * 0.02562 * 13 11 10 15 15 C 1.40125 * 120.00460 * 180.02562 * 13 11 10 16 16 N 1.30639 * 119.99697 * 0.02562 * 15 13 11 17 17 Si 1.86791 * 120.00075 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47503 * 60.00103 * 17 15 13 19 19 H 1.48501 * 109.47118 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47407 * 300.00067 * 17 15 13 21 21 N 1.32607 * 120.93688 * 0.54993 * 9 8 6 22 22 C 1.31626 * 121.64597 * 359.72190 * 21 9 8 23 23 C 1.50706 * 119.74154 * 180.02562 * 22 21 9 24 24 H 1.09000 * 109.47694 * 59.99999 * 1 2 3 25 25 H 1.09005 * 109.46809 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47412 * 299.99504 * 1 2 3 27 27 H 1.08999 * 109.47157 * 89.99920 * 7 6 5 28 28 H 1.08997 * 109.46817 * 329.99935 * 7 6 5 29 29 H 1.09001 * 109.46934 * 209.99955 * 7 6 5 30 30 H 1.07996 * 120.31678 * 179.72974 * 8 6 5 31 31 H 0.96997 * 119.99453 * 354.89272 * 10 9 8 32 32 H 0.96996 * 119.99909 * 180.02562 * 16 15 13 33 33 H 1.08997 * 109.47158 * 269.98236 * 23 22 21 34 34 H 1.08999 * 109.46934 * 29.97915 * 23 22 21 35 35 H 1.08997 * 109.47244 * 149.97780 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4018 2.2196 -0.0005 5 6 3.5363 1.2779 -0.0006 6 6 4.2477 1.3150 1.2086 7 6 3.5241 1.2773 2.5300 8 6 5.6138 1.3919 1.1605 9 6 6.2538 1.4196 -0.0774 10 7 7.6375 1.4922 -0.1300 11 6 8.2717 1.4156 -1.3167 12 8 7.6284 1.3763 -2.3491 13 6 9.7326 1.3798 -1.3639 14 1 10.3036 1.4144 -0.4477 15 6 10.3921 1.3008 -2.5977 16 7 9.7016 1.2595 -3.7060 17 14 12.2585 1.2544 -2.6579 18 1 12.7485 0.0671 -1.9125 19 1 12.7063 1.1715 -4.0713 20 1 12.8047 2.4883 -2.0377 21 7 5.5579 1.3833 -1.2056 22 6 4.2434 1.3148 -1.2044 23 6 3.4956 1.2753 -2.5122 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 3.4031 0.2419 2.8486 28 1 2.5436 1.7407 2.4207 29 1 4.1022 1.8219 3.2765 30 1 6.1903 1.4265 2.0730 31 1 8.1489 1.5980 0.6874 32 1 10.1581 1.2043 -4.5600 33 1 3.2615 2.2920 -2.8277 34 1 4.1135 0.7930 -3.2696 35 1 2.5710 0.7123 -2.3852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890491797.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:25 Heat of formation + Delta-G solvation = -81.550787 kcal Electronic energy + Delta-G solvation = -21242.769671 eV Core-core repulsion = 17820.356016 eV Total energy + Delta-G solvation = -3422.413655 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.75130 -39.59445 -37.39711 -36.26839 -33.99782 -33.95685 -32.50765 -30.93213 -28.36780 -27.75949 -27.10203 -26.42018 -23.40420 -21.40214 -21.06925 -19.66783 -17.94016 -17.67267 -16.90343 -16.62646 -16.08880 -15.62398 -15.14525 -14.51119 -14.22348 -13.97949 -13.47079 -13.30211 -13.10513 -12.99326 -12.95437 -12.56621 -12.33028 -12.25941 -11.97806 -11.73963 -11.65540 -11.33386 -11.07913 -10.81045 -10.67159 -10.54463 -10.38526 -9.64662 -9.11014 -8.97928 -8.91988 -7.56188 -7.43418 -6.34091 -4.83935 1.37970 1.67647 2.20547 2.85409 3.08131 3.12984 3.14985 3.87571 4.07777 4.17291 4.54080 4.72937 4.75925 4.98480 5.01506 5.07511 5.26138 5.39810 5.41196 5.51090 5.52682 5.66514 5.76441 5.81743 5.92077 5.95859 6.17449 6.27656 6.42735 6.49971 6.82867 7.26049 7.41887 7.78518 7.80067 8.03499 8.52981 8.82660 9.19355 10.39150 10.56211 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036137 B = 0.004060 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.637391 B = 6894.193358 C = 7450.876327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.353 6.353 3 C 0.537 3.463 4 O -0.505 6.505 5 C -0.247 4.247 6 C 0.029 3.971 7 C -0.119 4.119 8 C -0.248 4.248 9 C 0.421 3.579 10 N -0.663 5.663 11 C 0.526 3.474 12 O -0.504 6.504 13 C -0.539 4.539 14 H 0.072 0.928 15 C 0.086 3.914 16 N -0.757 5.757 17 Si 0.915 3.085 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.267 1.267 21 N -0.470 5.470 22 C 0.217 3.783 23 C -0.108 4.108 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.135 0.865 31 H 0.401 0.599 32 H 0.273 0.727 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.739 -2.433 9.617 15.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.270 6.270 3 C 0.380 3.620 4 O -0.393 6.393 5 C -0.254 4.254 6 C 0.021 3.979 7 C -0.176 4.176 8 C -0.272 4.272 9 C 0.185 3.815 10 N -0.304 5.304 11 C 0.330 3.670 12 O -0.379 6.379 13 C -0.574 4.574 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.385 5.385 17 Si 0.739 3.261 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.191 1.191 21 N -0.187 5.187 22 C 0.074 3.926 23 C -0.165 4.165 24 H 0.081 0.919 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.153 0.847 31 H 0.236 0.764 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.771 -2.162 7.787 14.278 hybrid contribution 0.589 0.069 1.282 1.412 sum -11.182 -2.093 9.069 14.548 Atomic orbital electron populations 1.23266 0.76928 1.03547 1.02446 1.86736 1.22839 1.33348 1.84052 1.21101 0.88817 0.81183 0.70866 1.90823 1.66887 1.36197 1.45344 1.19420 0.89286 1.21073 0.95575 1.19466 0.92948 0.91830 0.93628 1.20874 1.00106 1.03000 0.93581 1.20945 0.94086 1.14566 0.97633 1.19026 0.86820 0.87116 0.88536 1.44738 1.01687 1.70934 1.13086 1.18631 0.88880 0.78627 0.80860 1.90751 1.66645 1.49738 1.30794 1.20812 0.88949 1.53897 0.93792 0.91016 1.25723 1.00218 0.92660 0.94966 1.69970 1.36934 1.33355 0.98286 0.86315 0.82314 0.79551 0.77951 1.19140 1.20375 1.19144 1.68021 1.05379 1.17596 1.27669 1.21251 0.89281 0.88833 0.93228 1.20787 0.98583 1.03223 0.93949 0.91897 0.88188 0.92052 0.90137 0.91606 0.90434 0.84668 0.76404 0.91576 0.89954 0.89014 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.37 16 2 O -0.35 -4.89 10.58 -40.62 -0.43 -5.32 16 3 C 0.54 8.65 4.46 34.49 0.15 8.80 16 4 O -0.51 -8.92 16.90 -19.27 -0.33 -9.24 16 5 C -0.25 -4.36 5.77 -104.81 -0.60 -4.97 16 6 C 0.03 0.46 5.92 -104.31 -0.62 -0.16 16 7 C -0.12 -1.39 9.68 36.01 0.35 -1.04 16 8 C -0.25 -4.12 9.55 -39.64 -0.38 -4.50 16 9 C 0.42 8.96 7.41 -155.09 -1.15 7.81 16 10 N -0.66 -14.65 5.35 -12.78 -0.07 -14.72 16 11 C 0.53 14.53 7.70 -13.06 -0.10 14.43 16 12 O -0.50 -15.88 13.25 5.18 0.07 -15.81 16 13 C -0.54 -14.45 9.54 -35.67 -0.34 -14.79 16 14 H 0.07 1.72 7.85 -52.48 -0.41 1.30 16 15 C 0.09 2.29 5.50 -17.35 -0.10 2.19 16 16 N -0.76 -21.88 11.83 55.55 0.66 -21.22 16 17 Si 0.91 19.26 29.56 -169.99 -5.02 14.23 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 N -0.47 -11.03 7.75 -8.32 -0.06 -11.09 16 22 C 0.22 4.32 6.82 -82.15 -0.56 3.76 16 23 C -0.11 -1.84 9.79 36.01 0.35 -1.48 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.79 7.18 -51.93 -0.37 0.42 16 29 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 30 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.40 7.17 8.67 -40.82 -0.35 6.81 16 32 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 35 H 0.06 0.95 7.07 -51.93 -0.37 0.59 16 LS Contribution 313.29 15.07 4.72 4.72 Total: -1.00 -35.47 313.29 -6.41 -41.88 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -4.02 Total: 5.15 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -1.92 Total: 11.42 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.52 Total: -47.03 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.69 Total: -30.37 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.47 -6.41 -41.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890491797.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.667 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds