Wall clock time and date at job start Tue Mar 31 2020 01:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34747 * 116.99832 * 2 1 4 4 O 1.21507 * 119.99725 * 359.97438 * 3 2 1 5 5 C 1.47469 * 120.00333 * 180.02562 * 3 2 1 6 6 C 1.40341 * 120.48018 * 270.00059 * 5 3 2 7 7 C 1.50703 * 120.75967 * 359.97438 * 6 5 3 8 8 C 1.36909 * 118.48651 * 180.24760 * 6 5 3 9 9 C 1.39384 * 119.37536 * 359.46534 * 8 6 5 10 10 N 1.38657 * 119.53373 * 180.25052 * 9 8 6 11 11 C 1.34777 * 120.00129 * 174.88591 * 10 9 8 12 12 O 1.21706 * 119.99798 * 5.10701 * 11 10 9 13 13 C 1.46210 * 120.00188 * 185.09793 * 11 10 9 14 14 H 1.08010 * 119.99912 * 0.02562 * 13 11 10 15 15 C 1.40125 * 120.00460 * 180.02562 * 13 11 10 16 16 N 1.30639 * 119.99697 * 0.02562 * 15 13 11 17 17 Si 1.86791 * 120.00075 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47503 * 60.00103 * 17 15 13 19 19 H 1.48501 * 109.47118 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47407 * 300.00067 * 17 15 13 21 21 N 1.32607 * 120.93688 * 0.54993 * 9 8 6 22 22 C 1.31626 * 121.64597 * 359.72190 * 21 9 8 23 23 C 1.50706 * 119.74154 * 180.02562 * 22 21 9 24 24 H 1.09000 * 109.47694 * 59.99999 * 1 2 3 25 25 H 1.09005 * 109.46809 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47412 * 299.99504 * 1 2 3 27 27 H 1.08999 * 109.47157 * 89.99920 * 7 6 5 28 28 H 1.08997 * 109.46817 * 329.99935 * 7 6 5 29 29 H 1.09001 * 109.46934 * 209.99955 * 7 6 5 30 30 H 1.07996 * 120.31678 * 179.72974 * 8 6 5 31 31 H 0.96997 * 119.99453 * 354.89272 * 10 9 8 32 32 H 0.96996 * 119.99909 * 180.02562 * 16 15 13 33 33 H 1.08997 * 109.47158 * 269.98236 * 23 22 21 34 34 H 1.08999 * 109.46934 * 29.97915 * 23 22 21 35 35 H 1.08997 * 109.47244 * 149.97780 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4018 2.2196 -0.0005 5 6 3.5363 1.2779 -0.0006 6 6 4.2477 1.3150 1.2086 7 6 3.5241 1.2773 2.5300 8 6 5.6138 1.3919 1.1605 9 6 6.2538 1.4196 -0.0774 10 7 7.6375 1.4922 -0.1300 11 6 8.2717 1.4156 -1.3167 12 8 7.6284 1.3763 -2.3491 13 6 9.7326 1.3798 -1.3639 14 1 10.3036 1.4144 -0.4477 15 6 10.3921 1.3008 -2.5977 16 7 9.7016 1.2595 -3.7060 17 14 12.2585 1.2544 -2.6579 18 1 12.7485 0.0671 -1.9125 19 1 12.7063 1.1715 -4.0713 20 1 12.8047 2.4883 -2.0377 21 7 5.5579 1.3833 -1.2056 22 6 4.2434 1.3148 -1.2044 23 6 3.4956 1.2753 -2.5122 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 3.4031 0.2419 2.8486 28 1 2.5436 1.7407 2.4207 29 1 4.1022 1.8219 3.2765 30 1 6.1903 1.4265 2.0730 31 1 8.1489 1.5980 0.6874 32 1 10.1581 1.2043 -4.5600 33 1 3.2615 2.2920 -2.8277 34 1 4.1135 0.7930 -3.2696 35 1 2.5710 0.7123 -2.3852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890491797.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:24 Heat of formation + Delta-G solvation = -106.015160 kcal Electronic energy + Delta-G solvation = -21243.830526 eV Core-core repulsion = 17820.356016 eV Total energy + Delta-G solvation = -3423.474509 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.10252 -40.98669 -39.20492 -37.47733 -35.77093 -35.28627 -34.53982 -32.52527 -29.45527 -29.18419 -28.52061 -27.91001 -24.88824 -22.97388 -22.38986 -21.29564 -19.62165 -18.99301 -18.15528 -18.08814 -17.72350 -17.31358 -16.60164 -16.03441 -15.70357 -15.32600 -14.89064 -14.74533 -14.44627 -14.31195 -14.16805 -14.07185 -13.56118 -13.38301 -13.28685 -13.15475 -13.07230 -12.85628 -12.71497 -12.67983 -12.06938 -11.82408 -11.80909 -11.28440 -10.88545 -10.61266 -10.49499 -9.54375 -9.06137 -8.32607 -6.93308 -0.09013 0.31912 0.93593 1.41388 1.44690 1.56815 1.71358 2.19169 2.35980 2.55810 2.78626 3.36565 3.52937 3.64327 3.79225 4.00640 4.10339 4.30847 4.33938 4.35356 4.44646 4.53398 4.57821 4.68466 4.71946 4.75513 4.95148 5.09393 5.10568 5.25603 5.26819 5.45727 5.68448 6.04011 6.14828 6.58457 6.77890 6.89203 7.48333 8.41076 8.59663 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036137 B = 0.004060 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.637391 B = 6894.193358 C = 7450.876327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.356 6.356 3 C 0.547 3.453 4 O -0.523 6.523 5 C -0.245 4.245 6 C 0.029 3.971 7 C -0.114 4.114 8 C -0.226 4.226 9 C 0.386 3.614 10 N -0.661 5.661 11 C 0.514 3.486 12 O -0.559 6.559 13 C -0.564 4.564 14 H 0.097 0.903 15 C 0.028 3.972 16 N -0.814 5.814 17 Si 1.003 2.997 18 H -0.252 1.252 19 H -0.277 1.277 20 H -0.253 1.253 21 N -0.526 5.526 22 C 0.188 3.812 23 C -0.103 4.103 24 H 0.064 0.936 25 H 0.134 0.866 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.178 0.822 31 H 0.420 0.580 32 H 0.277 0.723 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.954 -2.942 12.456 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.272 6.272 3 C 0.390 3.610 4 O -0.413 6.413 5 C -0.251 4.251 6 C 0.021 3.979 7 C -0.170 4.170 8 C -0.250 4.250 9 C 0.152 3.848 10 N -0.305 5.305 11 C 0.318 3.682 12 O -0.438 6.438 13 C -0.600 4.600 14 H 0.115 0.885 15 C -0.188 4.188 16 N -0.443 5.443 17 Si 0.822 3.178 18 H -0.176 1.176 19 H -0.201 1.201 20 H -0.177 1.177 21 N -0.243 5.243 22 C 0.047 3.953 23 C -0.160 4.160 24 H 0.083 0.917 25 H 0.152 0.848 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.195 0.805 31 H 0.258 0.742 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.044 -2.684 10.694 16.329 hybrid contribution 0.414 0.192 0.491 0.670 sum -11.630 -2.491 11.184 16.327 Atomic orbital electron populations 1.23682 0.74204 1.06052 1.03045 1.86705 1.25412 1.31743 1.83367 1.20716 0.88081 0.81617 0.70562 1.90820 1.67037 1.36954 1.46465 1.19723 0.90617 1.19168 0.95625 1.20050 0.92855 0.89953 0.95046 1.20982 0.99741 1.04861 0.91440 1.21261 0.94631 1.11987 0.97131 1.19361 0.86360 0.89173 0.89934 1.44108 1.02514 1.71657 1.12251 1.19000 0.89628 0.77916 0.81623 1.90705 1.67903 1.52028 1.33172 1.21403 0.89294 1.54012 0.95258 0.88469 1.27019 1.06453 0.91224 0.94106 1.70158 1.39828 1.35031 0.99302 0.84985 0.74264 0.80394 0.78164 1.17628 1.20139 1.17674 1.67818 1.07311 1.19077 1.30061 1.21559 0.88653 0.90013 0.95056 1.20790 0.98893 1.03635 0.92728 0.91722 0.84778 0.91121 0.87884 0.91795 0.87659 0.80506 0.74244 0.91297 0.89559 0.90868 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -9.05 10.58 -56.58 -0.60 -9.65 16 3 C 0.55 16.73 4.46 70.25 0.31 17.05 16 4 O -0.52 -17.71 16.90 19.81 0.33 -17.38 16 5 C -0.25 -8.46 5.77 -19.99 -0.12 -8.57 16 6 C 0.03 0.84 5.92 -19.66 -0.12 0.72 16 7 C -0.11 -2.19 9.68 71.24 0.69 -1.50 16 8 C -0.23 -7.09 9.55 22.23 0.21 -6.88 16 9 C 0.39 16.68 7.41 133.18 0.99 17.67 16 10 N -0.66 -29.80 5.35 -312.57 -1.67 -31.48 16 11 C 0.51 29.53 7.70 86.31 0.66 30.19 16 12 O -0.56 -37.31 13.25 -4.37 -0.06 -37.37 16 13 C -0.56 -30.78 9.54 24.80 0.24 -30.54 16 14 H 0.10 4.59 7.85 -2.91 -0.02 4.57 16 15 C 0.03 1.52 5.50 85.33 0.47 1.99 16 16 N -0.81 -49.03 11.83 21.85 0.26 -48.77 16 17 Si 1.00 39.51 29.56 68.60 2.03 41.54 16 18 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 19 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 21 N -0.53 -25.79 7.75 -180.24 -1.40 -27.19 16 22 C 0.19 7.72 6.82 42.94 0.29 8.01 16 23 C -0.10 -3.66 9.79 71.24 0.70 -2.97 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.13 1.26 8.14 -2.38 -0.02 1.25 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 27 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.30 7.18 -2.39 -0.02 1.28 16 29 H 0.10 1.49 8.10 -2.39 -0.02 1.47 16 30 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 31 H 0.42 14.85 8.67 -92.71 -0.80 14.05 16 32 H 0.28 15.16 8.29 -92.71 -0.77 14.39 16 33 H 0.09 2.90 8.14 -2.39 -0.02 2.89 16 34 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.09 2.61 7.07 -2.39 -0.02 2.60 16 Total: -1.00 -82.62 313.29 4.75 -77.87 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.33 Total: 25.69 kcal Atomic # 6 Polarization: 21.21 SS G_CDS: 5.53 Total: 26.74 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -2.81 Total: -107.44 kcal Atomic # 8 Polarization: -64.08 SS G_CDS: -0.32 Total: -64.40 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -82.62 4.75 -77.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890491797.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.148 kcal (2) G-P(sol) polarization free energy of solvation -82.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds