Wall clock time and date at job start Mon Mar 30 2020 23:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99767 * 2 1 4 4 H 1.48503 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47067 * 299.99463 * 3 2 1 6 6 H 1.48494 * 109.47314 * 60.00118 * 3 2 1 7 7 C 1.37880 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99458 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47005 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47005 * 180.02562 * 10 9 7 12 12 O 1.20820 * 120.00152 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99884 * 179.97438 * 11 10 9 14 14 C 1.45194 * 117.00035 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47032 * 179.97438 * 14 13 11 16 16 C 1.32569 * 120.00183 * 134.99960 * 15 14 13 17 17 C 1.47810 * 120.00010 * 179.97438 * 16 15 14 18 18 C 1.39565 * 120.12338 * 180.02562 * 17 16 15 19 19 C 1.37971 * 119.90294 * 179.97438 * 18 17 16 20 20 C 1.38324 * 120.16714 * 359.96988 * 19 18 17 21 21 C 1.38539 * 120.26678 * 0.05327 * 20 19 18 22 22 F 1.35093 * 119.95843 * 179.97438 * 21 20 19 23 23 C 1.38224 * 120.08841 * 359.95128 * 21 20 19 24 24 H 0.97002 * 119.99888 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47536 * 59.99676 * 9 7 2 26 26 H 1.09000 * 109.47306 * 299.99588 * 9 7 2 27 27 H 1.08997 * 109.47232 * 59.99497 * 10 9 7 28 28 H 1.09000 * 109.46758 * 299.99931 * 10 9 7 29 29 H 1.09001 * 109.46924 * 60.00399 * 14 13 11 30 30 H 1.09002 * 109.47416 * 300.00009 * 14 13 11 31 31 H 1.08002 * 120.00058 * 315.00068 * 15 14 13 32 32 H 1.08002 * 119.99758 * 0.02562 * 16 15 14 33 33 H 1.08000 * 120.04970 * 359.70018 * 18 17 16 34 34 H 1.08001 * 119.91389 * 179.97438 * 19 18 17 35 35 H 1.08003 * 119.86826 * 180.02562 * 20 19 18 36 36 H 1.08002 * 120.09105 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2834 -4.9672 0.0000 13 8 2.1628 -6.1297 -0.0007 14 6 1.3720 -7.3474 -0.0007 15 6 2.2900 -8.5425 -0.0021 16 6 2.0507 -9.5632 0.8093 17 6 2.9508 -10.7356 0.8075 18 6 2.7009 -11.8117 1.6604 19 6 3.5438 -12.9040 1.6546 20 6 4.6352 -12.9354 0.8053 21 6 4.8900 -11.8708 -0.0438 22 9 5.9580 -11.9077 -0.8703 23 6 4.0528 -10.7710 -0.0468 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5568 0.8903 27 1 2.8719 -3.6044 0.8904 28 1 2.8718 -3.6043 -0.8895 29 1 0.7428 -7.3720 -0.8905 30 1 0.7435 -7.3725 0.8895 31 1 3.1429 -8.5675 -0.6642 32 1 1.1975 -9.5383 1.4711 33 1 1.8516 -11.7876 2.3270 34 1 3.3509 -13.7367 2.3147 35 1 5.2916 -13.7931 0.8045 36 1 4.2511 -9.9412 -0.7091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893549152.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:57 Heat of formation + Delta-G solvation = -107.074029 kcal Electronic energy + Delta-G solvation = -19316.835885 eV Core-core repulsion = 15873.395497 eV Total energy + Delta-G solvation = -3443.440387 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.22053 -40.01542 -39.45158 -36.51220 -34.81740 -33.59959 -31.32844 -30.97288 -30.71562 -27.01174 -25.60906 -23.58529 -22.61293 -21.93672 -20.11542 -19.64920 -18.01239 -17.31918 -16.67014 -16.47513 -16.32202 -16.17819 -15.91865 -15.49825 -14.65837 -14.46152 -14.26220 -13.98408 -13.67994 -13.03382 -13.00919 -12.65972 -12.37416 -12.26037 -12.17972 -11.51044 -11.48475 -11.19384 -10.99172 -10.80725 -10.63354 -10.32865 -10.06784 -9.96281 -9.59133 -9.23638 -9.17843 -8.57056 -8.39416 -6.03004 -4.07817 0.36104 0.79891 1.94923 2.78555 3.12500 3.30106 3.37088 3.38708 3.41759 3.83409 4.23507 4.29715 4.43765 4.56757 4.71028 4.80207 4.88599 5.03994 5.20231 5.29142 5.32589 5.42092 5.57163 5.60823 5.69170 5.78412 5.92673 6.10253 6.16162 6.22431 6.33727 6.48131 6.61494 6.89667 7.65166 7.71454 7.96458 8.22628 8.38204 8.99523 9.56397 11.08053 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036650 B = 0.002284 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.790697 B =12257.179183 C =12763.743470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.103 4.103 11 C 0.457 3.543 12 O -0.505 6.505 13 O -0.363 6.363 14 C 0.090 3.910 15 C -0.123 4.123 16 C -0.118 4.118 17 C -0.020 4.020 18 C -0.120 4.120 19 C -0.089 4.089 20 C -0.158 4.158 21 C 0.102 3.898 22 F -0.139 7.139 23 C -0.152 4.152 24 H 0.261 0.739 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.317 -26.556 2.257 27.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.141 4.141 11 C 0.301 3.699 12 O -0.392 6.392 13 O -0.282 6.282 14 C 0.016 3.984 15 C -0.141 4.141 16 C -0.136 4.136 17 C -0.020 4.020 18 C -0.138 4.138 19 C -0.107 4.107 20 C -0.177 4.177 21 C 0.083 3.917 22 F -0.118 7.118 23 C -0.170 4.170 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.822 -26.468 2.224 27.423 hybrid contribution 0.470 0.788 -0.186 0.936 sum 7.292 -25.680 2.038 26.773 Atomic orbital electron populations 1.70003 1.06100 1.26667 1.50023 1.25031 0.94870 0.99381 0.95124 0.86478 0.80026 0.83520 0.77620 1.19639 1.20961 1.20964 1.21194 0.93123 0.90611 1.51670 0.92227 1.19030 0.93241 0.89306 0.98911 1.21779 1.00688 0.87513 1.04085 1.24812 0.87961 0.85585 0.71552 1.90638 1.15891 1.87618 1.45012 1.86591 1.41933 1.14701 1.84926 1.21827 0.92448 0.80961 1.03121 1.23214 0.99441 0.93260 0.98154 1.21577 0.99249 0.93144 0.99659 1.18824 0.93846 0.94257 0.95087 1.21360 1.00241 0.93047 0.99177 1.20962 0.93602 0.98359 0.97808 1.21217 1.00099 0.98641 0.97766 1.17600 0.86040 0.95992 0.92082 1.91515 1.53495 1.96717 1.70061 1.21361 0.95548 0.98438 1.01690 0.92892 0.95574 0.95569 0.88877 0.88882 0.89962 0.90586 0.85689 0.85369 0.84921 0.84794 0.84769 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 10 C -0.10 -2.09 5.75 -27.88 -0.16 -2.25 16 11 C 0.46 8.89 7.96 36.01 0.29 9.18 16 12 O -0.51 -11.34 15.73 -18.75 -0.29 -11.63 16 13 O -0.36 -5.86 10.20 -39.26 -0.40 -6.26 16 14 C 0.09 1.15 5.88 36.01 0.21 1.36 16 15 C -0.12 -1.24 9.32 -36.21 -0.34 -1.58 16 16 C -0.12 -1.04 9.51 -37.57 -0.36 -1.40 16 17 C -0.02 -0.17 5.87 -105.02 -0.62 -0.79 16 18 C -0.12 -0.85 9.78 -39.18 -0.38 -1.24 16 19 C -0.09 -0.57 10.03 -39.65 -0.40 -0.97 16 20 C -0.16 -1.18 10.02 -39.44 -0.40 -1.57 16 21 C 0.10 0.95 7.29 -39.48 -0.29 0.66 16 22 F -0.14 -1.43 17.26 2.25 0.04 -1.39 16 23 C -0.15 -1.40 9.38 -39.12 -0.37 -1.77 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 29 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 30 H 0.08 0.94 7.88 -51.93 -0.41 0.53 16 31 H 0.13 1.18 6.04 -52.49 -0.32 0.86 16 32 H 0.13 0.94 7.92 -52.49 -0.42 0.52 16 33 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 35 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.14 1.19 6.17 -52.49 -0.32 0.86 16 LS Contribution 325.81 15.07 4.91 4.91 Total: -1.00 -32.54 325.81 -7.75 -40.29 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.38 Total: -2.99 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -3.33 Total: -13.10 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.70 Total: -17.89 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.54 -7.75 -40.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893549152.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.782 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds