Wall clock time and date at job start Mon Mar 30 2020 23:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99767 * 2 1 4 4 H 1.48503 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47067 * 299.99463 * 3 2 1 6 6 H 1.48494 * 109.47314 * 60.00118 * 3 2 1 7 7 C 1.37880 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99458 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47005 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47005 * 180.02562 * 10 9 7 12 12 O 1.20820 * 120.00152 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99884 * 179.97438 * 11 10 9 14 14 C 1.45194 * 117.00035 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47032 * 179.97438 * 14 13 11 16 16 C 1.32569 * 120.00183 * 134.99960 * 15 14 13 17 17 C 1.47810 * 120.00010 * 179.97438 * 16 15 14 18 18 C 1.39565 * 120.12338 * 180.02562 * 17 16 15 19 19 C 1.37971 * 119.90294 * 179.97438 * 18 17 16 20 20 C 1.38324 * 120.16714 * 359.96988 * 19 18 17 21 21 C 1.38539 * 120.26678 * 0.05327 * 20 19 18 22 22 F 1.35093 * 119.95843 * 179.97438 * 21 20 19 23 23 C 1.38224 * 120.08841 * 359.95128 * 21 20 19 24 24 H 0.97002 * 119.99888 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47536 * 59.99676 * 9 7 2 26 26 H 1.09000 * 109.47306 * 299.99588 * 9 7 2 27 27 H 1.08997 * 109.47232 * 59.99497 * 10 9 7 28 28 H 1.09000 * 109.46758 * 299.99931 * 10 9 7 29 29 H 1.09001 * 109.46924 * 60.00399 * 14 13 11 30 30 H 1.09002 * 109.47416 * 300.00009 * 14 13 11 31 31 H 1.08002 * 120.00058 * 315.00068 * 15 14 13 32 32 H 1.08002 * 119.99758 * 0.02562 * 16 15 14 33 33 H 1.08000 * 120.04970 * 359.70018 * 18 17 16 34 34 H 1.08001 * 119.91389 * 179.97438 * 19 18 17 35 35 H 1.08003 * 119.86826 * 180.02562 * 20 19 18 36 36 H 1.08002 * 120.09105 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2834 -4.9672 0.0000 13 8 2.1628 -6.1297 -0.0007 14 6 1.3720 -7.3474 -0.0007 15 6 2.2900 -8.5425 -0.0021 16 6 2.0507 -9.5632 0.8093 17 6 2.9508 -10.7356 0.8075 18 6 2.7009 -11.8117 1.6604 19 6 3.5438 -12.9040 1.6546 20 6 4.6352 -12.9354 0.8053 21 6 4.8900 -11.8708 -0.0438 22 9 5.9580 -11.9077 -0.8703 23 6 4.0528 -10.7710 -0.0468 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5568 0.8903 27 1 2.8719 -3.6044 0.8904 28 1 2.8718 -3.6043 -0.8895 29 1 0.7428 -7.3720 -0.8905 30 1 0.7435 -7.3725 0.8895 31 1 3.1429 -8.5675 -0.6642 32 1 1.1975 -9.5383 1.4711 33 1 1.8516 -11.7876 2.3270 34 1 3.3509 -13.7367 2.3147 35 1 5.2916 -13.7931 0.8045 36 1 4.2511 -9.9412 -0.7091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893549152.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:57 Heat of formation + Delta-G solvation = -123.880094 kcal Electronic energy + Delta-G solvation = -19317.564650 eV Core-core repulsion = 15873.395497 eV Total energy + Delta-G solvation = -3444.169153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.93257 -41.48896 -40.07390 -37.88247 -35.66114 -35.64909 -33.17207 -31.68110 -31.48968 -28.43284 -27.07876 -24.41287 -23.93533 -22.99696 -21.52522 -20.60586 -19.11048 -18.68586 -18.07112 -17.64265 -17.29548 -17.13560 -16.81873 -16.63196 -16.47227 -15.68258 -15.12290 -14.87352 -14.69601 -14.31094 -14.14545 -13.88263 -13.70745 -13.55120 -13.20079 -12.87259 -12.84444 -12.48663 -12.28781 -12.10847 -12.01794 -11.90784 -11.74939 -11.44083 -11.26744 -11.12675 -10.58728 -9.85225 -9.25068 -8.20296 -6.33811 -0.29469 0.20259 1.19263 1.23008 1.43877 1.44494 1.58124 1.90229 2.43419 2.75256 3.13639 3.19987 3.47348 3.69776 3.93302 3.99534 4.06076 4.16429 4.21229 4.30558 4.41300 4.44082 4.46237 4.50981 4.79036 4.92135 5.01940 5.11389 5.20357 5.31316 5.38503 5.47233 5.49309 5.55501 5.65654 5.80834 5.90441 6.13300 6.78340 6.86346 7.36428 8.92556 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036650 B = 0.002284 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.790697 B =12257.179183 C =12763.743470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.975 3.025 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.037 3.963 10 C -0.095 4.095 11 C 0.467 3.533 12 O -0.543 6.543 13 O -0.355 6.355 14 C 0.087 3.913 15 C -0.144 4.144 16 C -0.096 4.096 17 C -0.040 4.040 18 C -0.115 4.115 19 C -0.087 4.087 20 C -0.156 4.156 21 C 0.076 3.924 22 F -0.152 7.152 23 C -0.163 4.163 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.009 1.009 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.128 0.872 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.167 0.833 35 H 0.152 0.848 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.850 -27.889 3.252 29.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.798 3.202 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.095 0.905 9 C 0.000 4.000 10 C -0.132 4.132 11 C 0.312 3.688 12 O -0.433 6.433 13 O -0.273 6.273 14 C 0.014 3.986 15 C -0.162 4.162 16 C -0.113 4.113 17 C -0.040 4.040 18 C -0.133 4.133 19 C -0.104 4.104 20 C -0.174 4.174 21 C 0.057 3.943 22 F -0.130 7.130 23 C -0.182 4.182 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.146 0.854 32 H 0.163 0.837 33 H 0.175 0.825 34 H 0.184 0.816 35 H 0.170 0.830 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.392 -27.834 3.217 29.249 hybrid contribution -0.018 0.999 -0.449 1.095 sum 8.374 -26.836 2.767 28.248 Atomic orbital electron populations 1.70163 1.08201 1.27873 1.51324 1.26106 0.95756 1.03880 0.94564 0.85257 0.79271 0.78065 0.77564 1.17739 1.20627 1.20598 1.21677 0.94113 0.91298 1.50971 0.90467 1.18810 0.93703 0.91947 0.95523 1.21526 0.99365 0.86070 1.06280 1.24484 0.87148 0.86446 0.70728 1.90628 1.17429 1.88286 1.46953 1.86544 1.41851 1.14829 1.84046 1.22078 0.92966 0.80140 1.03379 1.23009 1.00060 0.92913 1.00179 1.21776 0.98978 0.92367 0.98220 1.18924 0.93989 0.94997 0.96123 1.21722 1.00754 0.92361 0.98442 1.21360 0.92578 0.98980 0.97511 1.21545 1.00549 0.98433 0.96902 1.17884 0.86291 0.97035 0.93113 1.91479 1.54108 1.96841 1.70612 1.21470 0.96053 0.98603 1.02062 0.92745 0.99128 0.99078 0.86596 0.86618 0.90100 0.90194 0.85391 0.83656 0.82526 0.81578 0.82987 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.14 13.29 21.45 0.28 -57.86 16 2 C -0.01 -0.31 5.46 84.66 0.46 0.16 16 3 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 4 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.54 -30.31 9.11 25.60 0.23 -30.07 16 8 H 0.08 3.95 7.74 -2.91 -0.02 3.92 16 9 C 0.04 2.02 4.26 29.85 0.13 2.15 16 10 C -0.10 -3.82 5.75 29.85 0.17 -3.65 16 11 C 0.47 18.23 7.96 71.24 0.57 18.80 16 12 O -0.54 -25.12 15.73 21.98 0.35 -24.77 16 13 O -0.36 -11.25 10.20 -51.44 -0.52 -11.78 16 14 C 0.09 2.20 5.88 71.24 0.42 2.61 16 15 C -0.14 -2.79 9.32 24.53 0.23 -2.57 16 16 C -0.10 -1.52 9.51 23.65 0.22 -1.29 16 17 C -0.04 -0.63 5.87 -20.12 -0.12 -0.75 16 18 C -0.11 -1.29 9.78 22.53 0.22 -1.07 16 19 C -0.09 -0.82 10.03 22.23 0.22 -0.60 16 20 C -0.16 -1.98 10.02 22.36 0.22 -1.76 16 21 C 0.08 1.35 7.29 22.34 0.16 1.51 16 22 F -0.15 -3.12 17.26 44.97 0.78 -2.35 16 23 C -0.16 -2.91 9.38 22.57 0.21 -2.70 16 24 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 25 H -0.01 -0.59 8.10 -2.39 -0.02 -0.61 16 26 H -0.01 -0.56 8.10 -2.39 -0.02 -0.58 16 27 H 0.12 4.13 8.14 -2.39 -0.02 4.12 16 28 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 29 H 0.08 2.04 8.13 -2.39 -0.02 2.02 16 30 H 0.08 1.94 7.88 -2.39 -0.02 1.92 16 31 H 0.13 2.38 6.04 -2.91 -0.02 2.36 16 32 H 0.15 1.76 7.92 -2.91 -0.02 1.74 16 33 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 35 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.14 2.37 6.17 -2.91 -0.02 2.35 16 Total: -1.00 -72.11 325.81 7.35 -64.76 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 1.08 Total: 5.43 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 3.36 Total: -19.21 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.28 Total: -57.86 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.18 Total: -36.55 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.78 Total: -2.35 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -72.11 7.35 -64.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893549152.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.123 kcal (2) G-P(sol) polarization free energy of solvation -72.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds