Wall clock time and date at job start Mon Mar 30 2020 23:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48504 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46970 * 299.99717 * 3 2 1 6 6 H 1.48497 * 109.47568 * 59.99472 * 3 2 1 7 7 C 1.37873 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99942 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46879 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46794 * 180.02562 * 10 9 7 12 12 O 1.20822 * 120.00020 * 359.97438 * 11 10 9 13 13 O 1.34227 * 119.99689 * 180.02562 * 11 10 9 14 14 C 1.45199 * 116.99850 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47318 * 179.97438 * 14 13 11 16 16 C 1.32562 * 120.00071 * 135.99739 * 15 14 13 17 17 C 1.47811 * 120.00187 * 8.06692 * 16 15 14 18 18 C 1.39568 * 120.13342 * 215.23842 * 17 16 15 19 19 C 1.37959 * 119.90965 * 180.24965 * 18 17 16 20 20 C 1.38327 * 120.17012 * 359.74825 * 19 18 17 21 21 C 1.38544 * 120.25823 * 359.97438 * 20 19 18 22 22 F 1.35107 * 119.95393 * 179.97438 * 21 20 19 23 23 C 1.38220 * 120.09208 * 0.02562 * 21 20 19 24 24 H 0.97004 * 120.00779 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46911 * 60.00586 * 9 7 2 26 26 H 1.08998 * 109.47357 * 300.00504 * 9 7 2 27 27 H 1.08994 * 109.47083 * 60.00573 * 10 9 7 28 28 H 1.09001 * 109.47390 * 299.99856 * 10 9 7 29 29 H 1.09004 * 109.47095 * 59.99702 * 14 13 11 30 30 H 1.08997 * 109.47066 * 299.99717 * 14 13 11 31 31 H 1.08001 * 120.00196 * 316.00427 * 15 14 13 32 32 H 1.08009 * 120.00118 * 188.06630 * 16 15 14 33 33 H 1.08004 * 120.04157 * 359.97438 * 18 17 16 34 34 H 1.08002 * 119.91755 * 179.72248 * 19 18 17 35 35 H 1.07999 * 119.87068 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.08501 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4919 -4.9672 0.0033 12 8 0.2837 -4.9672 0.0033 13 8 2.1632 -6.1295 0.0047 14 6 1.3724 -7.3473 0.0046 15 6 2.2904 -8.5424 0.0057 16 6 2.0388 -9.5708 0.8034 17 6 0.7691 -9.6273 1.5581 18 6 0.7402 -10.1778 2.8403 19 6 -0.4484 -10.2329 3.5386 20 6 -1.6103 -9.7393 2.9733 21 6 -1.5885 -9.1862 1.7033 22 9 -2.7272 -8.7064 1.1568 23 6 -0.4037 -9.1255 0.9941 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8919 27 1 2.8720 -3.6034 0.8927 28 1 2.8721 -3.6050 -0.8873 29 1 0.7445 -7.3727 -0.8861 30 1 0.7427 -7.3717 0.8939 31 1 3.1535 -8.5610 -0.6433 32 1 2.7614 -10.3674 0.9018 33 1 1.6462 -10.5641 3.2835 34 1 -0.4718 -10.6630 4.5291 35 1 -2.5382 -9.7853 3.5241 36 1 -0.3869 -8.6946 0.0038 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893549153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:00 Heat of formation + Delta-G solvation = -99.188359 kcal Electronic energy + Delta-G solvation = -20183.517719 eV Core-core repulsion = 16740.419280 eV Total energy + Delta-G solvation = -3443.098439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.01874 -40.11031 -39.38155 -36.47889 -34.83031 -33.57605 -31.19343 -30.89618 -30.25674 -27.29759 -25.67243 -23.18129 -22.85091 -21.99991 -19.98816 -19.56551 -17.56925 -17.26036 -16.61973 -16.47194 -16.21593 -16.13183 -15.70486 -15.46440 -14.71170 -14.47954 -14.41056 -13.82274 -13.49432 -13.15088 -12.64375 -12.57147 -12.32127 -12.21689 -12.10448 -11.83580 -11.23411 -11.05516 -10.97285 -10.67023 -10.61964 -10.07640 -9.99373 -9.89783 -9.55665 -9.16168 -9.07445 -8.61300 -8.37694 -6.01028 -4.06018 0.54095 0.92270 1.88572 2.82921 3.18590 3.31170 3.38230 3.40832 3.43490 3.98679 4.33984 4.44629 4.47339 4.68422 4.73144 4.81919 4.99680 5.13416 5.20622 5.34398 5.43342 5.50396 5.59392 5.75074 5.84152 5.92706 5.97861 6.12453 6.17594 6.19523 6.37538 6.60206 6.65189 6.93542 7.67262 7.73919 7.98538 8.25677 8.41400 9.01338 9.58108 11.10001 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024675 B = 0.003188 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.467537 B = 8781.078996 C = 9391.417223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.102 4.102 11 C 0.456 3.544 12 O -0.504 6.504 13 O -0.364 6.364 14 C 0.077 3.923 15 C -0.126 4.126 16 C -0.117 4.117 17 C -0.034 4.034 18 C -0.119 4.119 19 C -0.091 4.091 20 C -0.154 4.154 21 C 0.104 3.896 22 F -0.136 7.136 23 C -0.151 4.151 24 H 0.261 0.739 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.782 -23.756 4.382 24.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.140 4.140 11 C 0.299 3.701 12 O -0.390 6.390 13 O -0.282 6.282 14 C 0.004 3.996 15 C -0.144 4.144 16 C -0.135 4.135 17 C -0.034 4.034 18 C -0.137 4.137 19 C -0.109 4.109 20 C -0.173 4.173 21 C 0.085 3.915 22 F -0.114 7.114 23 C -0.169 4.169 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.191 -23.645 4.359 24.143 hybrid contribution 0.020 0.937 -0.137 0.948 sum 2.210 -22.707 4.222 23.202 Atomic orbital electron populations 1.70003 1.06099 1.26655 1.49996 1.25026 0.94854 0.99354 0.95132 0.86486 0.80022 0.83558 0.77616 1.19638 1.20973 1.20960 1.21191 0.93105 0.90617 1.51693 0.92240 1.19032 0.93246 0.89301 0.98927 1.21771 1.00665 0.87540 1.04017 1.24810 0.87999 0.85603 0.71677 1.90645 1.15873 1.87616 1.44876 1.86562 1.42066 1.14720 1.84889 1.22399 0.92847 0.81425 1.02934 1.23142 1.00424 0.93091 0.97700 1.21634 0.95303 1.00147 0.96382 1.18916 0.92797 0.97388 0.94311 1.21318 0.98471 1.00082 0.93800 1.20960 0.91621 0.98346 0.99988 1.21251 1.00399 1.01272 0.94392 1.17619 0.82336 0.98503 0.93063 1.91542 1.48360 1.85846 1.85654 1.21556 0.91319 1.02186 1.01855 0.92895 0.95557 0.95584 0.88935 0.88917 0.90439 0.89819 0.84959 0.84671 0.84973 0.84786 0.84637 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 10 C -0.10 -2.13 5.75 -27.88 -0.16 -2.29 16 11 C 0.46 9.21 7.96 36.01 0.29 9.50 16 12 O -0.50 -11.78 15.73 -18.75 -0.29 -12.08 16 13 O -0.36 -6.14 10.20 -39.25 -0.40 -6.54 16 14 C 0.08 1.08 4.05 36.00 0.15 1.22 16 15 C -0.13 -1.29 9.85 -36.22 -0.36 -1.64 16 16 C -0.12 -1.03 9.81 -37.58 -0.37 -1.39 16 17 C -0.03 -0.34 5.19 -105.02 -0.54 -0.89 16 18 C -0.12 -1.01 9.78 -39.19 -0.38 -1.39 16 19 C -0.09 -0.75 10.03 -39.65 -0.40 -1.14 16 20 C -0.15 -1.52 10.02 -39.44 -0.40 -1.91 16 21 C 0.10 1.27 7.29 -39.48 -0.29 0.98 16 22 F -0.14 -1.88 17.26 2.25 0.04 -1.84 16 23 C -0.15 -1.77 7.39 -39.12 -0.29 -2.06 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 26 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 27 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 28 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 29 H 0.08 1.06 7.51 -51.93 -0.39 0.67 16 30 H 0.08 1.25 5.28 -51.93 -0.27 0.98 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 33 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.14 1.64 5.79 -52.49 -0.30 1.34 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -33.32 320.69 -7.70 -41.02 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -4.31 Total: -1.57 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -3.28 Total: -13.87 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.70 Total: -18.62 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.32 -7.70 -41.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893549153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.167 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds