Wall clock time and date at job start Mon Mar 30 2020 23:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48504 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46970 * 299.99717 * 3 2 1 6 6 H 1.48497 * 109.47568 * 59.99472 * 3 2 1 7 7 C 1.37873 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99942 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46879 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46794 * 180.02562 * 10 9 7 12 12 O 1.20822 * 120.00020 * 359.97438 * 11 10 9 13 13 O 1.34227 * 119.99689 * 180.02562 * 11 10 9 14 14 C 1.45199 * 116.99850 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47318 * 179.97438 * 14 13 11 16 16 C 1.32562 * 120.00071 * 135.99739 * 15 14 13 17 17 C 1.47811 * 120.00187 * 8.06692 * 16 15 14 18 18 C 1.39568 * 120.13342 * 215.23842 * 17 16 15 19 19 C 1.37959 * 119.90965 * 180.24965 * 18 17 16 20 20 C 1.38327 * 120.17012 * 359.74825 * 19 18 17 21 21 C 1.38544 * 120.25823 * 359.97438 * 20 19 18 22 22 F 1.35107 * 119.95393 * 179.97438 * 21 20 19 23 23 C 1.38220 * 120.09208 * 0.02562 * 21 20 19 24 24 H 0.97004 * 120.00779 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46911 * 60.00586 * 9 7 2 26 26 H 1.08998 * 109.47357 * 300.00504 * 9 7 2 27 27 H 1.08994 * 109.47083 * 60.00573 * 10 9 7 28 28 H 1.09001 * 109.47390 * 299.99856 * 10 9 7 29 29 H 1.09004 * 109.47095 * 59.99702 * 14 13 11 30 30 H 1.08997 * 109.47066 * 299.99717 * 14 13 11 31 31 H 1.08001 * 120.00196 * 316.00427 * 15 14 13 32 32 H 1.08009 * 120.00118 * 188.06630 * 16 15 14 33 33 H 1.08004 * 120.04157 * 359.97438 * 18 17 16 34 34 H 1.08002 * 119.91755 * 179.72248 * 19 18 17 35 35 H 1.07999 * 119.87068 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.08501 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4919 -4.9672 0.0033 12 8 0.2837 -4.9672 0.0033 13 8 2.1632 -6.1295 0.0047 14 6 1.3724 -7.3473 0.0046 15 6 2.2904 -8.5424 0.0057 16 6 2.0388 -9.5708 0.8034 17 6 0.7691 -9.6273 1.5581 18 6 0.7402 -10.1778 2.8403 19 6 -0.4484 -10.2329 3.5386 20 6 -1.6103 -9.7393 2.9733 21 6 -1.5885 -9.1862 1.7033 22 9 -2.7272 -8.7064 1.1568 23 6 -0.4037 -9.1255 0.9941 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8919 27 1 2.8720 -3.6034 0.8927 28 1 2.8721 -3.6050 -0.8873 29 1 0.7445 -7.3727 -0.8861 30 1 0.7427 -7.3717 0.8939 31 1 3.1535 -8.5610 -0.6433 32 1 2.7614 -10.3674 0.9018 33 1 1.6462 -10.5641 3.2835 34 1 -0.4718 -10.6630 4.5291 35 1 -2.5382 -9.7853 3.5241 36 1 -0.3869 -8.6946 0.0038 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893549153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:59 Heat of formation + Delta-G solvation = -117.408665 kcal Electronic energy + Delta-G solvation = -20184.307811 eV Core-core repulsion = 16740.419280 eV Total energy + Delta-G solvation = -3443.888531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.99933 -41.57273 -40.25808 -37.89113 -35.77198 -35.66672 -33.17363 -31.67882 -31.11950 -28.65785 -27.35556 -24.41070 -23.70907 -23.48346 -21.52550 -20.52962 -19.12866 -18.52436 -17.98384 -17.83016 -17.26156 -17.14503 -16.87439 -16.69548 -16.47416 -15.88470 -15.37738 -14.97494 -14.61350 -14.30321 -14.27039 -13.88140 -13.69675 -13.38088 -13.26119 -12.93116 -12.86389 -12.63184 -12.47035 -12.10148 -12.01788 -11.77960 -11.75306 -11.46595 -11.27084 -10.84407 -10.59958 -9.88858 -9.38779 -8.20860 -6.35124 -0.22789 0.13928 1.06163 1.19728 1.43303 1.44416 1.58101 1.89273 2.42941 2.63022 3.13000 3.18733 3.54664 3.70547 3.78411 3.96066 3.99692 4.08190 4.14441 4.21242 4.33520 4.43511 4.45008 4.68547 4.78083 4.89023 5.01256 5.07495 5.19745 5.25191 5.35345 5.43815 5.46079 5.52753 5.63722 5.79271 5.86840 6.11561 6.75591 6.84603 7.35444 8.92134 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024675 B = 0.003188 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.467537 B = 8781.078996 C = 9391.417223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.976 3.024 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.037 3.963 10 C -0.093 4.093 11 C 0.463 3.537 12 O -0.546 6.546 13 O -0.352 6.352 14 C 0.073 3.927 15 C -0.143 4.143 16 C -0.091 4.091 17 C -0.051 4.051 18 C -0.110 4.110 19 C -0.087 4.087 20 C -0.157 4.157 21 C 0.065 3.935 22 F -0.157 7.157 23 C -0.170 4.170 24 H 0.264 0.736 25 H -0.011 1.011 26 H -0.012 1.012 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.155 0.845 32 H 0.176 0.824 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.150 0.850 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 -25.113 5.632 26.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.800 3.200 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.098 0.902 9 C 0.000 4.000 10 C -0.130 4.130 11 C 0.308 3.692 12 O -0.436 6.436 13 O -0.269 6.269 14 C 0.000 4.000 15 C -0.161 4.161 16 C -0.109 4.109 17 C -0.051 4.051 18 C -0.127 4.127 19 C -0.105 4.105 20 C -0.176 4.176 21 C 0.046 3.954 22 F -0.135 7.135 23 C -0.188 4.188 24 H 0.072 0.928 25 H 0.007 0.993 26 H 0.006 0.994 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.172 0.828 32 H 0.193 0.807 33 H 0.185 0.815 34 H 0.188 0.812 35 H 0.168 0.832 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.451 -25.035 5.607 26.228 hybrid contribution -1.036 1.206 -0.459 1.654 sum 4.416 -23.830 5.148 24.776 Atomic orbital electron populations 1.70174 1.08324 1.27900 1.51300 1.26136 0.95736 1.03999 0.94481 0.85232 0.79333 0.77880 0.77550 1.17506 1.20637 1.20609 1.21673 0.94168 0.91160 1.51051 0.90247 1.18815 0.93722 0.92139 0.95355 1.21532 0.99289 0.85757 1.06422 1.24615 0.87200 0.86640 0.70735 1.90640 1.17682 1.88335 1.46973 1.86516 1.41737 1.14703 1.83962 1.22641 0.93665 0.81480 1.02177 1.23088 1.01009 0.92075 0.99931 1.22004 0.94716 1.00133 0.94008 1.19222 0.92685 0.97706 0.95526 1.21776 0.99902 0.98297 0.92760 1.21424 0.90681 0.97101 1.01244 1.21560 1.02061 1.00582 0.93402 1.18058 0.82064 1.00623 0.94632 1.91478 1.49420 1.86472 1.86167 1.21625 0.92336 1.03131 1.01731 0.92759 0.99271 0.99392 0.86469 0.86316 0.91198 0.91163 0.82758 0.80698 0.81487 0.81208 0.83222 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.12 13.29 21.45 0.28 -58.84 16 2 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 3 Si 0.98 44.05 29.54 68.60 2.03 46.08 16 4 H -0.25 -10.45 7.11 99.48 0.71 -9.75 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.54 -30.66 9.11 25.60 0.23 -30.43 16 8 H 0.08 4.08 7.74 -2.91 -0.02 4.05 16 9 C 0.04 2.05 4.26 29.85 0.13 2.18 16 10 C -0.09 -3.83 5.75 29.85 0.17 -3.66 16 11 C 0.46 19.09 7.96 71.24 0.57 19.66 16 12 O -0.55 -27.03 15.73 21.98 0.35 -26.68 16 13 O -0.35 -11.74 10.20 -51.39 -0.52 -12.27 16 14 C 0.07 2.07 4.05 71.23 0.29 2.36 16 15 C -0.14 -2.66 9.85 24.53 0.24 -2.42 16 16 C -0.09 -1.33 9.81 23.65 0.23 -1.10 16 17 C -0.05 -0.95 5.19 -20.12 -0.10 -1.06 16 18 C -0.11 -1.49 9.78 22.52 0.22 -1.27 16 19 C -0.09 -1.17 10.03 22.22 0.22 -0.95 16 20 C -0.16 -3.00 10.02 22.36 0.22 -2.77 16 21 C 0.07 1.68 7.29 22.34 0.16 1.84 16 22 F -0.16 -4.76 17.26 44.97 0.78 -3.99 16 23 C -0.17 -4.15 7.39 22.57 0.17 -3.99 16 24 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 25 H -0.01 -0.69 8.10 -2.39 -0.02 -0.71 16 26 H -0.01 -0.77 8.10 -2.39 -0.02 -0.79 16 27 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 28 H 0.12 4.29 8.14 -2.39 -0.02 4.27 16 29 H 0.07 2.04 7.51 -2.39 -0.02 2.02 16 30 H 0.07 2.19 5.28 -2.39 -0.01 2.18 16 31 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.13 3.28 5.79 -2.91 -0.02 3.26 16 Total: -1.00 -76.54 320.69 7.21 -69.33 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.09 Total: 7.86 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 3.22 Total: -21.49 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.28 Total: -58.84 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.18 Total: -38.95 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.78 Total: -3.99 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -76.54 7.21 -69.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893549153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.082 kcal (2) G-P(sol) polarization free energy of solvation -76.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds