Wall clock time and date at job start Tue Mar 31 2020 00:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38386 * 119.92601 * 2 1 4 4 C 1.38335 * 120.28886 * 179.97438 * 3 2 1 5 5 C 1.37976 * 120.15053 * 359.97438 * 4 3 2 6 6 N 1.48019 * 120.07742 * 179.97438 * 5 4 3 7 7 O 1.21797 * 119.99660 * 359.97438 * 6 5 4 8 8 O 1.21801 * 120.00058 * 179.97438 * 6 5 4 9 9 C 1.39556 * 119.84966 * 359.97438 * 5 4 3 10 10 C 1.47850 * 120.14467 * 180.02562 * 9 5 4 11 11 O 1.21558 * 119.99853 * 89.99833 * 10 9 5 12 12 N 1.34773 * 119.99773 * 269.99828 * 10 9 5 13 13 C 1.46505 * 119.99523 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.46513 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00488 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99870 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00108 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00300 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47417 * 90.00262 * 18 16 14 20 20 H 1.48507 * 109.47424 * 210.00319 * 18 16 14 21 21 H 1.48501 * 109.47115 * 330.00376 * 18 16 14 22 22 C 1.37930 * 119.92886 * 179.72156 * 2 1 3 23 23 C 1.50707 * 120.07148 * 359.97438 * 22 2 1 24 24 H 1.09002 * 109.47152 * 90.00138 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00238 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00219 * 1 2 3 27 27 H 1.08002 * 119.85395 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.92408 * 180.02562 * 4 3 2 29 29 H 0.96990 * 120.00189 * 0.02562 * 12 10 9 30 30 H 1.08991 * 109.47167 * 300.00133 * 13 12 10 31 31 H 1.08999 * 109.47036 * 60.00905 * 13 12 10 32 32 H 0.96994 * 120.00164 * 179.97438 * 17 16 14 33 33 H 1.08994 * 109.46861 * 90.00304 * 23 22 2 34 34 H 1.09001 * 109.46786 * 209.99728 * 23 22 2 35 35 H 1.08992 * 109.47166 * 329.99565 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 0.0005 5 6 4.2813 0.0194 0.0016 6 7 5.7614 0.0307 0.0016 7 8 6.3623 1.0901 0.0002 8 8 6.3785 -1.0195 0.0030 9 6 3.5912 -1.1936 0.0027 10 6 4.3353 -2.4712 0.0044 11 8 4.6408 -2.9951 1.0579 12 7 4.6749 -3.0547 -1.1620 13 6 5.4127 -4.3204 -1.1602 14 6 5.6664 -4.7558 -2.5805 15 1 5.3138 -4.1501 -3.4022 16 6 6.3497 -5.9268 -2.8309 17 7 6.7796 -6.6642 -1.8303 18 14 6.6650 -6.4662 -4.5913 19 1 7.9578 -5.9037 -5.0575 20 1 6.7195 -7.9490 -4.6525 21 1 5.5681 -5.9748 -5.4635 22 6 2.1952 -1.1953 0.0058 23 6 1.4417 -2.5005 0.0127 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6538 2.1326 -0.0004 28 1 4.1136 2.1476 0.0009 29 1 4.4314 -2.6364 -2.0025 30 1 6.3644 -4.1854 -0.6464 31 1 4.8266 -5.0819 -0.6457 32 1 7.2600 -7.4882 -2.0065 33 1 1.2597 -2.8203 -1.0132 34 1 2.0310 -3.2575 0.5302 35 1 0.4896 -2.3676 0.5263 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897590731.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:34 Heat of formation + Delta-G solvation = -23.144531 kcal Electronic energy + Delta-G solvation = -21598.697388 eV Core-core repulsion = 18178.816419 eV Total energy + Delta-G solvation = -3419.880969 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.05137 -40.24057 -38.37305 -36.26678 -34.23171 -34.14967 -32.85139 -32.15195 -28.87155 -28.01249 -27.03663 -25.13065 -23.91423 -22.16879 -21.38860 -20.00903 -18.74343 -18.42327 -17.50013 -17.29100 -16.38092 -15.89706 -15.41829 -15.07314 -14.65690 -14.40017 -14.03230 -13.93634 -13.24312 -13.10475 -12.95651 -12.53750 -12.38395 -12.02795 -11.91379 -11.73540 -11.66591 -11.29401 -10.99211 -10.90806 -10.84856 -10.81136 -10.33667 -9.54901 -9.37765 -9.33319 -9.18904 -8.73029 -7.93234 -6.13793 -4.20468 -0.18342 0.64337 1.37781 1.51810 2.98045 3.07079 3.26787 3.32556 3.34284 3.69153 4.15901 4.26234 4.34913 4.47573 4.60915 4.68612 4.99602 5.10454 5.17370 5.22559 5.27951 5.35519 5.43254 5.51756 5.56883 5.70781 5.86716 6.00642 6.21591 6.54299 7.28679 7.32962 7.56067 7.64517 7.83800 7.98465 8.51443 8.72313 8.96431 9.44965 10.96429 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019055 B = 0.005208 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.107482 B = 5374.717872 C = 6110.495921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.041 4.041 3 C -0.112 4.112 4 C -0.061 4.061 5 C -0.024 4.024 6 N 0.021 4.979 7 O -0.171 6.171 8 O -0.120 6.120 9 C -0.047 4.047 10 C 0.549 3.451 11 O -0.531 6.531 12 N -0.690 5.690 13 C 0.252 3.748 14 C -0.542 4.542 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.903 3.097 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.274 1.274 22 C -0.054 4.054 23 C -0.127 4.127 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.147 0.853 28 H 0.155 0.845 29 H 0.389 0.611 30 H 0.036 0.964 31 H 0.029 0.971 32 H 0.266 0.734 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.881 15.522 1.763 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.041 4.041 3 C -0.130 4.130 4 C -0.080 4.080 5 C -0.108 4.108 6 N 0.542 4.458 7 O -0.382 6.382 8 O -0.342 6.342 9 C -0.052 4.052 10 C 0.331 3.669 11 O -0.409 6.409 12 N -0.337 5.337 13 C 0.132 3.868 14 C -0.581 4.581 15 H 0.080 0.920 16 C -0.138 4.138 17 N -0.521 5.521 18 Si 0.730 3.270 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.056 4.056 23 C -0.183 4.183 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.165 0.835 28 H 0.173 0.827 29 H 0.221 0.779 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.238 14.950 2.549 21.499 hybrid contribution 0.668 0.023 -1.313 1.473 sum -14.570 14.974 1.237 20.929 Atomic orbital electron populations 1.21012 0.89478 1.04010 1.03511 1.20150 0.97322 0.92014 0.94645 1.21116 0.92385 0.98595 1.00924 1.20940 0.94608 0.96877 0.95545 1.21128 0.80025 0.95657 1.13946 1.43577 1.03231 1.00793 0.98166 1.94475 1.69426 1.20214 1.54102 1.94738 1.67604 1.20346 1.51515 1.20215 0.94252 0.93856 0.96855 1.17711 0.80017 0.83241 0.85924 1.90807 1.55173 1.63876 1.31069 1.46366 1.55430 1.25964 1.05917 1.19209 0.91791 0.78157 0.97639 1.21176 1.37932 1.07591 0.91370 0.92037 1.24918 0.95111 0.96099 0.97704 1.69971 1.37015 1.14306 1.30831 0.86425 0.78754 0.77793 0.83979 1.20387 1.21007 1.19865 1.19837 0.90418 0.96745 0.98555 1.21022 1.00259 0.93074 1.03938 0.89774 0.90617 0.90048 0.83480 0.82706 0.77899 0.94573 0.95313 0.92427 0.89543 0.89951 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 9.61 36.01 0.35 -0.34 16 2 C -0.04 -0.38 5.87 -104.68 -0.61 -0.99 16 3 C -0.11 -0.95 9.69 -39.49 -0.38 -1.33 16 4 C -0.06 -0.69 9.54 -39.64 -0.38 -1.07 16 5 C -0.02 -0.38 6.88 -79.55 -0.55 -0.93 16 6 N 0.02 0.41 4.45 34.16 0.15 0.56 16 7 O -0.17 -3.07 18.45 -29.46 -0.54 -3.61 16 8 O -0.12 -2.71 16.26 -33.26 -0.54 -3.25 16 9 C -0.05 -0.78 5.63 -104.96 -0.59 -1.37 16 10 C 0.55 11.63 3.13 -12.33 -0.04 11.59 16 11 O -0.53 -13.35 16.98 -3.42 -0.06 -13.41 16 12 N -0.69 -15.14 5.43 -62.43 -0.34 -15.48 16 13 C 0.25 6.75 5.43 -5.19 -0.03 6.72 16 14 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 15 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 16 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 17 N -0.88 -26.15 13.29 55.43 0.74 -25.41 16 18 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 C -0.05 -0.68 5.91 -104.22 -0.62 -1.30 16 23 C -0.13 -1.44 9.21 36.01 0.33 -1.11 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 26 H 0.08 0.42 5.93 -51.93 -0.31 0.12 16 27 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 28 H 0.16 1.45 7.61 -52.48 -0.40 1.05 16 29 H 0.39 7.57 8.31 -40.82 -0.34 7.24 16 30 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.19 7.08 -51.93 -0.37 0.82 16 35 H 0.08 0.67 5.94 -51.93 -0.31 0.36 16 LS Contribution 310.84 15.07 4.68 4.68 Total: -1.00 -34.29 310.84 -7.66 -41.95 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -3.79 Total: 1.51 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -2.94 Total: -3.55 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.55 Total: -40.33 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -1.14 Total: -20.27 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.29 -7.66 -41.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897590731.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.805 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds