Wall clock time and date at job start Tue Mar 31 2020 00:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38386 * 119.92601 * 2 1 4 4 C 1.38335 * 120.28886 * 179.97438 * 3 2 1 5 5 C 1.37976 * 120.15053 * 359.97438 * 4 3 2 6 6 N 1.48019 * 120.07742 * 179.97438 * 5 4 3 7 7 O 1.21797 * 119.99660 * 359.97438 * 6 5 4 8 8 O 1.21801 * 120.00058 * 179.97438 * 6 5 4 9 9 C 1.39556 * 119.84966 * 359.97438 * 5 4 3 10 10 C 1.47850 * 120.14467 * 180.02562 * 9 5 4 11 11 O 1.21558 * 119.99853 * 89.99833 * 10 9 5 12 12 N 1.34773 * 119.99773 * 269.99828 * 10 9 5 13 13 C 1.46505 * 119.99523 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.46513 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00488 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99870 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00108 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00300 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47417 * 90.00262 * 18 16 14 20 20 H 1.48507 * 109.47424 * 210.00319 * 18 16 14 21 21 H 1.48501 * 109.47115 * 330.00376 * 18 16 14 22 22 C 1.37930 * 119.92886 * 179.72156 * 2 1 3 23 23 C 1.50707 * 120.07148 * 359.97438 * 22 2 1 24 24 H 1.09002 * 109.47152 * 90.00138 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00238 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00219 * 1 2 3 27 27 H 1.08002 * 119.85395 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.92408 * 180.02562 * 4 3 2 29 29 H 0.96990 * 120.00189 * 0.02562 * 12 10 9 30 30 H 1.08991 * 109.47167 * 300.00133 * 13 12 10 31 31 H 1.08999 * 109.47036 * 60.00905 * 13 12 10 32 32 H 0.96994 * 120.00164 * 179.97438 * 17 16 14 33 33 H 1.08994 * 109.46861 * 90.00304 * 23 22 2 34 34 H 1.09001 * 109.46786 * 209.99728 * 23 22 2 35 35 H 1.08992 * 109.47166 * 329.99565 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 0.0005 5 6 4.2813 0.0194 0.0016 6 7 5.7614 0.0307 0.0016 7 8 6.3623 1.0901 0.0002 8 8 6.3785 -1.0195 0.0030 9 6 3.5912 -1.1936 0.0027 10 6 4.3353 -2.4712 0.0044 11 8 4.6408 -2.9951 1.0579 12 7 4.6749 -3.0547 -1.1620 13 6 5.4127 -4.3204 -1.1602 14 6 5.6664 -4.7558 -2.5805 15 1 5.3138 -4.1501 -3.4022 16 6 6.3497 -5.9268 -2.8309 17 7 6.7796 -6.6642 -1.8303 18 14 6.6650 -6.4662 -4.5913 19 1 7.9578 -5.9037 -5.0575 20 1 6.7195 -7.9490 -4.6525 21 1 5.5681 -5.9748 -5.4635 22 6 2.1952 -1.1953 0.0058 23 6 1.4417 -2.5005 0.0127 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6538 2.1326 -0.0004 28 1 4.1136 2.1476 0.0009 29 1 4.4314 -2.6364 -2.0025 30 1 6.3644 -4.1854 -0.6464 31 1 4.8266 -5.0819 -0.6457 32 1 7.2600 -7.4882 -2.0065 33 1 1.2597 -2.8203 -1.0132 34 1 2.0310 -3.2575 0.5302 35 1 0.4896 -2.3676 0.5263 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897590731.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:33 Heat of formation + Delta-G solvation = -47.452488 kcal Electronic energy + Delta-G solvation = -21599.751460 eV Core-core repulsion = 18178.816419 eV Total energy + Delta-G solvation = -3420.935041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 4.08 seconds Orbital eigenvalues (eV) -43.42006 -41.48019 -39.88229 -37.72412 -36.26042 -35.07631 -34.50169 -33.61417 -29.74247 -29.68464 -28.52298 -26.18331 -25.48170 -23.87187 -22.50329 -21.63561 -20.10680 -19.78615 -19.04004 -18.71004 -17.81203 -17.44622 -17.24079 -16.42893 -15.83863 -15.64796 -15.38021 -15.18602 -14.69839 -14.09474 -13.98035 -13.93820 -13.69234 -13.31942 -13.19151 -12.96529 -12.89688 -12.77875 -12.72969 -12.48223 -12.37857 -12.26334 -12.17672 -11.54450 -11.14214 -10.84550 -10.36052 -10.18459 -9.98043 -8.31341 -6.48762 -1.41714 -0.29348 0.16075 0.28378 1.39860 1.42924 1.44535 1.54523 2.03146 2.18948 2.40167 3.03131 3.15738 3.41135 3.52523 3.69613 3.72741 3.92718 4.21854 4.43273 4.51377 4.62499 4.65548 4.76843 4.86378 4.99613 5.04001 5.06019 5.20241 5.21110 5.25372 5.36676 5.53318 5.55390 5.79156 6.34852 6.56688 6.66648 7.12198 7.27632 8.81258 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019055 B = 0.005208 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.107482 B = 5374.717872 C = 6110.495921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.017 4.017 3 C -0.085 4.085 4 C -0.048 4.048 5 C -0.051 4.051 6 N 0.025 4.975 7 O -0.114 6.114 8 O -0.244 6.244 9 C -0.081 4.081 10 C 0.556 3.444 11 O -0.586 6.586 12 N -0.688 5.688 13 C 0.273 3.727 14 C -0.557 4.557 15 H 0.080 0.920 16 C 0.006 3.994 17 N -0.929 5.929 18 Si 0.987 3.013 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.254 1.254 22 C -0.060 4.060 23 C -0.127 4.127 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.206 0.794 28 H 0.183 0.817 29 H 0.401 0.599 30 H -0.015 1.015 31 H -0.004 1.004 32 H 0.270 0.730 33 H 0.095 0.905 34 H 0.037 0.963 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.766 19.369 -0.133 26.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.017 4.017 3 C -0.103 4.103 4 C -0.067 4.067 5 C -0.135 4.135 6 N 0.539 4.461 7 O -0.347 6.347 8 O -0.436 6.436 9 C -0.085 4.085 10 C 0.342 3.658 11 O -0.468 6.468 12 N -0.335 5.335 13 C 0.151 3.849 14 C -0.595 4.595 15 H 0.098 0.902 16 C -0.194 4.194 17 N -0.567 5.567 18 Si 0.810 3.190 19 H -0.199 1.199 20 H -0.204 1.204 21 H -0.178 1.178 22 C -0.061 4.061 23 C -0.183 4.183 24 H 0.123 0.877 25 H 0.125 0.875 26 H 0.104 0.896 27 H 0.223 0.777 28 H 0.200 0.800 29 H 0.236 0.764 30 H 0.003 0.997 31 H 0.014 0.986 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.056 0.944 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.117 18.586 0.640 26.670 hybrid contribution 1.672 -0.832 -0.634 1.973 sum -17.445 17.754 0.006 24.890 Atomic orbital electron populations 1.21215 0.85825 1.05826 1.05228 1.20690 0.99591 0.90535 0.90905 1.21817 0.90941 1.00464 0.97058 1.21469 0.95951 0.95686 0.93558 1.21388 0.77424 0.97217 1.17507 1.44072 1.04923 1.00078 0.96998 1.94373 1.70717 1.19724 1.49844 1.94782 1.69205 1.21230 1.58409 1.19834 0.95673 0.91211 1.01832 1.18368 0.78707 0.84366 0.84363 1.90738 1.57223 1.66029 1.32809 1.46045 1.55378 1.24787 1.07266 1.18582 0.89441 0.79632 0.97251 1.21527 1.38279 1.08219 0.91469 0.90236 1.26072 0.94328 0.95918 1.03062 1.70142 1.37766 1.14921 1.33902 0.85129 0.79087 0.77355 0.77456 1.19871 1.20409 1.17775 1.20095 0.88582 0.98904 0.98518 1.21086 1.01155 0.91653 1.04440 0.87700 0.87506 0.89640 0.77716 0.79960 0.76435 0.99691 0.98630 0.92105 0.88689 0.94350 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.52 9.61 71.24 0.68 0.16 16 2 C -0.02 -0.22 5.87 -19.90 -0.12 -0.34 16 3 C -0.08 -0.87 9.69 22.33 0.22 -0.66 16 4 C -0.05 -0.88 9.54 22.23 0.21 -0.66 16 5 C -0.05 -1.62 6.88 36.63 0.25 -1.37 16 6 N 0.03 1.00 4.45 -45.85 -0.20 0.80 16 7 O -0.11 -4.03 18.45 18.89 0.35 -3.68 16 8 O -0.24 -12.21 16.26 22.51 0.37 -11.85 16 9 C -0.08 -2.78 5.63 -20.09 -0.11 -2.89 16 10 C 0.56 26.02 3.13 86.79 0.27 26.30 16 11 O -0.59 -33.15 16.98 4.45 0.08 -33.07 16 12 N -0.69 -33.24 5.43 -469.70 -2.55 -35.79 16 13 C 0.27 16.20 5.43 85.63 0.46 16.66 16 14 C -0.56 -32.10 9.28 25.60 0.24 -31.87 16 15 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 16 C 0.01 0.35 5.46 84.65 0.46 0.81 16 17 N -0.93 -58.05 13.29 21.45 0.28 -57.77 16 18 Si 0.99 43.87 29.54 68.60 2.03 45.90 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 21 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 22 C -0.06 -1.41 5.91 -19.61 -0.12 -1.52 16 23 C -0.13 -2.82 9.21 71.24 0.66 -2.17 16 24 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 25 H 0.11 -0.07 8.08 -2.39 -0.02 -0.09 16 26 H 0.08 0.37 5.93 -2.38 -0.01 0.36 16 27 H 0.21 -0.04 8.06 -2.91 -0.02 -0.06 16 28 H 0.18 2.37 7.61 -2.91 -0.02 2.35 16 29 H 0.40 16.89 8.31 -92.72 -0.77 16.12 16 30 H -0.01 -1.02 8.14 -2.39 -0.02 -1.04 16 31 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.04 1.19 7.08 -2.39 -0.02 1.18 16 35 H 0.12 1.64 5.94 -2.39 -0.01 1.62 16 Total: -1.00 -87.85 310.84 3.83 -84.02 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.37 Total: 8.99 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 3.11 Total: 2.45 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -2.47 Total: -92.76 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: 0.79 Total: -48.60 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -87.85 3.83 -84.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897590731.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.565 kcal (2) G-P(sol) polarization free energy of solvation -87.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.08 seconds