Wall clock time and date at job start Mon Mar 30 2020 23:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00503 * 2 1 4 4 H 1.48498 * 109.47614 * 240.00260 * 3 2 1 5 5 H 1.48501 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47384 * 119.99964 * 3 2 1 7 7 C 1.37877 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00213 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00071 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47352 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47158 * 180.02562 * 10 9 7 12 12 O 1.42890 * 109.47147 * 180.02562 * 11 10 9 13 13 C 1.34907 * 117.00277 * 179.97438 * 12 11 10 14 14 O 1.21625 * 119.99801 * 0.02562 * 13 12 11 15 15 C 1.46239 * 120.00325 * 180.27364 * 13 12 11 16 16 C 1.34911 * 120.00193 * 172.94558 * 15 13 12 17 17 C 1.47180 * 119.99984 * 349.03776 * 16 15 13 18 18 C 1.39869 * 120.16113 * 136.38396 * 17 16 15 19 19 C 1.37869 * 119.88046 * 179.97438 * 18 17 16 20 20 C 1.38395 * 120.19766 * 359.97438 * 19 18 17 21 21 C 1.38595 * 120.32415 * 0.02562 * 20 19 18 22 22 F 1.35104 * 119.94037 * 180.02562 * 21 20 19 23 23 C 1.38142 * 120.12165 * 359.74204 * 21 20 19 24 24 H 0.97001 * 119.99588 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47562 * 60.00109 * 9 7 2 26 26 H 1.09006 * 109.47085 * 300.00237 * 9 7 2 27 27 H 1.09004 * 109.46792 * 60.00175 * 10 9 7 28 28 H 1.08999 * 109.46856 * 299.99705 * 10 9 7 29 29 H 1.09003 * 109.47041 * 59.99588 * 11 10 9 30 30 H 1.09001 * 109.47161 * 300.00365 * 11 10 9 31 31 H 1.08005 * 119.99601 * 352.94550 * 15 13 12 32 32 H 1.08002 * 120.00341 * 169.04205 * 16 15 13 33 33 H 1.08000 * 120.05973 * 359.95770 * 18 17 16 34 34 H 1.08001 * 119.90467 * 180.02562 * 19 18 17 35 35 H 1.08006 * 119.83590 * 180.02562 * 20 19 18 36 36 H 1.07999 * 120.10545 * 180.27602 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 8 2.4086 -6.0733 -0.0006 13 6 1.8929 -7.3199 -0.0005 14 8 0.6872 -7.4792 -0.0014 15 6 2.7837 -8.4797 0.0062 16 6 2.2743 -9.7207 0.1497 17 6 0.8660 -9.8976 0.5390 18 6 0.0735 -10.8532 -0.1053 19 6 -1.2449 -11.0144 0.2643 20 6 -1.7860 -10.2341 1.2711 21 6 -1.0083 -9.2847 1.9151 22 9 -1.5443 -8.5275 2.8973 23 6 0.3155 -9.1153 1.5587 24 1 -0.4849 0.8401 0.0004 25 1 0.6239 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6044 0.8895 28 1 2.8718 -3.6045 -0.8905 29 1 0.8537 -5.0446 -0.8914 30 1 0.8531 -5.0451 0.8885 31 1 3.8493 -8.3427 -0.1039 32 1 2.8999 -10.5843 -0.0209 33 1 0.4935 -11.4634 -0.8912 34 1 -1.8570 -11.7524 -0.2327 35 1 -2.8194 -10.3656 1.5562 36 1 0.9225 -8.3786 2.0638 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912956523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:05 Heat of formation + Delta-G solvation = -94.797755 kcal Electronic energy + Delta-G solvation = -20305.468009 eV Core-core repulsion = 16862.559961 eV Total energy + Delta-G solvation = -3442.908048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.87712 -40.53818 -39.00469 -36.67729 -34.11907 -33.95937 -31.70405 -30.73162 -30.08112 -27.22988 -24.95504 -23.29195 -22.68227 -21.98779 -20.41712 -19.57142 -18.14176 -17.19442 -16.61394 -16.37636 -16.29314 -16.05415 -15.65493 -15.46813 -14.51190 -14.37513 -14.27518 -13.85854 -13.50297 -13.24945 -12.85081 -12.42544 -12.17989 -12.11366 -12.01170 -11.80973 -11.30551 -10.94086 -10.69607 -10.61423 -10.47915 -10.32684 -10.18117 -9.68640 -9.50455 -9.16419 -8.77922 -8.54064 -8.37335 -6.02104 -4.05321 0.30102 1.10329 1.47544 2.93651 2.99628 3.33242 3.37483 3.40122 3.47897 4.09660 4.39097 4.44379 4.58423 4.81596 4.83458 4.90912 5.07519 5.23545 5.33629 5.51116 5.59619 5.65023 5.65265 5.79759 5.89966 6.00195 6.04563 6.13615 6.22114 6.51741 6.55468 6.73524 6.86632 7.00029 7.61590 7.73002 7.94424 7.96567 8.37339 9.00749 9.58806 11.09333 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027222 B = 0.003127 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.314497 B = 8951.110473 C = 9652.775744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.067 3.933 12 O -0.348 6.348 13 C 0.478 3.522 14 O -0.498 6.498 15 C -0.175 4.175 16 C -0.024 4.024 17 C -0.050 4.050 18 C -0.109 4.109 19 C -0.103 4.103 20 C -0.143 4.143 21 C 0.091 3.909 22 F -0.140 7.140 23 C -0.080 4.080 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.267 -25.320 0.797 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.145 4.145 11 C -0.007 4.007 12 O -0.264 6.264 13 C 0.323 3.677 14 O -0.388 6.388 15 C -0.193 4.193 16 C -0.042 4.042 17 C -0.050 4.050 18 C -0.127 4.127 19 C -0.122 4.122 20 C -0.162 4.162 21 C 0.072 3.928 22 F -0.119 7.119 23 C -0.098 4.098 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.719 -25.148 0.838 25.220 hybrid contribution 0.161 1.297 0.102 1.311 sum 1.880 -23.851 0.940 23.944 Atomic orbital electron populations 1.69958 1.06092 1.26863 1.50435 1.25031 0.94882 0.99356 0.95196 0.86601 0.79528 0.82885 0.78658 1.20177 1.21258 1.20181 1.21140 0.93078 0.90716 1.51141 0.92486 1.19047 0.93835 0.90754 0.97659 1.21762 0.99870 0.91027 1.01891 1.23096 0.91559 0.84065 1.01974 1.86193 1.42296 1.14944 1.82989 1.21448 0.87776 0.84482 0.73975 1.90957 1.16304 1.86509 1.45034 1.22472 1.00356 0.90018 1.06501 1.22469 0.93253 0.96817 0.91677 1.18703 0.93725 0.96361 0.96242 1.21218 0.94102 0.97705 0.99682 1.20823 0.95220 0.99354 0.96758 1.21218 1.00437 0.96601 0.97929 1.17491 0.92284 0.93305 0.89749 1.91514 1.86289 1.74455 1.59596 1.21107 0.93914 0.97465 0.97361 0.92835 0.96265 0.96266 0.92184 0.92182 0.91783 0.91841 0.83283 0.83257 0.85273 0.85047 0.84940 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.50 16 10 C -0.11 -2.29 5.52 -26.73 -0.15 -2.44 16 11 C 0.07 1.27 5.38 37.16 0.20 1.46 16 12 O -0.35 -5.88 10.12 -41.06 -0.42 -6.29 16 13 C 0.48 7.14 6.92 33.94 0.24 7.38 16 14 O -0.50 -8.59 11.93 -19.36 -0.23 -8.82 16 15 C -0.17 -1.76 10.04 -37.55 -0.38 -2.14 16 16 C -0.02 -0.20 9.81 -37.13 -0.36 -0.56 16 17 C -0.05 -0.54 4.53 -105.07 -0.48 -1.02 16 18 C -0.11 -0.99 9.79 -39.11 -0.38 -1.37 16 19 C -0.10 -0.93 10.03 -39.66 -0.40 -1.33 16 20 C -0.14 -1.54 10.02 -39.39 -0.39 -1.94 16 21 C 0.09 1.21 7.29 -39.48 -0.29 0.93 16 22 F -0.14 -2.07 17.26 2.25 0.04 -2.03 16 23 C -0.08 -1.04 6.58 -39.03 -0.26 -1.30 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 30 H 0.06 1.23 8.13 -51.93 -0.42 0.80 16 31 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 36 H 0.13 1.72 7.03 -52.49 -0.37 1.35 16 LS Contribution 321.11 15.07 4.84 4.84 Total: -1.00 -33.01 321.11 -7.81 -40.82 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -4.56 Total: -3.31 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -3.20 Total: -15.52 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.74 Total: -26.43 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.65 Total: -15.11 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.01 -7.81 -40.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912956523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.979 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds