Wall clock time and date at job start Mon Mar 30 2020 23:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00503 * 2 1 4 4 H 1.48498 * 109.47614 * 240.00260 * 3 2 1 5 5 H 1.48501 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47384 * 119.99964 * 3 2 1 7 7 C 1.37877 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00213 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00071 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47352 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47158 * 180.02562 * 10 9 7 12 12 O 1.42890 * 109.47147 * 180.02562 * 11 10 9 13 13 C 1.34907 * 117.00277 * 179.97438 * 12 11 10 14 14 O 1.21625 * 119.99801 * 0.02562 * 13 12 11 15 15 C 1.46239 * 120.00325 * 180.27364 * 13 12 11 16 16 C 1.34911 * 120.00193 * 172.94558 * 15 13 12 17 17 C 1.47180 * 119.99984 * 349.03776 * 16 15 13 18 18 C 1.39869 * 120.16113 * 136.38396 * 17 16 15 19 19 C 1.37869 * 119.88046 * 179.97438 * 18 17 16 20 20 C 1.38395 * 120.19766 * 359.97438 * 19 18 17 21 21 C 1.38595 * 120.32415 * 0.02562 * 20 19 18 22 22 F 1.35104 * 119.94037 * 180.02562 * 21 20 19 23 23 C 1.38142 * 120.12165 * 359.74204 * 21 20 19 24 24 H 0.97001 * 119.99588 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47562 * 60.00109 * 9 7 2 26 26 H 1.09006 * 109.47085 * 300.00237 * 9 7 2 27 27 H 1.09004 * 109.46792 * 60.00175 * 10 9 7 28 28 H 1.08999 * 109.46856 * 299.99705 * 10 9 7 29 29 H 1.09003 * 109.47041 * 59.99588 * 11 10 9 30 30 H 1.09001 * 109.47161 * 300.00365 * 11 10 9 31 31 H 1.08005 * 119.99601 * 352.94550 * 15 13 12 32 32 H 1.08002 * 120.00341 * 169.04205 * 16 15 13 33 33 H 1.08000 * 120.05973 * 359.95770 * 18 17 16 34 34 H 1.08001 * 119.90467 * 180.02562 * 19 18 17 35 35 H 1.08006 * 119.83590 * 180.02562 * 20 19 18 36 36 H 1.07999 * 120.10545 * 180.27602 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 8 2.4086 -6.0733 -0.0006 13 6 1.8929 -7.3199 -0.0005 14 8 0.6872 -7.4792 -0.0014 15 6 2.7837 -8.4797 0.0062 16 6 2.2743 -9.7207 0.1497 17 6 0.8660 -9.8976 0.5390 18 6 0.0735 -10.8532 -0.1053 19 6 -1.2449 -11.0144 0.2643 20 6 -1.7860 -10.2341 1.2711 21 6 -1.0083 -9.2847 1.9151 22 9 -1.5443 -8.5275 2.8973 23 6 0.3155 -9.1153 1.5587 24 1 -0.4849 0.8401 0.0004 25 1 0.6239 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6044 0.8895 28 1 2.8718 -3.6045 -0.8905 29 1 0.8537 -5.0446 -0.8914 30 1 0.8531 -5.0451 0.8885 31 1 3.8493 -8.3427 -0.1039 32 1 2.8999 -10.5843 -0.0209 33 1 0.4935 -11.4634 -0.8912 34 1 -1.8570 -11.7524 -0.2327 35 1 -2.8194 -10.3656 1.5562 36 1 0.9225 -8.3786 2.0638 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912956523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:04 Heat of formation + Delta-G solvation = -112.778771 kcal Electronic energy + Delta-G solvation = -20306.247724 eV Core-core repulsion = 16862.559961 eV Total energy + Delta-G solvation = -3443.687763 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.92942 -41.70196 -39.91850 -37.95284 -35.95051 -34.96006 -33.69535 -31.56128 -30.95329 -29.07068 -26.21862 -24.80799 -23.60266 -23.07096 -22.22603 -20.61400 -19.19773 -18.65887 -18.11844 -17.77902 -17.24245 -17.13323 -16.73777 -16.58691 -16.50174 -15.62564 -15.19195 -14.98453 -14.69669 -14.23309 -14.14970 -13.90591 -13.80607 -13.61878 -13.19256 -12.80906 -12.75066 -12.54447 -12.41224 -12.15590 -12.03643 -11.75067 -11.44280 -11.41113 -11.26006 -10.97173 -10.59257 -9.66299 -9.37560 -8.23655 -6.36061 -0.51733 0.24869 0.65293 1.39863 1.43773 1.51663 1.79805 1.92620 2.40232 2.67639 3.09881 3.27323 3.60317 3.75581 3.85627 3.95021 4.04086 4.06201 4.16333 4.35824 4.38672 4.55558 4.73196 4.75400 4.82336 4.93570 5.03720 5.05074 5.12714 5.24002 5.37179 5.40863 5.46335 5.55650 5.59509 5.76944 5.93378 6.16211 6.73773 6.80131 7.33653 8.88572 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027222 B = 0.003127 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.314497 B = 8951.110473 C = 9652.775744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.026 3.974 10 C -0.092 4.092 11 C 0.080 3.920 12 O -0.352 6.352 13 C 0.469 3.531 14 O -0.529 6.529 15 C -0.194 4.194 16 C 0.009 3.991 17 C -0.069 4.069 18 C -0.100 4.100 19 C -0.100 4.100 20 C -0.150 4.150 21 C 0.051 3.949 22 F -0.161 7.161 23 C -0.102 4.102 24 H 0.265 0.735 25 H -0.005 1.005 26 H -0.007 1.007 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.181 0.819 32 H 0.205 0.795 33 H 0.170 0.830 34 H 0.168 0.832 35 H 0.146 0.854 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.248 -27.432 -0.483 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.085 0.915 9 C -0.011 4.011 10 C -0.130 4.130 11 C 0.006 3.994 12 O -0.268 6.268 13 C 0.317 3.683 14 O -0.420 6.420 15 C -0.213 4.213 16 C -0.008 4.008 17 C -0.069 4.069 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.169 4.169 21 C 0.032 3.968 22 F -0.140 7.140 23 C -0.121 4.121 24 H 0.074 0.926 25 H 0.014 0.986 26 H 0.011 0.989 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.198 0.802 32 H 0.222 0.778 33 H 0.187 0.813 34 H 0.186 0.814 35 H 0.164 0.836 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.719 -27.284 -0.441 27.540 hybrid contribution -0.545 1.788 0.496 1.934 sum 3.173 -25.497 0.054 25.693 Atomic orbital electron populations 1.70105 1.07989 1.28056 1.51310 1.26056 0.95813 1.03679 0.94474 0.85403 0.78173 0.77528 0.79369 1.18857 1.20871 1.18997 1.21600 0.93789 0.91815 1.51137 0.91532 1.18930 0.94261 0.92696 0.95219 1.21456 0.98641 0.90368 1.02542 1.22618 0.91272 0.84445 1.01050 1.86175 1.41564 1.15489 1.83619 1.22505 0.88385 0.84592 0.72792 1.90957 1.17876 1.86572 1.46634 1.22625 1.00995 0.88270 1.09390 1.23026 0.92171 0.97732 0.87892 1.19119 0.95521 0.96414 0.95823 1.21732 0.93875 0.96705 0.99452 1.21321 0.95803 0.99026 0.95582 1.21523 1.01031 0.96120 0.98208 1.17969 0.93236 0.94866 0.90747 1.91446 1.86613 1.75277 1.60637 1.21140 0.93884 0.98138 0.98914 0.92643 0.98644 0.98882 0.91540 0.91287 0.92567 0.93069 0.80160 0.77847 0.81278 0.81433 0.83573 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.17 13.29 21.45 0.28 -57.88 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 3 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -31.64 9.11 25.60 0.23 -31.41 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.09 -4.02 5.52 30.60 0.17 -3.85 16 11 C 0.08 3.19 5.38 71.98 0.39 3.57 16 12 O -0.35 -12.00 10.12 -58.22 -0.59 -12.59 16 13 C 0.47 14.04 6.92 69.90 0.48 14.52 16 14 O -0.53 -18.80 11.93 19.43 0.23 -18.57 16 15 C -0.19 -3.46 10.04 23.59 0.24 -3.23 16 16 C 0.01 0.12 9.81 23.86 0.23 0.35 16 17 C -0.07 -1.34 4.53 -20.15 -0.09 -1.43 16 18 C -0.10 -1.44 9.79 22.58 0.22 -1.22 16 19 C -0.10 -1.50 10.03 22.22 0.22 -1.28 16 20 C -0.15 -3.17 10.02 22.39 0.22 -2.94 16 21 C 0.05 1.43 7.29 22.33 0.16 1.59 16 22 F -0.16 -5.22 17.26 44.97 0.78 -4.45 16 23 C -0.10 -2.75 6.58 22.63 0.15 -2.60 16 24 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 25 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 27 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.06 2.28 8.13 -2.39 -0.02 2.26 16 30 H 0.05 2.12 8.13 -2.39 -0.02 2.10 16 31 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.20 0.43 8.06 -2.91 -0.02 0.41 16 33 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 34 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 35 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.11 3.14 7.03 -2.91 -0.02 3.12 16 Total: -1.00 -75.82 321.11 7.05 -68.77 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 1.07 Total: 4.02 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 3.24 Total: -26.02 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.28 Total: -57.88 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.36 Total: -31.15 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.78 Total: -4.45 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -75.82 7.05 -68.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912956523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.008 kcal (2) G-P(sol) polarization free energy of solvation -75.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds