Wall clock time and date at job start Mon Mar 30 2020 23:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00451 * 2 1 4 4 H 1.48505 * 109.46988 * 240.00244 * 3 2 1 5 5 H 1.48496 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99900 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.47264 * 180.02562 * 11 10 9 13 13 C 1.34919 * 117.00273 * 179.97438 * 12 11 10 14 14 O 1.21638 * 119.99943 * 0.02562 * 13 12 11 15 15 C 1.46134 * 120.00043 * 179.97438 * 13 12 11 16 16 C 1.35013 * 119.99957 * 180.02562 * 15 13 12 17 17 C 1.47035 * 119.99987 * 180.02562 * 16 15 13 18 18 C 1.39924 * 120.19282 * 359.71818 * 17 16 15 19 19 C 1.37797 * 119.84775 * 179.67593 * 18 17 16 20 20 C 1.38496 * 120.24347 * 0.63125 * 19 18 17 21 21 C 1.38270 * 120.39154 * 359.66743 * 20 19 18 22 22 C 1.38224 * 120.14180 * 0.02562 * 21 20 19 23 23 F 1.35099 * 120.11847 * 179.97438 * 22 21 20 24 24 H 0.97007 * 119.99539 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 26 26 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 27 27 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 28 28 H 1.08992 * 109.47534 * 300.00299 * 10 9 7 29 29 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 30 30 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 31 31 H 1.07995 * 120.00077 * 0.02562 * 15 13 12 32 32 H 1.08000 * 119.99525 * 359.97438 * 16 15 13 33 33 H 1.08002 * 120.07254 * 359.97438 * 18 17 16 34 34 H 1.08002 * 119.87733 * 180.31909 * 19 18 17 35 35 H 1.08002 * 119.80405 * 179.69981 * 20 19 18 36 36 H 1.07995 * 119.92533 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 8 2.4085 -6.0734 0.0018 13 6 1.8928 -7.3201 0.0029 14 8 0.6869 -7.4794 0.0029 15 6 2.7829 -8.4791 0.0030 16 6 2.2668 -9.7266 0.0037 17 6 3.1624 -10.8928 0.0044 18 6 4.5502 -10.7142 -0.0016 19 6 5.3829 -11.8120 0.0058 20 6 4.8513 -13.0909 0.0060 21 6 3.4814 -13.2790 0.0056 22 6 2.6312 -12.1891 0.0046 23 9 1.2928 -12.3734 0.0037 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8717 -3.6045 0.8906 28 1 2.8717 -3.6045 -0.8893 29 1 0.8530 -5.0451 -0.8886 30 1 0.8535 -5.0445 0.8914 31 1 3.8535 -8.3376 0.0026 32 1 1.1960 -9.8680 0.0045 33 1 4.9676 -9.7181 -0.0071 34 1 6.4542 -11.6747 0.0065 35 1 5.5106 -13.9463 0.0069 36 1 3.0750 -14.2795 0.0062 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912958628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:05 Heat of formation + Delta-G solvation = -107.958421 kcal Electronic energy + Delta-G solvation = -19411.923612 eV Core-core repulsion = 15968.444875 eV Total energy + Delta-G solvation = -3443.478737 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.33628 -40.27585 -39.43938 -36.71429 -34.57182 -33.95435 -31.70369 -31.09868 -30.23227 -27.22779 -25.18056 -23.54977 -22.95810 -21.77475 -20.39969 -19.51200 -18.46219 -17.56900 -16.96108 -16.36018 -16.31823 -16.17817 -16.03380 -15.68470 -14.73419 -14.47465 -14.20951 -14.01620 -13.65698 -13.41575 -13.02698 -12.75420 -12.20339 -12.19154 -11.92352 -11.76512 -11.57887 -10.95317 -10.87955 -10.70989 -10.61427 -10.43696 -10.33123 -9.68927 -9.49693 -9.39125 -9.16221 -8.74029 -8.37315 -6.02161 -4.05259 -0.04623 0.69004 1.45070 2.88374 2.91190 3.25389 3.33246 3.37498 3.40052 3.69501 4.15842 4.23325 4.39194 4.44890 4.66797 4.73659 4.83646 5.04842 5.31345 5.33572 5.38987 5.52091 5.60302 5.64155 5.65699 5.85382 5.87795 6.03513 6.06911 6.32716 6.50533 6.55907 6.86076 7.00191 7.61739 7.73198 7.93220 7.96378 8.37353 9.00797 9.58774 11.09239 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.045360 B = 0.002285 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.141370 B =12251.207880 C =12842.599139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.065 3.935 12 O -0.347 6.347 13 C 0.489 3.511 14 O -0.512 6.512 15 C -0.171 4.171 16 C -0.025 4.025 17 C -0.105 4.105 18 C -0.072 4.072 19 C -0.131 4.131 20 C -0.080 4.080 21 C -0.157 4.157 22 C 0.122 3.878 23 F -0.131 7.131 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.779 -27.980 0.007 29.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.145 4.145 11 C -0.008 4.008 12 O -0.263 6.263 13 C 0.335 3.665 14 O -0.403 6.403 15 C -0.190 4.190 16 C -0.043 4.043 17 C -0.106 4.106 18 C -0.090 4.090 19 C -0.149 4.149 20 C -0.098 4.098 21 C -0.176 4.176 22 C 0.102 3.898 23 F -0.109 7.109 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.198 -27.852 0.006 29.661 hybrid contribution -0.025 0.942 -0.001 0.942 sum 10.174 -26.910 0.005 28.769 Atomic orbital electron populations 1.69959 1.06087 1.26858 1.50451 1.25039 0.94891 0.99368 0.95220 0.86596 0.79519 0.82875 0.78651 1.20188 1.21278 1.20181 1.21138 0.93077 0.90701 1.51106 0.92480 1.19053 0.93852 0.90742 0.97692 1.21762 0.99882 0.90966 1.01937 1.23134 0.91595 0.83986 1.02104 1.86184 1.42193 1.14785 1.83147 1.21139 0.87401 0.84379 0.73611 1.90884 1.16451 1.87130 1.45794 1.22264 1.00324 0.90041 1.06361 1.22253 1.00181 0.90494 0.91412 1.18988 0.94161 0.91416 1.06037 1.21447 0.91216 1.00285 0.96081 1.21211 1.00629 0.92136 1.00941 1.21207 0.94126 0.97854 0.96630 1.21135 0.93816 0.98405 1.04231 1.17892 0.77434 0.93351 1.01102 1.91532 1.29993 1.95941 1.93421 0.92840 0.96235 0.96224 0.92148 0.92140 0.91692 0.91698 0.83906 0.84008 0.84025 0.84708 0.84678 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.28 5.52 -26.73 -0.15 -2.42 16 11 C 0.07 1.24 5.38 37.16 0.20 1.44 16 12 O -0.35 -5.96 10.12 -41.09 -0.42 -6.38 16 13 C 0.49 7.74 7.87 33.90 0.27 8.01 16 14 O -0.51 -9.54 16.00 -19.37 -0.31 -9.85 16 15 C -0.17 -1.95 9.53 -37.56 -0.36 -2.31 16 16 C -0.02 -0.27 9.26 -37.16 -0.34 -0.61 16 17 C -0.11 -0.94 5.87 -105.00 -0.62 -1.56 16 18 C -0.07 -0.50 9.41 -39.11 -0.37 -0.87 16 19 C -0.13 -0.70 10.03 -39.65 -0.40 -1.09 16 20 C -0.08 -0.40 10.04 -39.47 -0.40 -0.80 16 21 C -0.16 -1.02 10.01 -39.57 -0.40 -1.41 16 22 C 0.12 1.08 7.30 -38.89 -0.28 0.79 16 23 F -0.13 -1.34 16.62 2.25 0.04 -1.30 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.25 8.13 -51.93 -0.42 0.82 16 30 H 0.06 1.25 8.13 -51.93 -0.42 0.82 16 31 H 0.14 1.21 6.08 -52.49 -0.32 0.89 16 32 H 0.14 1.67 7.20 -52.49 -0.38 1.29 16 33 H 0.14 0.75 6.17 -52.49 -0.32 0.42 16 34 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 35 H 0.14 0.33 8.06 -52.49 -0.42 -0.10 16 36 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -32.68 325.14 -7.83 -40.51 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -4.37 Total: -4.27 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -3.39 Total: -13.97 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.73 Total: -16.22 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.68 -7.83 -40.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.445 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds