Wall clock time and date at job start Mon Mar 30 2020 23:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00451 * 2 1 4 4 H 1.48505 * 109.46988 * 240.00244 * 3 2 1 5 5 H 1.48496 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99900 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.47264 * 180.02562 * 11 10 9 13 13 C 1.34919 * 117.00273 * 179.97438 * 12 11 10 14 14 O 1.21638 * 119.99943 * 0.02562 * 13 12 11 15 15 C 1.46134 * 120.00043 * 179.97438 * 13 12 11 16 16 C 1.35013 * 119.99957 * 180.02562 * 15 13 12 17 17 C 1.47035 * 119.99987 * 180.02562 * 16 15 13 18 18 C 1.39924 * 120.19282 * 359.71818 * 17 16 15 19 19 C 1.37797 * 119.84775 * 179.67593 * 18 17 16 20 20 C 1.38496 * 120.24347 * 0.63125 * 19 18 17 21 21 C 1.38270 * 120.39154 * 359.66743 * 20 19 18 22 22 C 1.38224 * 120.14180 * 0.02562 * 21 20 19 23 23 F 1.35099 * 120.11847 * 179.97438 * 22 21 20 24 24 H 0.97007 * 119.99539 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 26 26 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 27 27 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 28 28 H 1.08992 * 109.47534 * 300.00299 * 10 9 7 29 29 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 30 30 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 31 31 H 1.07995 * 120.00077 * 0.02562 * 15 13 12 32 32 H 1.08000 * 119.99525 * 359.97438 * 16 15 13 33 33 H 1.08002 * 120.07254 * 359.97438 * 18 17 16 34 34 H 1.08002 * 119.87733 * 180.31909 * 19 18 17 35 35 H 1.08002 * 119.80405 * 179.69981 * 20 19 18 36 36 H 1.07995 * 119.92533 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 8 2.4085 -6.0734 0.0018 13 6 1.8928 -7.3201 0.0029 14 8 0.6869 -7.4794 0.0029 15 6 2.7829 -8.4791 0.0030 16 6 2.2668 -9.7266 0.0037 17 6 3.1624 -10.8928 0.0044 18 6 4.5502 -10.7142 -0.0016 19 6 5.3829 -11.8120 0.0058 20 6 4.8513 -13.0909 0.0060 21 6 3.4814 -13.2790 0.0056 22 6 2.6312 -12.1891 0.0046 23 9 1.2928 -12.3734 0.0037 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8717 -3.6045 0.8906 28 1 2.8717 -3.6045 -0.8893 29 1 0.8530 -5.0451 -0.8886 30 1 0.8535 -5.0445 0.8914 31 1 3.8535 -8.3376 0.0026 32 1 1.1960 -9.8680 0.0045 33 1 4.9676 -9.7181 -0.0071 34 1 6.4542 -11.6747 0.0065 35 1 5.5106 -13.9463 0.0069 36 1 3.0750 -14.2795 0.0062 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912958628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:04 Heat of formation + Delta-G solvation = -125.025951 kcal Electronic energy + Delta-G solvation = -19412.663716 eV Core-core repulsion = 15968.444875 eV Total energy + Delta-G solvation = -3444.218841 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.03451 -41.58487 -40.00378 -38.09610 -35.93549 -35.38182 -33.67912 -31.58853 -31.01107 -29.04572 -26.31186 -24.91889 -23.79557 -22.72725 -22.20560 -20.53011 -19.34962 -18.65400 -18.34258 -17.76190 -17.74356 -16.82252 -16.75465 -16.73289 -16.48684 -15.65284 -15.23924 -14.94070 -14.78999 -14.22699 -14.12253 -13.96027 -13.83207 -13.56824 -13.39254 -12.80580 -12.53915 -12.52681 -12.38096 -12.07823 -12.07655 -11.89644 -11.62187 -11.47242 -11.39441 -11.25392 -10.56990 -9.89852 -9.41078 -8.21645 -6.33583 -0.79467 0.20086 0.65643 1.41511 1.45334 1.53004 1.65847 1.85162 2.41721 2.67838 3.11974 3.13731 3.39853 3.64331 3.87686 3.90636 3.97757 4.05287 4.13897 4.30304 4.31912 4.39683 4.70827 4.78434 4.81608 4.83903 5.02965 5.07063 5.11686 5.18656 5.36976 5.38376 5.42542 5.49926 5.62792 5.79526 5.85671 6.18477 6.63388 6.82233 7.35861 8.90444 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.045360 B = 0.002285 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.141370 B =12251.207880 C =12842.599139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.075 3.925 12 O -0.345 6.345 13 C 0.487 3.513 14 O -0.550 6.550 15 C -0.184 4.184 16 C -0.005 4.005 17 C -0.130 4.130 18 C -0.072 4.072 19 C -0.128 4.128 20 C -0.068 4.068 21 C -0.161 4.161 22 C 0.097 3.903 23 F -0.148 7.148 24 H 0.264 0.736 25 H -0.005 1.005 26 H -0.004 1.004 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.177 0.823 32 H 0.122 0.878 33 H 0.158 0.842 34 H 0.166 0.834 35 H 0.169 0.831 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.222 -29.236 0.007 32.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.012 4.012 10 C -0.130 4.130 11 C 0.001 3.999 12 O -0.261 6.261 13 C 0.336 3.664 14 O -0.443 6.443 15 C -0.203 4.203 16 C -0.023 4.023 17 C -0.131 4.131 18 C -0.089 4.089 19 C -0.146 4.146 20 C -0.085 4.085 21 C -0.180 4.180 22 C 0.078 3.922 23 F -0.126 7.126 24 H 0.073 0.927 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.194 0.806 32 H 0.140 0.860 33 H 0.176 0.824 34 H 0.183 0.817 35 H 0.187 0.813 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 13.664 -29.131 0.007 32.177 hybrid contribution -1.067 1.113 -0.001 1.542 sum 12.597 -28.018 0.006 30.720 Atomic orbital electron populations 1.70105 1.07951 1.28005 1.51389 1.26057 0.95823 1.03665 0.94583 0.85406 0.78152 0.77578 0.79344 1.18957 1.20998 1.18946 1.21598 0.93796 0.91784 1.50972 0.91501 1.18944 0.94300 0.92607 0.95374 1.21459 0.98669 0.90126 1.02715 1.22762 0.91380 0.84193 1.01576 1.86161 1.41404 1.15022 1.83487 1.21938 0.87642 0.84579 0.72277 1.90868 1.18249 1.87314 1.47914 1.22222 1.01007 0.88055 1.08979 1.22285 0.99765 0.91304 0.88976 1.18994 0.94995 0.90516 1.08631 1.21730 0.90212 1.01881 0.95125 1.21631 1.02023 0.91612 0.99307 1.21679 0.93743 0.99088 0.94010 1.21432 0.94411 0.98431 1.03720 1.18286 0.77105 0.94330 1.02481 1.91485 1.31361 1.96057 1.93741 0.92687 0.98614 0.98603 0.91272 0.91262 0.92332 0.92341 0.80585 0.86028 0.82420 0.81666 0.81337 0.82674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 3 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.02 1.34 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.91 5.52 30.59 0.17 -3.74 16 11 C 0.08 2.93 5.38 71.98 0.39 3.31 16 12 O -0.34 -11.82 10.12 -58.34 -0.59 -12.41 16 13 C 0.49 15.67 7.87 69.87 0.55 16.22 16 14 O -0.55 -21.42 16.00 19.38 0.31 -21.11 16 15 C -0.18 -4.09 9.53 23.58 0.22 -3.87 16 16 C 0.00 -0.10 9.26 23.84 0.22 0.12 16 17 C -0.13 -2.21 5.87 -20.11 -0.12 -2.33 16 18 C -0.07 -0.78 9.41 22.57 0.21 -0.57 16 19 C -0.13 -0.84 10.03 22.23 0.22 -0.61 16 20 C -0.07 -0.41 10.04 22.34 0.22 -0.19 16 21 C -0.16 -1.73 10.01 22.27 0.22 -1.50 16 22 C 0.10 1.66 7.30 22.72 0.17 1.83 16 23 F -0.15 -3.16 16.62 44.97 0.75 -2.41 16 24 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 25 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 26 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 27 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 30 H 0.06 2.33 8.13 -2.38 -0.02 2.31 16 31 H 0.18 2.60 6.08 -2.91 -0.02 2.58 16 32 H 0.12 3.08 7.20 -2.91 -0.02 3.06 16 33 H 0.16 1.13 6.17 -2.91 -0.02 1.11 16 34 H 0.17 0.11 8.06 -2.91 -0.02 0.09 16 35 H 0.17 -0.07 8.06 -2.91 -0.02 -0.10 16 36 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -72.65 325.14 7.19 -65.47 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: 1.08 Total: 1.92 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 3.32 Total: -20.44 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.28 Total: -57.32 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.28 Total: -33.52 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.75 Total: -2.41 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -72.65 7.19 -65.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.560 kcal (2) G-P(sol) polarization free energy of solvation -72.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds