Wall clock time and date at job start Mon Mar 30 2020 23:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99565 * 2 1 4 4 H 1.48503 * 109.46769 * 239.99955 * 3 2 1 5 5 H 1.48491 * 109.47406 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47168 * 119.99908 * 3 2 1 7 7 C 1.37872 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00062 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47416 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47140 * 180.02562 * 10 9 7 12 12 O 1.42896 * 109.47137 * 180.02562 * 11 10 9 13 13 C 1.34925 * 117.00177 * 180.02562 * 12 11 10 14 14 O 1.21631 * 119.99728 * 359.97438 * 13 12 11 15 15 C 1.46134 * 120.00092 * 179.97438 * 13 12 11 16 16 C 1.35004 * 119.99921 * 173.26218 * 15 13 12 17 17 C 1.47046 * 120.00314 * 349.66504 * 16 15 13 18 18 C 1.39916 * 120.18968 * 315.10736 * 17 16 15 19 19 C 1.37794 * 119.84936 * 179.76654 * 18 17 16 20 20 C 1.38496 * 120.24298 * 0.50581 * 19 18 17 21 21 C 1.38266 * 120.39149 * 359.74691 * 20 19 18 22 22 C 1.38227 * 120.14415 * 359.97438 * 21 20 19 23 23 F 1.35098 * 120.12454 * 179.97438 * 22 21 20 24 24 H 0.96998 * 120.00721 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46513 * 59.99918 * 9 7 2 26 26 H 1.09002 * 109.47282 * 300.00820 * 9 7 2 27 27 H 1.09004 * 109.46483 * 60.00804 * 10 9 7 28 28 H 1.08994 * 109.47576 * 300.00454 * 10 9 7 29 29 H 1.08995 * 109.46991 * 60.00139 * 11 10 9 30 30 H 1.08999 * 109.47172 * 300.00135 * 11 10 9 31 31 H 1.08005 * 119.99895 * 352.98694 * 15 13 12 32 32 H 1.07996 * 119.99872 * 169.65701 * 16 15 13 33 33 H 1.08004 * 120.07050 * 359.97438 * 18 17 16 34 34 H 1.08000 * 119.87990 * 180.24637 * 19 18 17 35 35 H 1.07997 * 119.80463 * 179.76007 * 20 19 18 36 36 H 1.07997 * 119.93061 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4805 -4.9870 0.0020 12 8 2.4091 -6.0731 0.0024 13 6 1.8935 -7.3200 0.0023 14 8 0.6876 -7.4794 0.0025 15 6 2.7837 -8.4789 0.0021 16 6 2.2742 -9.7215 0.1393 17 6 0.8637 -9.9006 0.5145 18 6 0.3070 -9.1348 1.5447 19 6 -1.0167 -9.3049 1.8873 20 6 -1.7949 -10.2383 1.2228 21 6 -1.2536 -11.0041 0.2068 22 6 0.0709 -10.8427 -0.1539 23 9 0.5995 -11.5915 -1.1464 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5574 -0.8881 26 1 0.6248 -2.5563 0.8919 27 1 2.8727 -3.6038 0.8911 28 1 2.8715 -3.6047 -0.8889 29 1 0.8535 -5.0449 -0.8877 30 1 0.8542 -5.0447 0.8922 31 1 3.8489 -8.3415 -0.1122 32 1 2.9024 -10.5841 -0.0268 33 1 0.9127 -8.4096 2.0678 34 1 -1.4480 -8.7113 2.6797 35 1 -2.8306 -10.3685 1.4998 36 1 -1.8673 -11.7294 -0.3067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912958629.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:07 Heat of formation + Delta-G solvation = -111.014269 kcal Electronic energy + Delta-G solvation = -20272.768810 eV Core-core repulsion = 16829.157561 eV Total energy + Delta-G solvation = -3443.611249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.95178 -41.68963 -39.86621 -37.95511 -35.92967 -35.08142 -33.67408 -31.56216 -30.90487 -29.03679 -26.20744 -24.80284 -23.63779 -23.05682 -22.19383 -20.57560 -19.18925 -18.69316 -18.34500 -17.67007 -17.44429 -17.24185 -16.66310 -16.50374 -16.07053 -15.68822 -15.23183 -14.93637 -14.74013 -14.24812 -14.19706 -13.92081 -13.80032 -13.65365 -13.21518 -12.79812 -12.69503 -12.53265 -12.37828 -12.13821 -12.01533 -11.74230 -11.43479 -11.37514 -11.24844 -11.02798 -10.57352 -9.69293 -9.36177 -8.22184 -6.34069 -0.54831 0.24958 0.61545 1.41139 1.44523 1.52380 1.77428 1.91036 2.41346 2.65952 3.11480 3.20634 3.52222 3.73585 3.81681 3.99649 4.04273 4.07695 4.27379 4.33218 4.41263 4.46779 4.77627 4.79059 4.79326 4.91565 5.02804 5.07555 5.11127 5.19713 5.35968 5.43259 5.48270 5.54550 5.62871 5.79292 5.91738 6.18560 6.73690 6.82012 7.35527 8.89855 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033685 B = 0.002914 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.021611 B = 9607.204312 C =10108.619461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.027 3.973 10 C -0.094 4.094 11 C 0.080 3.920 12 O -0.351 6.351 13 C 0.475 3.525 14 O -0.524 6.524 15 C -0.185 4.185 16 C -0.004 4.004 17 C -0.129 4.129 18 C -0.035 4.035 19 C -0.149 4.149 20 C -0.077 4.077 21 C -0.171 4.171 22 C 0.098 3.902 23 F -0.142 7.142 24 H 0.265 0.735 25 H -0.005 1.005 26 H -0.003 1.003 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.180 0.820 32 H 0.183 0.817 33 H 0.117 0.883 34 H 0.142 0.858 35 H 0.160 0.840 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.260 -24.611 2.829 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.010 4.010 10 C -0.131 4.131 11 C 0.006 3.994 12 O -0.267 6.267 13 C 0.323 3.677 14 O -0.415 6.415 15 C -0.203 4.203 16 C -0.021 4.021 17 C -0.130 4.130 18 C -0.053 4.053 19 C -0.167 4.167 20 C -0.094 4.094 21 C -0.189 4.189 22 C 0.079 3.921 23 F -0.120 7.120 24 H 0.073 0.927 25 H 0.013 0.987 26 H 0.015 0.985 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.198 0.802 32 H 0.200 0.800 33 H 0.135 0.865 34 H 0.159 0.841 35 H 0.177 0.823 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.775 -24.526 2.787 24.748 hybrid contribution -0.080 1.116 -0.304 1.159 sum 1.695 -23.410 2.483 23.603 Atomic orbital electron populations 1.70091 1.07891 1.28025 1.51362 1.26015 0.95795 1.03532 0.94536 0.85442 0.78211 0.77741 0.79312 1.19082 1.20880 1.18961 1.21607 0.93759 0.91918 1.51047 0.91678 1.18922 0.94238 0.92515 0.95358 1.21460 0.98687 0.90530 1.02456 1.22657 0.91228 0.84136 1.01415 1.86186 1.41648 1.15357 1.83540 1.22204 0.88220 0.84414 0.72881 1.90934 1.17559 1.86531 1.46491 1.22535 1.01118 0.88192 1.08500 1.22762 0.92617 0.97718 0.89045 1.19183 0.95342 0.98842 0.99658 1.21113 0.95972 0.93940 0.94305 1.21365 0.93782 0.99662 1.01873 1.21437 1.01095 0.93439 0.93469 1.21313 0.93358 1.03547 1.00696 1.17966 0.93161 0.92487 0.88495 1.91466 1.86909 1.74530 1.59106 0.92650 0.98706 0.98461 0.91417 0.91683 0.92689 0.92134 0.80238 0.80011 0.86505 0.84063 0.82255 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.55 -31.07 9.11 25.60 0.23 -30.84 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.09 -3.94 5.52 30.59 0.17 -3.77 16 11 C 0.08 3.00 5.38 71.98 0.39 3.39 16 12 O -0.35 -11.56 10.12 -58.41 -0.59 -12.15 16 13 C 0.47 14.00 6.96 69.87 0.49 14.49 16 14 O -0.52 -17.84 11.92 19.41 0.23 -17.61 16 15 C -0.19 -3.68 10.05 23.58 0.24 -3.45 16 16 C 0.00 -0.06 9.47 23.84 0.23 0.16 16 17 C -0.13 -2.94 4.51 -20.11 -0.09 -3.03 16 18 C -0.04 -0.83 6.60 22.57 0.15 -0.68 16 19 C -0.15 -3.09 10.02 22.23 0.22 -2.87 16 20 C -0.08 -1.35 10.04 22.34 0.22 -1.13 16 21 C -0.17 -3.22 10.01 22.27 0.22 -2.99 16 22 C 0.10 2.18 7.30 22.72 0.17 2.35 16 23 F -0.14 -3.13 16.84 44.97 0.76 -2.37 16 24 H 0.26 15.19 8.31 -92.71 -0.77 14.41 16 25 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 27 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 28 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 30 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 31 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.12 2.81 7.10 -2.91 -0.02 2.79 16 34 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -69.33 320.69 7.02 -62.31 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 1.07 Total: 6.88 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 3.24 Total: -26.38 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.28 Total: -56.76 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.36 Total: -29.76 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.76 Total: -2.37 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -69.33 7.02 -62.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958629.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.707 kcal (2) G-P(sol) polarization free energy of solvation -69.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds