Wall clock time and date at job start Mon Mar 30 2020 23:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99951 * 2 1 4 4 H 1.48499 * 109.46657 * 239.99994 * 3 2 1 5 5 H 1.48496 * 109.46732 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47231 * 119.99842 * 3 2 1 7 7 C 1.37884 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47240 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.47397 * 179.97438 * 10 9 7 12 12 C 1.34751 * 117.00516 * 180.02562 * 11 10 9 13 13 O 1.21514 * 119.99699 * 359.97438 * 12 11 10 14 14 C 1.47445 * 120.00260 * 179.97438 * 12 11 10 15 15 C 1.39816 * 120.07973 * 0.25063 * 14 12 11 16 16 C 1.37638 * 119.92108 * 180.23236 * 15 14 12 17 17 C 1.39153 * 120.07435 * 359.51535 * 16 15 14 18 18 N 1.39398 * 119.91726 * 180.27856 * 17 16 15 19 19 C 1.34780 * 120.00553 * 144.84104 * 18 17 16 20 20 N 1.34773 * 120.00610 * 184.58039 * 19 18 17 21 21 O 1.21582 * 119.99537 * 4.57351 * 19 18 17 22 22 C 1.39155 * 120.16330 * 0.24977 * 17 16 15 23 23 C 1.37635 * 120.07679 * 359.97438 * 22 17 16 24 24 H 0.96999 * 120.00031 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47219 * 59.99387 * 9 7 2 26 26 H 1.09009 * 109.46914 * 299.99981 * 9 7 2 27 27 H 1.09003 * 109.47226 * 59.99921 * 10 9 7 28 28 H 1.08995 * 109.47203 * 299.99828 * 10 9 7 29 29 H 1.08006 * 120.03966 * 359.97438 * 15 14 12 30 30 H 1.07995 * 119.96206 * 179.78840 * 16 15 14 31 31 H 0.97006 * 120.00113 * 324.84190 * 18 17 16 32 32 H 0.96997 * 119.99444 * 359.97438 * 20 19 18 33 33 H 0.96996 * 120.00025 * 179.97438 * 20 19 18 34 34 H 1.07998 * 119.95831 * 180.02562 * 22 17 16 35 35 H 1.08000 * 120.03769 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5194 -4.9196 0.0011 12 6 2.2533 -6.0497 0.0018 13 8 3.4668 -5.9861 0.0013 14 6 1.5840 -7.3634 0.0030 15 6 0.1878 -7.4386 -0.0018 16 6 -0.4336 -8.6667 0.0042 17 6 0.3260 -9.8326 0.0048 18 7 -0.3068 -11.0747 0.0050 19 6 0.2376 -12.1086 -0.6666 20 7 -0.4192 -13.2830 -0.7437 21 8 1.3213 -11.9819 -1.2030 22 6 1.7157 -9.7617 0.0046 23 6 2.3439 -8.5371 0.0033 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8721 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 -0.4023 -6.5340 -0.0060 30 1 -1.5120 -8.7255 0.0040 31 1 -1.1392 -11.1949 0.4885 32 1 -1.2836 -13.3841 -0.3155 33 1 -0.0274 -14.0269 -1.2274 34 1 2.3020 -10.6687 0.0047 35 1 3.4225 -8.4828 0.0027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916599272.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:02 Heat of formation + Delta-G solvation = -96.877979 kcal Electronic energy + Delta-G solvation = -20031.396945 eV Core-core repulsion = 16608.318653 eV Total energy + Delta-G solvation = -3423.078292 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01396 -39.93384 -38.43734 -36.02090 -35.06307 -34.11791 -33.31435 -31.16123 -30.51893 -29.60261 -25.32451 -24.09116 -23.05608 -21.67577 -21.04679 -20.43762 -18.87769 -18.44062 -17.66000 -16.71482 -16.27736 -16.00743 -15.84077 -15.71335 -15.00375 -14.66466 -14.44803 -14.31794 -13.53605 -13.43778 -13.17697 -12.74497 -12.38894 -12.32523 -11.46525 -11.20757 -11.02136 -10.82365 -10.70487 -10.68387 -10.47796 -10.24817 -10.17475 -9.60181 -9.59246 -9.29265 -9.11005 -8.42917 -8.39607 -6.08607 -4.12668 0.65857 1.29916 2.28440 2.54009 2.91713 3.22298 3.31941 3.35685 3.40454 3.79028 3.90661 4.41121 4.69582 4.83868 5.07231 5.19987 5.27468 5.27971 5.40675 5.87304 5.89815 6.01231 6.13986 6.14848 6.22772 6.28137 6.37710 6.40503 6.67480 6.77618 7.01490 7.32995 7.58161 7.64955 7.89026 8.04256 8.22310 8.30416 8.92656 9.51496 11.02905 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.051588 B = 0.002657 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.634851 B =10537.050649 C =10983.413340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.353 6.353 12 C 0.501 3.499 13 O -0.517 6.517 14 C -0.135 4.135 15 C -0.039 4.039 16 C -0.160 4.160 17 C 0.187 3.813 18 N -0.683 5.683 19 C 0.704 3.296 20 N -0.861 5.861 21 O -0.571 6.571 22 C -0.135 4.135 23 C -0.038 4.038 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.147 0.853 30 H 0.133 0.867 31 H 0.409 0.591 32 H 0.399 0.601 33 H 0.419 0.581 34 H 0.147 0.853 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.691 -26.301 1.326 26.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.269 6.269 12 C 0.346 3.654 13 O -0.407 6.407 14 C -0.137 4.137 15 C -0.058 4.058 16 C -0.181 4.181 17 C 0.091 3.909 18 N -0.331 5.331 19 C 0.403 3.597 20 N -0.430 5.430 21 O -0.447 6.447 22 C -0.156 4.156 23 C -0.057 4.057 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.165 0.835 30 H 0.151 0.849 31 H 0.245 0.755 32 H 0.227 0.773 33 H 0.252 0.748 34 H 0.165 0.835 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.599 -25.911 0.898 26.331 hybrid contribution -0.223 0.518 0.216 0.604 sum -4.822 -25.393 1.114 25.870 Atomic orbital electron populations 1.69960 1.06083 1.27068 1.49808 1.24981 0.94921 0.99365 0.94883 0.86529 0.79480 0.82470 0.78799 1.20064 1.21151 1.20063 1.20952 0.93178 0.90137 1.52179 0.92284 1.19162 0.94190 0.88994 0.98856 1.23656 0.96404 0.78583 1.01044 1.86565 1.41969 1.15616 1.82786 1.21051 0.85683 0.85510 0.73131 1.90798 1.15105 1.88386 1.46458 1.19306 0.93965 0.90911 1.09477 1.21361 0.93368 0.98114 0.92981 1.20832 0.99988 0.90770 1.06521 1.17710 0.91935 0.83520 0.97729 1.42452 1.28016 1.08805 1.53845 1.15950 0.84010 0.80554 0.79166 1.42961 1.24925 1.13657 1.61421 1.91018 1.20411 1.82218 1.51045 1.21206 0.92908 0.98713 1.02730 1.21189 1.00824 0.90114 0.93556 0.92679 0.95337 0.95334 0.92243 0.92234 0.83480 0.84890 0.75499 0.77298 0.74822 0.83502 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.66 5.35 -27.89 -0.15 0.51 16 10 C 0.08 1.72 5.41 37.15 0.20 1.93 16 11 O -0.35 -7.27 9.46 -40.63 -0.38 -7.66 16 12 C 0.50 9.50 7.89 34.48 0.27 9.78 16 13 O -0.52 -10.93 16.13 -19.28 -0.31 -11.24 16 14 C -0.13 -2.04 5.87 -104.97 -0.62 -2.66 16 15 C -0.04 -0.50 9.60 -39.21 -0.38 -0.88 16 16 C -0.16 -1.59 9.94 -39.46 -0.39 -1.98 16 17 C 0.19 1.93 6.30 -83.74 -0.53 1.40 16 18 N -0.68 -4.79 5.32 -14.22 -0.08 -4.86 16 19 C 0.70 5.95 8.67 -86.92 -0.75 5.20 16 20 N -0.86 -3.10 8.88 27.63 0.25 -2.85 16 21 O -0.57 -7.53 14.59 5.29 0.08 -7.45 16 22 C -0.14 -1.67 8.66 -39.46 -0.34 -2.01 16 23 C -0.04 -0.52 9.58 -39.21 -0.38 -0.90 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.15 1.82 7.60 -52.48 -0.40 1.43 16 30 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.41 1.28 8.83 -40.82 -0.36 0.92 16 32 H 0.40 0.09 8.85 -40.82 -0.36 -0.27 16 33 H 0.42 1.20 8.93 -40.82 -0.36 0.83 16 34 H 0.15 1.85 6.20 -52.49 -0.33 1.53 16 35 H 0.14 1.90 7.64 -52.49 -0.40 1.50 16 LS Contribution 315.11 15.07 4.75 4.75 Total: -1.00 -35.68 315.11 -7.32 -43.00 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -3.87 Total: -1.28 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -3.47 Total: -3.23 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.91 Total: -33.43 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.62 Total: -26.35 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.68 -7.32 -43.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916599272.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.875 kcal (2) G-P(sol) polarization free energy of solvation -35.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds