Wall clock time and date at job start Mon Mar 30 2020 23:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99951 * 2 1 4 4 H 1.48499 * 109.46657 * 239.99994 * 3 2 1 5 5 H 1.48496 * 109.46732 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47231 * 119.99842 * 3 2 1 7 7 C 1.37884 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47240 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.47397 * 179.97438 * 10 9 7 12 12 C 1.34751 * 117.00516 * 180.02562 * 11 10 9 13 13 O 1.21514 * 119.99699 * 359.97438 * 12 11 10 14 14 C 1.47445 * 120.00260 * 179.97438 * 12 11 10 15 15 C 1.39816 * 120.07973 * 0.25063 * 14 12 11 16 16 C 1.37638 * 119.92108 * 180.23236 * 15 14 12 17 17 C 1.39153 * 120.07435 * 359.51535 * 16 15 14 18 18 N 1.39398 * 119.91726 * 180.27856 * 17 16 15 19 19 C 1.34780 * 120.00553 * 144.84104 * 18 17 16 20 20 N 1.34773 * 120.00610 * 184.58039 * 19 18 17 21 21 O 1.21582 * 119.99537 * 4.57351 * 19 18 17 22 22 C 1.39155 * 120.16330 * 0.24977 * 17 16 15 23 23 C 1.37635 * 120.07679 * 359.97438 * 22 17 16 24 24 H 0.96999 * 120.00031 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47219 * 59.99387 * 9 7 2 26 26 H 1.09009 * 109.46914 * 299.99981 * 9 7 2 27 27 H 1.09003 * 109.47226 * 59.99921 * 10 9 7 28 28 H 1.08995 * 109.47203 * 299.99828 * 10 9 7 29 29 H 1.08006 * 120.03966 * 359.97438 * 15 14 12 30 30 H 1.07995 * 119.96206 * 179.78840 * 16 15 14 31 31 H 0.97006 * 120.00113 * 324.84190 * 18 17 16 32 32 H 0.96997 * 119.99444 * 359.97438 * 20 19 18 33 33 H 0.96996 * 120.00025 * 179.97438 * 20 19 18 34 34 H 1.07998 * 119.95831 * 180.02562 * 22 17 16 35 35 H 1.08000 * 120.03769 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5194 -4.9196 0.0011 12 6 2.2533 -6.0497 0.0018 13 8 3.4668 -5.9861 0.0013 14 6 1.5840 -7.3634 0.0030 15 6 0.1878 -7.4386 -0.0018 16 6 -0.4336 -8.6667 0.0042 17 6 0.3260 -9.8326 0.0048 18 7 -0.3068 -11.0747 0.0050 19 6 0.2376 -12.1086 -0.6666 20 7 -0.4192 -13.2830 -0.7437 21 8 1.3213 -11.9819 -1.2030 22 6 1.7157 -9.7617 0.0046 23 6 2.3439 -8.5371 0.0033 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8721 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 -0.4023 -6.5340 -0.0060 30 1 -1.5120 -8.7255 0.0040 31 1 -1.1392 -11.1949 0.4885 32 1 -1.2836 -13.3841 -0.3155 33 1 -0.0274 -14.0269 -1.2274 34 1 2.3020 -10.6687 0.0047 35 1 3.4225 -8.4828 0.0027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916599272.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:01 Heat of formation + Delta-G solvation = -122.893092 kcal Electronic energy + Delta-G solvation = -20032.525045 eV Core-core repulsion = 16608.318653 eV Total energy + Delta-G solvation = -3424.206392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.86527 -41.30251 -39.45778 -37.65029 -35.91803 -35.43810 -34.68373 -32.46676 -32.04589 -30.77612 -27.20003 -25.31552 -24.10299 -22.98033 -22.45215 -21.73901 -19.60264 -19.11725 -19.06514 -18.34831 -17.80915 -17.50841 -16.97537 -16.55906 -16.47989 -15.82435 -15.57763 -15.20391 -15.13846 -14.62049 -14.44757 -14.34560 -13.83405 -13.66159 -13.13620 -13.04164 -12.61188 -12.58078 -12.36594 -11.92212 -11.67282 -11.55075 -11.48027 -11.40556 -11.24270 -10.73974 -10.59913 -10.06506 -9.29068 -8.26285 -6.39236 -0.42531 0.34983 1.39699 1.41354 1.45282 1.52669 1.66963 1.74012 2.03983 2.41032 2.76112 3.07954 3.45860 3.67757 3.84159 3.93319 4.22494 4.22982 4.26514 4.33338 4.50176 4.68799 4.95666 5.03818 5.13652 5.23231 5.29711 5.38075 5.47777 5.52582 5.74328 5.78561 5.86767 5.94651 6.07555 6.69213 6.74545 6.91206 7.30099 7.49488 8.86107 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.051588 B = 0.002657 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.634851 B =10537.050649 C =10983.413340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.090 3.910 11 O -0.356 6.356 12 C 0.500 3.500 13 O -0.547 6.547 14 C -0.162 4.162 15 C -0.040 4.040 16 C -0.144 4.144 17 C 0.202 3.798 18 N -0.667 5.667 19 C 0.699 3.301 20 N -0.835 5.835 21 O -0.622 6.622 22 C -0.143 4.143 23 C -0.042 4.042 24 H 0.268 0.732 25 H 0.008 0.992 26 H 0.009 0.991 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.148 0.852 30 H 0.175 0.825 31 H 0.432 0.568 32 H 0.419 0.581 33 H 0.426 0.574 34 H 0.143 0.857 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 -27.625 1.545 28.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.590 4.590 8 H 0.082 0.918 9 C -0.004 4.004 10 C 0.017 3.983 11 O -0.273 6.273 12 C 0.348 3.652 13 O -0.439 6.439 14 C -0.164 4.164 15 C -0.058 4.058 16 C -0.164 4.164 17 C 0.105 3.895 18 N -0.317 5.317 19 C 0.397 3.603 20 N -0.405 5.405 21 O -0.502 6.502 22 C -0.163 4.163 23 C -0.061 4.061 24 H 0.077 0.923 25 H 0.027 0.973 26 H 0.028 0.972 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.166 0.834 30 H 0.193 0.807 31 H 0.272 0.728 32 H 0.251 0.749 33 H 0.260 0.740 34 H 0.161 0.839 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.038 -27.306 1.143 27.989 hybrid contribution 0.089 0.706 0.148 0.726 sum -5.949 -26.601 1.290 27.288 Atomic orbital electron populations 1.70077 1.07728 1.28352 1.50271 1.25948 0.95873 1.03323 0.94059 0.85386 0.78214 0.77497 0.79268 1.19176 1.20343 1.19088 1.21345 0.93686 0.91294 1.52670 0.91827 1.18966 0.94260 0.90314 0.96872 1.23207 0.95233 0.78920 1.00967 1.86548 1.41926 1.15496 1.83310 1.21751 0.85541 0.85993 0.71920 1.90770 1.16343 1.88655 1.48170 1.19157 0.95162 0.88843 1.13226 1.21463 0.92171 0.99552 0.92664 1.21122 1.01842 0.89090 1.04365 1.17793 0.91332 0.85104 0.95295 1.42279 1.28486 1.07351 1.53555 1.16194 0.83608 0.81581 0.78904 1.42751 1.25277 1.12059 1.60377 1.91001 1.22828 1.83184 1.53141 1.21212 0.94164 0.97704 1.03267 1.21130 1.00551 0.90368 0.94011 0.92286 0.97332 0.97211 0.92209 0.92352 0.83404 0.80738 0.72800 0.74933 0.74048 0.83894 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.55 -31.80 9.11 25.60 0.23 -31.56 16 8 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.80 5.35 29.84 0.16 1.96 16 10 C 0.09 4.23 5.41 71.98 0.39 4.62 16 11 O -0.36 -15.14 9.46 -56.61 -0.54 -15.67 16 12 C 0.50 19.62 7.89 70.25 0.55 20.17 16 13 O -0.55 -24.06 16.13 19.79 0.32 -23.74 16 14 C -0.16 -4.97 5.87 -20.09 -0.12 -5.09 16 15 C -0.04 -0.96 9.60 22.51 0.22 -0.74 16 16 C -0.14 -2.41 9.94 22.35 0.22 -2.19 16 17 C 0.20 3.68 6.30 38.38 0.24 3.92 16 18 N -0.67 -7.12 5.32 -317.17 -1.69 -8.81 16 19 C 0.70 10.06 8.67 179.05 1.55 11.61 16 20 N -0.84 -3.38 8.88 -184.75 -1.64 -5.02 16 21 O -0.62 -15.72 14.59 -3.98 -0.06 -15.78 16 22 C -0.14 -3.43 8.66 22.35 0.19 -3.24 16 23 C -0.04 -1.17 9.58 22.51 0.22 -0.95 16 24 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 25 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.15 3.54 7.60 -2.91 -0.02 3.52 16 30 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 31 H 0.43 0.75 8.83 -92.70 -0.82 -0.07 16 32 H 0.42 -1.48 8.85 -92.71 -0.82 -2.30 16 33 H 0.43 1.27 8.93 -92.71 -0.83 0.44 16 34 H 0.14 3.60 6.20 -2.91 -0.02 3.58 16 35 H 0.13 3.80 7.64 -2.91 -0.02 3.77 16 Total: -1.00 -79.26 315.11 1.73 -77.53 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -1.30 Total: 1.31 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 4.32 Total: -0.63 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: -3.04 Total: -69.06 kcal Atomic # 8 Polarization: -54.93 SS G_CDS: -0.27 Total: -55.20 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -79.26 1.73 -77.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916599272.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.366 kcal (2) G-P(sol) polarization free energy of solvation -79.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds