Wall clock time and date at job start Mon Mar 30 2020 23:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00075 * 2 1 4 4 H 1.48502 * 109.47210 * 270.00426 * 3 2 1 5 5 H 1.48503 * 109.46966 * 30.00007 * 3 2 1 6 6 H 1.48494 * 109.47357 * 150.00148 * 3 2 1 7 7 C 1.38702 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00167 * 359.97438 * 7 2 1 9 9 O 1.34814 * 119.99938 * 179.97438 * 7 2 1 10 10 C 1.35512 * 117.00194 * 185.04264 * 9 7 2 11 11 C 1.38835 * 120.16382 * 354.58918 * 10 9 7 12 12 C 1.38023 * 120.07697 * 180.02562 * 11 10 9 13 13 C 1.38564 * 120.39953 * 359.97438 * 12 11 10 14 14 C 1.37827 * 120.32927 * 359.97438 * 13 12 11 15 15 C 1.39670 * 119.91300 * 0.02562 * 14 13 12 16 16 C 1.47541 * 120.19391 * 180.02562 * 15 14 13 17 17 O 1.21587 * 119.99721 * 215.09557 * 16 15 14 18 18 N 1.34771 * 120.00089 * 35.09242 * 16 15 14 19 19 C 1.47101 * 120.84477 * 175.40271 * 18 16 15 20 20 C 1.53424 * 108.22340 * 230.58799 * 19 18 16 21 21 O 1.43161 * 108.68960 * 310.62583 * 20 19 18 22 22 C 1.42975 * 113.78625 * 58.71148 * 21 20 19 23 23 N 1.37123 * 120.84659 * 355.12483 * 18 16 15 24 24 H 0.96993 * 120.00278 * 359.97438 * 1 2 3 25 25 H 1.08007 * 119.96158 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.79636 * 179.72453 * 12 11 10 27 27 H 1.08001 * 119.83861 * 179.97438 * 13 12 11 28 28 H 1.07999 * 120.04363 * 180.02562 * 14 13 12 29 29 H 1.08996 * 109.71429 * 350.27178 * 19 18 16 30 30 H 1.09008 * 109.71708 * 110.90549 * 19 18 16 31 31 H 1.09001 * 109.59351 * 70.38285 * 20 19 18 32 32 H 1.08999 * 109.60128 * 190.85813 * 20 19 18 33 33 H 1.09002 * 109.47646 * 59.04166 * 22 21 20 34 34 H 1.09004 * 109.47376 * 179.04015 * 22 21 20 35 35 H 1.00897 * 110.99664 * 250.22794 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0087 -1.2012 -0.0005 8 1 1.4688 -2.1364 -0.0005 9 8 3.3568 -1.2012 -0.0011 10 6 3.9721 -2.4039 -0.1077 11 6 3.2241 -3.5734 -0.0972 12 6 3.8526 -4.7975 -0.2054 13 6 5.2311 -4.8696 -0.3256 14 6 5.9898 -3.7190 -0.3389 15 6 5.3677 -2.4733 -0.2302 16 6 6.1737 -1.2376 -0.2443 17 8 5.8395 -0.2860 0.4348 18 7 7.2804 -1.1636 -1.0099 19 6 8.0415 0.0907 -1.1162 20 6 8.2588 0.3954 -2.6041 21 8 8.7645 -0.7810 -3.2442 22 6 7.9024 -1.9158 -3.1294 23 7 7.7288 -2.2572 -1.7051 24 1 -0.4850 0.8400 0.0004 25 1 2.1491 -3.5254 -0.0043 26 1 3.2667 -5.7046 -0.1923 27 1 5.7136 -5.8323 -0.4092 28 1 7.0639 -3.7806 -0.4331 29 1 7.4799 0.9019 -0.6530 30 1 9.0052 -0.0206 -0.6192 31 1 7.3113 0.6816 -3.0608 32 1 8.9783 1.2073 -2.7098 33 1 6.9333 -1.6821 -3.5704 34 1 8.3451 -2.7630 -3.6533 35 1 8.5861 -2.6114 -1.3080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928954486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:41 Heat of formation + Delta-G solvation = -27.096889 kcal Electronic energy + Delta-G solvation = -22120.060355 eV Core-core repulsion = 18700.007998 eV Total energy + Delta-G solvation = -3420.052356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51945 -39.19645 -37.81480 -36.46619 -35.32629 -32.44144 -32.28634 -30.66575 -29.14704 -28.16549 -25.40067 -25.19469 -23.69013 -21.95378 -21.23939 -19.88779 -18.04784 -17.73667 -17.13596 -16.63116 -16.45050 -15.88981 -15.23049 -15.00447 -14.88297 -14.38306 -14.10579 -13.82647 -13.68297 -13.47068 -12.96490 -12.67581 -12.32757 -12.16291 -11.82648 -11.43634 -11.31594 -11.18422 -10.79003 -10.74720 -10.48957 -10.12690 -9.83041 -9.51687 -8.98547 -8.88800 -8.70016 -8.22239 -7.41064 -6.45231 -4.10660 1.71591 2.30670 2.62970 3.26250 3.30236 3.34220 3.59139 3.60598 4.08370 4.31024 4.53658 4.71640 4.80403 4.84871 4.92876 5.09747 5.28191 5.34774 5.36571 5.54743 5.59435 5.66969 5.80717 6.00391 6.17436 6.30118 6.51199 6.68341 6.80603 6.91472 6.99371 7.10750 7.24970 7.57211 7.71892 7.92807 7.98764 8.65723 8.90350 9.53336 10.60877 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015856 B = 0.007479 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.470024 B = 3742.878015 C = 5057.492326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.070 3.930 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.240 1.240 7 C -0.393 4.393 8 H 0.109 0.891 9 O -0.186 6.186 10 C 0.200 3.800 11 C -0.232 4.232 12 C -0.051 4.051 13 C -0.227 4.227 14 C -0.010 4.010 15 C -0.213 4.213 16 C 0.597 3.403 17 O -0.516 6.516 18 N -0.477 5.477 19 C 0.054 3.946 20 C 0.047 3.953 21 O -0.411 6.411 22 C 0.201 3.799 23 N -0.442 5.442 24 H 0.281 0.719 25 H 0.136 0.864 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.055 -4.766 -5.107 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.163 1.163 7 C -0.469 4.469 8 H 0.126 0.874 9 O -0.088 6.088 10 C 0.144 3.856 11 C -0.252 4.252 12 C -0.070 4.070 13 C -0.246 4.246 14 C -0.028 4.028 15 C -0.217 4.217 16 C 0.390 3.610 17 O -0.388 6.388 18 N -0.305 5.305 19 C -0.070 4.070 20 C -0.031 4.031 21 O -0.325 6.325 22 C 0.035 3.965 23 N -0.177 5.177 24 H 0.091 0.909 25 H 0.154 0.846 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.145 0.855 29 H 0.127 0.873 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 15.247 -4.052 -4.874 16.512 hybrid contribution 0.701 1.008 -0.048 1.229 sum 15.947 -3.044 -4.922 16.965 Atomic orbital electron populations 1.69627 1.05674 1.28742 1.46887 1.24454 0.94957 0.98997 0.95033 0.86319 0.81636 0.81078 0.79224 1.20139 1.20848 1.16307 1.20866 0.76932 0.96735 1.52325 0.87399 1.83666 1.22404 1.25366 1.77316 1.19015 0.90166 0.85814 0.90607 1.21200 1.01180 0.91619 1.11153 1.20954 0.94498 0.96609 0.94905 1.20600 0.93875 0.97491 1.12603 1.20934 0.99134 0.90247 0.92526 1.18545 0.90508 0.92880 1.19815 1.18199 0.77669 0.87938 0.77240 1.90836 1.67996 1.39204 1.40740 1.47494 1.27857 1.06547 1.48616 1.22617 0.97338 0.89698 0.97393 1.23065 1.00475 0.87995 0.91561 1.88076 1.47463 1.20488 1.76521 1.24118 0.95432 0.88576 0.88371 1.62340 1.36001 1.18193 1.01162 0.90922 0.84605 0.87073 0.87171 0.85532 0.87329 0.90936 0.92003 0.87682 0.90300 0.86089 0.83333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.47 13.96 55.48 0.77 -24.69 16 2 C 0.07 2.02 5.49 -17.52 -0.10 1.93 16 3 Si 0.89 22.79 28.62 -169.99 -4.86 17.93 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.24 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.39 -11.31 9.95 30.90 0.31 -11.00 16 8 H 0.11 3.10 5.44 -52.49 -0.29 2.82 16 9 O -0.19 -5.13 7.23 -16.90 -0.12 -5.25 16 10 C 0.20 4.77 6.63 -38.60 -0.26 4.52 16 11 C -0.23 -4.98 9.16 -39.44 -0.36 -5.34 16 12 C -0.05 -0.89 10.03 -39.54 -0.40 -1.29 16 13 C -0.23 -3.59 10.02 -39.61 -0.40 -3.99 16 14 C -0.01 -0.16 8.70 -39.20 -0.34 -0.50 16 15 C -0.21 -4.41 5.67 -104.81 -0.59 -5.00 16 16 C 0.60 12.27 7.33 -12.47 -0.09 12.18 16 17 O -0.52 -12.62 15.42 -12.44 -0.19 -12.81 16 18 N -0.48 -7.42 3.26 -60.71 -0.20 -7.62 16 19 C 0.05 0.71 6.76 -3.49 -0.02 0.69 16 20 C 0.05 0.53 7.11 37.38 0.27 0.79 16 21 O -0.41 -4.80 10.88 -35.23 -0.38 -5.18 16 22 C 0.20 2.17 7.73 60.39 0.47 2.64 16 23 N -0.44 -5.36 4.05 -14.18 -0.06 -5.42 16 24 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.14 3.03 5.64 -52.48 -0.30 2.73 16 26 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.13 1.70 6.02 -52.49 -0.32 1.39 16 29 H 0.11 1.60 7.10 -51.93 -0.37 1.23 16 30 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.35 3.32 8.80 -181.00 -1.59 1.72 16 LS Contribution 297.45 15.07 4.48 4.48 Total: -1.00 -33.39 297.45 -7.03 -40.42 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.95 Total: 2.52 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -1.52 Total: -4.38 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.52 Total: -37.73 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.70 Total: -23.24 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.86 Total: 17.93 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.39 -7.03 -40.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928954486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.324 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds