Wall clock time and date at job start Mon Mar 30 2020 23:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00075 * 2 1 4 4 H 1.48502 * 109.47210 * 270.00426 * 3 2 1 5 5 H 1.48503 * 109.46966 * 30.00007 * 3 2 1 6 6 H 1.48494 * 109.47357 * 150.00148 * 3 2 1 7 7 C 1.38702 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00167 * 359.97438 * 7 2 1 9 9 O 1.34814 * 119.99938 * 179.97438 * 7 2 1 10 10 C 1.35512 * 117.00194 * 185.04264 * 9 7 2 11 11 C 1.38835 * 120.16382 * 354.58918 * 10 9 7 12 12 C 1.38023 * 120.07697 * 180.02562 * 11 10 9 13 13 C 1.38564 * 120.39953 * 359.97438 * 12 11 10 14 14 C 1.37827 * 120.32927 * 359.97438 * 13 12 11 15 15 C 1.39670 * 119.91300 * 0.02562 * 14 13 12 16 16 C 1.47541 * 120.19391 * 180.02562 * 15 14 13 17 17 O 1.21587 * 119.99721 * 215.09557 * 16 15 14 18 18 N 1.34771 * 120.00089 * 35.09242 * 16 15 14 19 19 C 1.47101 * 120.84477 * 175.40271 * 18 16 15 20 20 C 1.53424 * 108.22340 * 230.58799 * 19 18 16 21 21 O 1.43161 * 108.68960 * 310.62583 * 20 19 18 22 22 C 1.42975 * 113.78625 * 58.71148 * 21 20 19 23 23 N 1.37123 * 120.84659 * 355.12483 * 18 16 15 24 24 H 0.96993 * 120.00278 * 359.97438 * 1 2 3 25 25 H 1.08007 * 119.96158 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.79636 * 179.72453 * 12 11 10 27 27 H 1.08001 * 119.83861 * 179.97438 * 13 12 11 28 28 H 1.07999 * 120.04363 * 180.02562 * 14 13 12 29 29 H 1.08996 * 109.71429 * 350.27178 * 19 18 16 30 30 H 1.09008 * 109.71708 * 110.90549 * 19 18 16 31 31 H 1.09001 * 109.59351 * 70.38285 * 20 19 18 32 32 H 1.08999 * 109.60128 * 190.85813 * 20 19 18 33 33 H 1.09002 * 109.47646 * 59.04166 * 22 21 20 34 34 H 1.09004 * 109.47376 * 179.04015 * 22 21 20 35 35 H 1.00897 * 110.99664 * 250.22794 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0087 -1.2012 -0.0005 8 1 1.4688 -2.1364 -0.0005 9 8 3.3568 -1.2012 -0.0011 10 6 3.9721 -2.4039 -0.1077 11 6 3.2241 -3.5734 -0.0972 12 6 3.8526 -4.7975 -0.2054 13 6 5.2311 -4.8696 -0.3256 14 6 5.9898 -3.7190 -0.3389 15 6 5.3677 -2.4733 -0.2302 16 6 6.1737 -1.2376 -0.2443 17 8 5.8395 -0.2860 0.4348 18 7 7.2804 -1.1636 -1.0099 19 6 8.0415 0.0907 -1.1162 20 6 8.2588 0.3954 -2.6041 21 8 8.7645 -0.7810 -3.2442 22 6 7.9024 -1.9158 -3.1294 23 7 7.7288 -2.2572 -1.7051 24 1 -0.4850 0.8400 0.0004 25 1 2.1491 -3.5254 -0.0043 26 1 3.2667 -5.7046 -0.1923 27 1 5.7136 -5.8323 -0.4092 28 1 7.0639 -3.7806 -0.4331 29 1 7.4799 0.9019 -0.6530 30 1 9.0052 -0.0206 -0.6192 31 1 7.3113 0.6816 -3.0608 32 1 8.9783 1.2073 -2.7098 33 1 6.9333 -1.6821 -3.5704 34 1 8.3451 -2.7630 -3.6533 35 1 8.5861 -2.6114 -1.3080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928954486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:41 Heat of formation + Delta-G solvation = -51.894957 kcal Electronic energy + Delta-G solvation = -22121.135680 eV Core-core repulsion = 18700.007998 eV Total energy + Delta-G solvation = -3421.127681 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82601 -40.71647 -39.27939 -38.11762 -36.51907 -34.52072 -33.33333 -32.17885 -30.75532 -29.37725 -27.28756 -26.25841 -25.03665 -23.35183 -22.73397 -21.25128 -19.91625 -19.32758 -18.35295 -18.09407 -17.58968 -17.01783 -16.64200 -16.39071 -16.15531 -15.87266 -15.71225 -15.47950 -15.36918 -14.92288 -14.61001 -14.20498 -14.06563 -13.72481 -13.11537 -12.81230 -12.68020 -12.58521 -12.42646 -12.36699 -12.08491 -11.54192 -11.46635 -11.18273 -10.97073 -10.23302 -9.98557 -9.69591 -9.09031 -8.57584 -6.26827 0.18119 0.73532 1.21359 1.24729 1.40312 1.52451 1.81621 2.25340 2.72094 2.76194 3.00440 3.07928 3.19245 3.72641 3.78050 3.95169 4.14874 4.20506 4.31033 4.38180 4.51945 4.57437 4.64364 4.66596 4.70177 4.93227 5.19001 5.33881 5.37530 5.53736 5.61853 5.68246 5.76759 5.87238 6.04497 6.23695 6.61872 6.78965 7.20742 7.57642 8.53434 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015856 B = 0.007479 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.470024 B = 3742.878015 C = 5057.492326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.023 3.977 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.263 1.263 6 H -0.269 1.269 7 C -0.400 4.400 8 H 0.091 0.909 9 O -0.226 6.226 10 C 0.157 3.843 11 C -0.254 4.254 12 C -0.045 4.045 13 C -0.194 4.194 14 C 0.000 4.000 15 C -0.219 4.219 16 C 0.588 3.412 17 O -0.569 6.569 18 N -0.470 5.470 19 C 0.051 3.949 20 C 0.052 3.948 21 O -0.409 6.409 22 C 0.201 3.799 23 N -0.446 5.446 24 H 0.285 0.715 25 H 0.113 0.887 26 H 0.148 0.852 27 H 0.164 0.836 28 H 0.167 0.833 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.045 0.955 32 H 0.137 0.863 33 H 0.058 0.942 34 H 0.162 0.838 35 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.850 -7.241 -6.286 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.774 3.226 4 H -0.195 1.195 5 H -0.187 1.187 6 H -0.194 1.194 7 C -0.476 4.476 8 H 0.108 0.892 9 O -0.131 6.131 10 C 0.105 3.895 11 C -0.274 4.274 12 C -0.063 4.063 13 C -0.212 4.212 14 C -0.018 4.018 15 C -0.224 4.224 16 C 0.381 3.619 17 O -0.445 6.445 18 N -0.294 5.294 19 C -0.073 4.073 20 C -0.026 4.026 21 O -0.324 6.324 22 C 0.036 3.964 23 N -0.183 5.183 24 H 0.095 0.905 25 H 0.131 0.869 26 H 0.166 0.834 27 H 0.182 0.818 28 H 0.184 0.816 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.154 0.846 33 H 0.077 0.923 34 H 0.180 0.820 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 19.113 -6.576 -6.092 21.111 hybrid contribution -0.143 1.396 0.246 1.425 sum 18.970 -5.180 -5.847 20.516 Atomic orbital electron populations 1.69678 1.06402 1.29498 1.49758 1.25052 0.95684 1.01367 0.95556 0.85487 0.79203 0.78745 0.79149 1.19474 1.18730 1.19404 1.20843 0.78162 0.96297 1.52314 0.89168 1.83642 1.21149 1.27370 1.80985 1.19700 0.91870 0.85638 0.92247 1.21249 1.00345 0.92952 1.12815 1.21404 0.95931 0.96042 0.92889 1.21261 0.92926 0.99403 1.07654 1.21444 1.01161 0.88637 0.90583 1.18986 0.89425 0.94976 1.18968 1.18316 0.78771 0.87311 0.77522 1.90810 1.69688 1.40695 1.43318 1.47280 1.26552 1.08408 1.47198 1.22823 0.97577 0.87878 0.98999 1.23100 1.00754 0.88912 0.89804 1.88090 1.47395 1.20559 1.76334 1.24296 0.94999 0.89701 0.87449 1.62241 1.37305 1.17050 1.01699 0.90477 0.86948 0.83402 0.81802 0.81557 0.89671 0.88138 0.93693 0.84576 0.92329 0.82039 0.80911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.07 13.96 21.62 0.30 -55.77 16 2 C 0.02 1.41 5.49 84.85 0.47 1.88 16 3 Si 0.95 49.98 28.62 68.60 1.96 51.94 16 4 H -0.27 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -15.34 7.11 99.48 0.71 -14.63 16 7 C -0.40 -24.65 9.95 67.93 0.68 -23.98 16 8 H 0.09 5.65 5.44 -2.92 -0.02 5.64 16 9 O -0.23 -13.30 7.23 -3.02 -0.02 -13.32 16 10 C 0.16 7.77 6.63 22.91 0.15 7.93 16 11 C -0.25 -11.11 9.16 22.36 0.20 -10.91 16 12 C -0.04 -1.41 10.03 22.30 0.22 -1.19 16 13 C -0.19 -5.04 10.02 22.25 0.22 -4.82 16 14 C 0.00 0.00 8.70 22.52 0.20 0.20 16 15 C -0.22 -8.94 5.67 -19.98 -0.11 -9.05 16 16 C 0.59 24.31 7.33 86.70 0.64 24.94 16 17 O -0.57 -29.10 15.42 12.96 0.20 -28.90 16 18 N -0.47 -13.84 3.26 -464.25 -1.51 -15.35 16 19 C 0.05 1.26 6.76 86.41 0.58 1.84 16 20 C 0.05 1.06 7.11 72.12 0.51 1.57 16 21 O -0.41 -8.11 10.88 -148.98 -1.62 -9.73 16 22 C 0.20 3.60 7.73 127.58 0.99 4.59 16 23 N -0.45 -9.10 4.05 -298.54 -1.21 -10.31 16 24 H 0.29 16.11 8.31 -92.71 -0.77 15.34 16 25 H 0.11 5.37 5.64 -2.91 -0.02 5.35 16 26 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 27 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 28 H 0.17 3.48 6.02 -2.91 -0.02 3.46 16 29 H 0.08 2.56 7.10 -2.39 -0.02 2.54 16 30 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.37 5.12 8.80 -210.25 -1.85 3.27 16 Total: -1.00 -80.36 297.45 2.13 -78.23 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -0.71 Total: 10.20 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 4.75 Total: -6.99 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -2.42 Total: -81.44 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -1.44 Total: -51.95 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 1.96 Total: 51.94 kcal Total: -80.36 2.13 -78.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928954486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.332 kcal (2) G-P(sol) polarization free energy of solvation -80.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds