Wall clock time and date at job start Tue Mar 31 2020 00:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34637 * 116.99686 * 2 1 4 4 O 1.21507 * 120.00187 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99864 * 180.02562 * 3 2 1 6 6 C 1.39455 * 119.99779 * 174.87403 * 5 3 2 7 7 C 1.39167 * 119.91545 * 146.59744 * 6 5 3 8 8 C 1.37628 * 120.07847 * 179.97438 * 7 6 5 9 9 C 1.39837 * 119.92029 * 0.06236 * 8 7 6 10 10 C 1.47480 * 120.08154 * 180.23272 * 9 8 7 11 11 O 1.21625 * 119.99580 * 173.99405 * 10 9 8 12 12 N 1.34773 * 119.99635 * 353.99245 * 10 9 8 13 13 C 1.36901 * 119.99699 * 180.02562 * 12 10 9 14 14 H 1.08010 * 119.99790 * 359.97438 * 13 12 10 15 15 C 1.39023 * 120.00089 * 179.97438 * 13 12 10 16 16 N 1.31377 * 119.99975 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99916 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47016 * 60.00315 * 17 15 13 19 19 H 1.48504 * 109.46843 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47251 * 300.00333 * 17 15 13 21 21 C 1.39798 * 119.83967 * 359.95837 * 9 8 7 22 22 C 1.50702 * 120.04368 * 180.02562 * 21 9 8 23 23 C 1.37675 * 119.91796 * 359.97438 * 21 9 8 24 24 H 1.08997 * 109.47233 * 60.00587 * 1 2 3 25 25 H 1.09001 * 109.46626 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47233 * 299.99857 * 1 2 3 27 27 H 0.97001 * 119.99957 * 354.87049 * 5 3 2 28 28 H 1.07999 * 119.96447 * 0.02562 * 7 6 5 29 29 H 1.08003 * 120.04194 * 180.02562 * 8 7 6 30 30 H 0.96998 * 120.00469 * 359.97438 * 12 10 9 31 31 H 0.96996 * 119.99861 * 180.02562 * 16 15 13 32 32 H 1.09000 * 109.47215 * 83.26973 * 22 21 9 33 33 H 1.09002 * 109.47092 * 203.27370 * 22 21 9 34 34 H 1.09000 * 109.46783 * 323.26819 * 22 21 9 35 35 H 1.07997 * 119.95677 * 180.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0424 2.5080 -0.1084 7 6 5.2519 2.7281 0.5438 8 6 5.8800 3.9482 0.4392 9 6 5.3007 4.9678 -0.3226 10 6 5.9733 6.2750 -0.4413 11 8 5.5264 7.1229 -1.1900 12 7 7.0830 6.5298 0.2798 13 6 7.7070 7.7433 0.1700 14 1 7.3102 8.4964 -0.4949 15 6 8.8513 8.0064 0.9143 16 7 9.3343 7.0902 1.7226 17 14 9.7032 9.6621 0.7639 18 1 8.7622 10.7407 1.1595 19 1 10.8914 9.6901 1.6542 20 1 10.1334 9.8715 -0.6418 21 6 4.0855 4.7432 -0.9760 22 6 3.4574 5.8387 -1.7986 23 6 3.4636 3.5197 -0.8679 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.9373 0.4601 0.0742 28 1 5.6986 1.9402 1.1321 29 1 6.8188 4.1182 0.9453 30 1 7.4391 5.8536 0.8772 31 1 10.1325 7.2740 2.2422 32 1 3.9018 5.8460 -2.7939 33 1 2.3850 5.6619 -1.8809 34 1 3.6311 6.8004 -1.3160 35 1 2.5249 3.3454 -1.3728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931297977.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:25 Heat of formation + Delta-G solvation = -85.402142 kcal Electronic energy + Delta-G solvation = -20846.153904 eV Core-core repulsion = 17423.573242 eV Total energy + Delta-G solvation = -3422.580662 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.99360 -39.44494 -37.86284 -36.48500 -34.98867 -34.13309 -32.20839 -31.16980 -29.77799 -27.71677 -26.75556 -24.99506 -23.49312 -21.53415 -21.21096 -19.57816 -18.95040 -18.04092 -17.38484 -16.88601 -16.46625 -15.95861 -15.09475 -14.72113 -14.30076 -14.20015 -13.94017 -13.83125 -13.52152 -12.97530 -12.71486 -12.54393 -12.36078 -12.11206 -11.90361 -11.67064 -11.35399 -11.12317 -11.04220 -10.90313 -10.64125 -10.47236 -10.29050 -10.09458 -9.57142 -8.44551 -8.22401 -8.08053 -7.87099 -6.54571 -3.87333 1.22651 1.72713 1.93878 2.59930 3.17353 3.21515 3.25972 3.70364 3.99725 4.10143 4.47953 4.86097 4.93475 4.94705 5.09031 5.18806 5.21563 5.29909 5.54861 5.58498 5.69125 5.93908 6.01968 6.20614 6.29369 6.38606 6.42935 6.54325 6.69601 6.81551 7.13823 7.18965 7.30383 7.44618 7.98224 8.08485 8.52737 9.07707 9.44264 9.99892 10.62459 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040878 B = 0.003539 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.808595 B = 7909.142312 C = 8451.475386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.644 3.356 4 O -0.549 6.549 5 N -0.645 5.645 6 C 0.152 3.848 7 C -0.150 4.150 8 C -0.080 4.080 9 C -0.109 4.109 10 C 0.468 3.532 11 O -0.590 6.590 12 N -0.545 5.545 13 C -0.294 4.294 14 H 0.108 0.892 15 C 0.023 3.977 16 N -0.892 5.892 17 Si 0.935 3.065 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C -0.020 4.020 22 C -0.113 4.113 23 C -0.129 4.129 24 H 0.065 0.935 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.415 0.585 28 H 0.126 0.874 29 H 0.134 0.866 30 H 0.393 0.607 31 H 0.276 0.724 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.685 -15.175 -1.278 18.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.285 6.285 3 C 0.397 3.603 4 O -0.436 6.436 5 N -0.296 5.296 6 C 0.058 3.942 7 C -0.170 4.170 8 C -0.100 4.100 9 C -0.113 4.113 10 C 0.257 3.743 11 O -0.477 6.477 12 N -0.179 5.179 13 C -0.424 4.424 14 H 0.125 0.875 15 C -0.180 4.180 16 N -0.532 5.532 17 Si 0.761 3.239 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.023 4.023 22 C -0.169 4.169 23 C -0.149 4.149 24 H 0.084 0.916 25 H 0.122 0.878 26 H 0.084 0.916 27 H 0.252 0.748 28 H 0.144 0.856 29 H 0.151 0.849 30 H 0.228 0.772 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.218 -14.161 -1.639 18.140 hybrid contribution 0.846 -0.218 0.528 1.021 sum -10.372 -14.378 -1.111 17.764 Atomic orbital electron populations 1.23236 0.73999 1.03570 1.03025 1.86230 1.24507 1.30806 1.87006 1.18118 0.83253 0.82393 0.76500 1.91054 1.64302 1.34519 1.53746 1.41809 1.03299 1.09404 1.75100 1.17458 0.93706 0.84588 0.98412 1.20620 0.96056 0.98442 1.01929 1.21183 0.99565 0.91883 0.97350 1.20244 0.95995 0.95450 0.99654 1.17634 0.83637 0.87213 0.85814 1.90546 1.66279 1.48363 1.42519 1.41902 1.22675 1.15729 1.37582 1.19784 1.06744 0.92233 1.23590 0.87470 1.25366 0.97086 0.99728 0.95835 1.69583 1.23319 1.34300 1.25961 0.85847 0.78410 0.81191 0.78431 1.19683 1.20838 1.19692 1.19855 0.92781 0.94322 0.95301 1.21014 0.97514 0.98828 0.99562 1.20896 1.01312 0.92650 1.00062 0.91633 0.87840 0.91639 0.74822 0.85559 0.84864 0.77206 0.91445 0.91175 0.93504 0.87931 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.56 101.05 1.07 1.48 16 2 O -0.37 -3.87 10.62 -40.32 -0.43 -4.30 16 3 C 0.64 8.47 8.48 54.05 0.46 8.93 16 4 O -0.55 -9.00 13.79 -19.28 -0.27 -9.26 16 5 N -0.65 -7.68 5.33 -14.26 -0.08 -7.76 16 6 C 0.15 2.25 6.28 -83.72 -0.53 1.73 16 7 C -0.15 -2.16 9.94 -39.46 -0.39 -2.55 16 8 C -0.08 -1.38 9.52 -39.21 -0.37 -1.75 16 9 C -0.11 -2.23 5.88 -104.95 -0.62 -2.85 16 10 C 0.47 11.51 7.64 -12.50 -0.10 11.41 16 11 O -0.59 -15.87 12.90 5.26 0.07 -15.80 16 12 N -0.54 -13.91 5.23 -11.94 -0.06 -13.97 16 13 C -0.29 -8.07 9.68 -15.00 -0.15 -8.21 16 14 H 0.11 3.05 7.15 -52.48 -0.38 2.68 16 15 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 16 N -0.89 -23.60 13.05 55.50 0.72 -22.88 16 17 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 C -0.02 -0.39 5.91 -104.24 -0.62 -1.00 16 22 C -0.11 -2.10 8.71 36.01 0.31 -1.78 16 23 C -0.13 -2.19 8.25 -39.46 -0.33 -2.51 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.42 3.49 8.92 -40.82 -0.36 3.12 16 28 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.13 2.23 6.44 -52.48 -0.34 1.89 16 30 H 0.39 9.50 5.95 -40.82 -0.24 9.26 16 31 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.05 0.75 8.04 -51.93 -0.42 0.33 16 34 H 0.10 2.17 5.86 -51.93 -0.30 1.87 16 35 H 0.13 2.23 6.39 -52.49 -0.34 1.90 16 LS Contribution 305.80 15.07 4.61 4.61 Total: -1.00 -32.20 305.80 -5.43 -37.63 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -3.62 Total: 12.83 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -1.35 Total: 3.39 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.59 Total: -44.60 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.63 Total: -29.36 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.20 -5.43 -37.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931297977.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.772 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds