Wall clock time and date at job start Tue Mar 31 2020 00:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34637 * 116.99686 * 2 1 4 4 O 1.21507 * 120.00187 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99864 * 180.02562 * 3 2 1 6 6 C 1.39455 * 119.99779 * 174.87403 * 5 3 2 7 7 C 1.39167 * 119.91545 * 146.59744 * 6 5 3 8 8 C 1.37628 * 120.07847 * 179.97438 * 7 6 5 9 9 C 1.39837 * 119.92029 * 0.06236 * 8 7 6 10 10 C 1.47480 * 120.08154 * 180.23272 * 9 8 7 11 11 O 1.21625 * 119.99580 * 173.99405 * 10 9 8 12 12 N 1.34773 * 119.99635 * 353.99245 * 10 9 8 13 13 C 1.36901 * 119.99699 * 180.02562 * 12 10 9 14 14 H 1.08010 * 119.99790 * 359.97438 * 13 12 10 15 15 C 1.39023 * 120.00089 * 179.97438 * 13 12 10 16 16 N 1.31377 * 119.99975 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99916 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47016 * 60.00315 * 17 15 13 19 19 H 1.48504 * 109.46843 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47251 * 300.00333 * 17 15 13 21 21 C 1.39798 * 119.83967 * 359.95837 * 9 8 7 22 22 C 1.50702 * 120.04368 * 180.02562 * 21 9 8 23 23 C 1.37675 * 119.91796 * 359.97438 * 21 9 8 24 24 H 1.08997 * 109.47233 * 60.00587 * 1 2 3 25 25 H 1.09001 * 109.46626 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47233 * 299.99857 * 1 2 3 27 27 H 0.97001 * 119.99957 * 354.87049 * 5 3 2 28 28 H 1.07999 * 119.96447 * 0.02562 * 7 6 5 29 29 H 1.08003 * 120.04194 * 180.02562 * 8 7 6 30 30 H 0.96998 * 120.00469 * 359.97438 * 12 10 9 31 31 H 0.96996 * 119.99861 * 180.02562 * 16 15 13 32 32 H 1.09000 * 109.47215 * 83.26973 * 22 21 9 33 33 H 1.09002 * 109.47092 * 203.27370 * 22 21 9 34 34 H 1.09000 * 109.46783 * 323.26819 * 22 21 9 35 35 H 1.07997 * 119.95677 * 180.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0424 2.5080 -0.1084 7 6 5.2519 2.7281 0.5438 8 6 5.8800 3.9482 0.4392 9 6 5.3007 4.9678 -0.3226 10 6 5.9733 6.2750 -0.4413 11 8 5.5264 7.1229 -1.1900 12 7 7.0830 6.5298 0.2798 13 6 7.7070 7.7433 0.1700 14 1 7.3102 8.4964 -0.4949 15 6 8.8513 8.0064 0.9143 16 7 9.3343 7.0902 1.7226 17 14 9.7032 9.6621 0.7639 18 1 8.7622 10.7407 1.1595 19 1 10.8914 9.6901 1.6542 20 1 10.1334 9.8715 -0.6418 21 6 4.0855 4.7432 -0.9760 22 6 3.4574 5.8387 -1.7986 23 6 3.4636 3.5197 -0.8679 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.9373 0.4601 0.0742 28 1 5.6986 1.9402 1.1321 29 1 6.8188 4.1182 0.9453 30 1 7.4391 5.8536 0.8772 31 1 10.1325 7.2740 2.2422 32 1 3.9018 5.8460 -2.7939 33 1 2.3850 5.6619 -1.8809 34 1 3.6311 6.8004 -1.3160 35 1 2.5249 3.3454 -1.3728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931297977.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:24 Heat of formation + Delta-G solvation = -108.501396 kcal Electronic energy + Delta-G solvation = -20847.155562 eV Core-core repulsion = 17423.573242 eV Total energy + Delta-G solvation = -3423.582321 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.07325 -40.91619 -39.38193 -37.61766 -36.34955 -35.94378 -33.83736 -32.91017 -31.14062 -28.49551 -28.23915 -26.81402 -24.84182 -22.83416 -22.47953 -21.24072 -20.15898 -19.80215 -18.49038 -18.30068 -17.64179 -17.06440 -16.85270 -16.29933 -15.77139 -15.63562 -15.54357 -15.07709 -14.69091 -14.41636 -14.19520 -14.02977 -13.65488 -13.48824 -13.23794 -13.02315 -12.96471 -12.86953 -12.48851 -12.18340 -12.10416 -11.87718 -11.77179 -11.55230 -11.34531 -10.18442 -10.05879 -9.76241 -9.22742 -8.52019 -5.95744 -0.16737 0.38540 0.99102 1.40359 1.42450 1.53555 1.54074 2.12939 2.28595 2.81746 3.10143 3.16773 3.32118 3.80893 3.91052 4.20666 4.24183 4.31454 4.35716 4.37296 4.50774 4.68743 4.79221 4.86791 4.91479 5.06101 5.11798 5.22666 5.32920 5.37860 5.39222 5.66353 5.89582 6.01895 6.19527 6.55578 7.07030 7.11042 7.48968 8.06005 8.65236 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040878 B = 0.003539 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.808595 B = 7909.142312 C = 8451.475386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.363 6.363 3 C 0.645 3.355 4 O -0.584 6.584 5 N -0.631 5.631 6 C 0.172 3.828 7 C -0.133 4.133 8 C -0.075 4.075 9 C -0.144 4.144 10 C 0.467 3.533 11 O -0.621 6.621 12 N -0.555 5.555 13 C -0.334 4.334 14 H 0.084 0.916 15 C -0.010 4.010 16 N -0.912 5.912 17 Si 0.997 3.003 18 H -0.271 1.271 19 H -0.268 1.268 20 H -0.270 1.270 21 C -0.030 4.030 22 C -0.107 4.107 23 C -0.134 4.134 24 H 0.063 0.937 25 H 0.141 0.859 26 H 0.062 0.938 27 H 0.436 0.564 28 H 0.173 0.827 29 H 0.137 0.863 30 H 0.397 0.603 31 H 0.282 0.718 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.006 -17.871 -0.568 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.277 6.277 3 C 0.399 3.601 4 O -0.474 6.474 5 N -0.284 5.284 6 C 0.078 3.922 7 C -0.153 4.153 8 C -0.095 4.095 9 C -0.148 4.148 10 C 0.257 3.743 11 O -0.511 6.511 12 N -0.191 5.191 13 C -0.464 4.464 14 H 0.102 0.898 15 C -0.211 4.211 16 N -0.552 5.552 17 Si 0.820 3.180 18 H -0.197 1.197 19 H -0.192 1.192 20 H -0.195 1.195 21 C -0.032 4.032 22 C -0.164 4.164 23 C -0.155 4.155 24 H 0.081 0.919 25 H 0.159 0.841 26 H 0.081 0.919 27 H 0.276 0.724 28 H 0.190 0.810 29 H 0.155 0.845 30 H 0.233 0.767 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.543 -16.936 -0.918 20.516 hybrid contribution 0.730 0.387 0.284 0.874 sum -10.813 -16.549 -0.634 19.779 Atomic orbital electron populations 1.23599 0.72195 1.06017 1.02818 1.86263 1.26139 1.28902 1.86349 1.18265 0.83357 0.82704 0.75757 1.91046 1.65139 1.35969 1.55199 1.41655 1.03295 1.09136 1.74346 1.17518 0.93367 0.85043 0.96303 1.20950 0.95232 0.98140 1.00994 1.21276 0.99637 0.92220 0.96325 1.20005 0.97223 0.94449 1.03096 1.18383 0.83005 0.88448 0.84421 1.90516 1.66987 1.50040 1.43533 1.41877 1.23282 1.15486 1.38414 1.19741 1.08461 0.93044 1.25137 0.89803 1.26128 0.96929 1.03061 0.94978 1.69636 1.23717 1.35637 1.26214 0.84933 0.77586 0.76936 0.78567 1.19654 1.19215 1.19528 1.19912 0.92608 0.95271 0.95458 1.20884 0.99043 0.97401 0.99031 1.20913 1.01411 0.92423 1.00706 0.91853 0.84069 0.91934 0.72359 0.80982 0.84516 0.76727 0.90883 0.91525 0.91132 0.91120 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.56 10.56 113.37 1.20 1.76 16 2 O -0.36 -6.37 10.62 -55.46 -0.59 -6.96 16 3 C 0.64 15.07 8.48 129.79 1.10 16.17 16 4 O -0.58 -17.98 13.79 19.82 0.27 -17.70 16 5 N -0.63 -12.63 5.33 -429.44 -2.29 -14.92 16 6 C 0.17 4.59 6.28 38.36 0.24 4.84 16 7 C -0.13 -3.37 9.94 22.35 0.22 -3.14 16 8 C -0.07 -2.49 9.52 22.51 0.21 -2.28 16 9 C -0.14 -5.96 5.88 -20.08 -0.12 -6.08 16 10 C 0.47 24.03 7.64 86.68 0.66 24.70 16 11 O -0.62 -35.43 12.90 -4.11 -0.05 -35.48 16 12 N -0.56 -29.53 5.23 -309.93 -1.62 -31.15 16 13 C -0.33 -19.15 9.68 84.09 0.81 -18.34 16 14 H 0.08 5.07 7.15 -2.91 -0.02 5.05 16 15 C -0.01 -0.53 5.50 84.95 0.47 -0.06 16 16 N -0.91 -48.57 13.05 21.68 0.28 -48.29 16 17 Si 1.00 42.49 29.55 68.60 2.03 44.52 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 21 C -0.03 -1.16 5.91 -19.62 -0.12 -1.28 16 22 C -0.11 -4.11 8.71 71.24 0.62 -3.49 16 23 C -0.13 -4.35 8.25 22.35 0.18 -4.17 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.44 5.26 8.92 -92.71 -0.83 4.44 16 28 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 29 H 0.14 4.45 6.44 -2.91 -0.02 4.43 16 30 H 0.40 19.81 5.95 -92.71 -0.55 19.26 16 31 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 34 H 0.07 3.17 5.86 -2.39 -0.01 3.16 16 35 H 0.14 4.36 6.39 -2.91 -0.02 4.34 16 Total: -1.00 -72.50 305.80 3.30 -69.20 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: -0.22 Total: 32.17 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 5.49 Total: 8.62 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -3.62 Total: -94.36 kcal Atomic # 8 Polarization: -59.78 SS G_CDS: -0.37 Total: -60.14 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -72.50 3.30 -69.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931297977.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.306 kcal (2) G-P(sol) polarization free energy of solvation -72.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds