Wall clock time and date at job start Tue Mar 31 2020 00:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00250 * 2 1 4 4 H 1.48502 * 109.46607 * 275.01723 * 3 2 1 5 5 H 1.48501 * 109.46928 * 35.01263 * 3 2 1 6 6 H 1.48498 * 109.47413 * 155.01629 * 3 2 1 7 7 C 1.38813 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99892 * 37.52280 * 7 2 1 9 9 N 1.36941 * 120.00166 * 217.51379 * 7 2 1 10 10 C 1.46968 * 120.59355 * 204.37780 * 9 7 2 11 11 C 1.53367 * 108.63154 * 235.24896 * 10 9 7 12 12 N 1.46969 * 108.63612 * 310.57291 * 11 10 9 13 13 C 1.34769 * 120.59664 * 235.20941 * 12 11 10 14 14 O 1.21596 * 120.00181 * 5.99119 * 13 12 11 15 15 C 1.47517 * 120.00218 * 185.72045 * 13 12 11 16 16 C 1.37976 * 126.75081 * 209.25570 * 15 13 12 17 17 O 1.33448 * 108.41775 * 179.82372 * 16 15 13 18 18 C 1.34963 * 109.87332 * 0.44917 * 17 16 15 19 19 C 1.41478 * 125.69687 * 179.74534 * 18 17 16 20 20 O 1.21420 * 120.00151 * 359.97197 * 19 18 17 21 21 C 1.36563 * 108.60871 * 359.71621 * 18 17 16 22 22 C 1.46961 * 118.80892 * 55.48011 * 12 11 10 23 23 C 1.46964 * 120.59044 * 24.39743 * 9 7 2 24 24 H 0.97001 * 119.99673 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.60997 * 115.50213 * 10 9 7 26 26 H 1.09004 * 109.75010 * 355.07908 * 10 9 7 27 27 H 1.08998 * 109.60594 * 190.83254 * 11 10 9 28 28 H 1.08994 * 109.75355 * 70.40844 * 11 10 9 29 29 H 1.08004 * 125.78836 * 359.97438 * 16 15 13 30 30 H 1.08003 * 120.00173 * 179.97438 * 19 18 17 31 31 H 1.07998 * 126.70145 * 180.02562 * 21 18 17 32 32 H 1.09002 * 109.61237 * 64.26765 * 22 12 11 33 33 H 1.09001 * 109.61488 * 184.77565 * 22 12 11 34 34 H 1.09003 * 109.60686 * 244.49354 * 23 9 7 35 35 H 1.08998 * 109.61282 * 5.01075 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3917 2.1075 -1.3948 5 1 1.5047 2.6197 0.8033 6 1 3.5968 1.4118 0.5913 7 6 2.0102 -1.2022 0.0005 8 1 1.6377 -2.0410 -0.5688 9 7 3.1672 -1.3246 0.7228 10 6 4.1777 -2.3255 0.3526 11 6 4.4615 -3.2099 1.5731 12 7 4.7148 -2.3429 2.7325 13 6 5.8531 -2.4639 3.4438 14 8 6.7287 -3.2183 3.0661 15 6 6.0392 -1.6767 4.6774 16 6 7.2364 -1.2342 5.2016 17 8 6.9810 -0.5556 6.3219 18 6 5.6524 -0.5448 6.5589 19 6 5.0152 0.0754 7.6593 20 8 5.6761 0.6620 8.4920 21 6 5.0257 -1.2319 5.5589 22 6 3.7019 -1.3458 3.1060 23 6 3.4205 -0.4576 1.8821 24 1 -0.4850 0.8401 0.0004 25 1 5.0943 -1.8231 0.0438 26 1 3.8042 -2.9407 -0.4661 27 1 5.3379 -3.8286 1.3806 28 1 3.6006 -3.8474 1.7741 29 1 8.2141 -1.4057 4.7759 30 1 3.9408 0.0272 7.7587 31 1 3.9638 -1.4023 5.4600 32 1 2.7862 -1.8515 3.4125 33 1 4.0764 -0.7332 3.9261 34 1 4.2833 0.1778 1.6822 35 1 2.5440 0.1612 2.0746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933237264.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:31 Heat of formation + Delta-G solvation = 2.417085 kcal Electronic energy + Delta-G solvation = -21652.421074 eV Core-core repulsion = 18233.648539 eV Total energy + Delta-G solvation = -3418.772534 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.12918 -39.73741 -38.99394 -37.10024 -34.38814 -33.54829 -31.63222 -30.96648 -30.59297 -27.41177 -25.01504 -24.44084 -23.45081 -22.76371 -21.64729 -20.28327 -18.91780 -17.88575 -17.08971 -16.70354 -16.36458 -16.23860 -15.84263 -15.15775 -15.11447 -14.70480 -14.36602 -14.15449 -13.90655 -13.47693 -13.42300 -13.06324 -12.77854 -12.58301 -12.22998 -11.89751 -11.19501 -10.91539 -10.53643 -10.50242 -10.46275 -10.29117 -10.21743 -9.72830 -9.53386 -9.07791 -8.83208 -8.32336 -7.14290 -6.17262 -3.35098 0.37088 1.36574 2.39916 2.54732 3.01264 3.25470 3.30287 3.42061 3.48016 4.05710 4.38764 4.44427 4.49860 4.71486 4.76139 4.92915 5.15970 5.24523 5.44098 5.49269 5.51082 5.67864 5.75175 5.78845 5.95712 6.00183 6.13043 6.36292 6.40630 6.49166 6.65837 6.79293 7.07792 7.58761 7.77643 8.15413 8.24354 8.79220 9.58551 9.97140 10.96683 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018574 B = 0.005535 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.150402 B = 5057.047910 C = 6051.972411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.040 3.960 3 Si 0.831 3.169 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.257 1.257 7 C -0.277 4.277 8 H 0.085 0.915 9 N -0.599 5.599 10 C 0.133 3.867 11 C 0.097 3.903 12 N -0.588 5.588 13 C 0.582 3.418 14 O -0.552 6.552 15 C -0.239 4.239 16 C 0.077 3.923 17 O -0.139 6.139 18 C -0.133 4.133 19 C 0.410 3.590 20 O -0.455 6.455 21 C -0.092 4.092 22 C 0.071 3.929 23 C 0.132 3.868 24 H 0.264 0.736 25 H 0.027 0.973 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.224 0.776 30 H 0.139 0.861 31 H 0.177 0.823 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.033 0.967 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.817 -2.506 11.453 14.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.161 4.161 3 Si 0.658 3.342 4 H -0.220 1.220 5 H -0.220 1.220 6 H -0.182 1.182 7 C -0.404 4.404 8 H 0.102 0.898 9 N -0.323 5.323 10 C 0.006 3.994 11 C -0.027 4.027 12 N -0.320 5.320 13 C 0.370 3.630 14 O -0.432 6.432 15 C -0.244 4.244 16 C 0.003 3.997 17 O -0.032 6.032 18 C -0.182 4.182 19 C 0.269 3.731 20 O -0.329 6.329 21 C -0.112 4.112 22 C -0.053 4.053 23 C 0.005 3.995 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.241 0.759 30 H 0.155 0.845 31 H 0.194 0.806 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.596 -2.356 11.868 15.443 hybrid contribution 0.159 0.963 -0.525 1.109 sum 9.755 -1.393 11.343 15.026 Atomic orbital electron populations 1.70123 1.06181 1.26989 1.48342 1.25148 0.94761 0.97371 0.98869 0.87705 0.82135 0.86175 0.78226 1.21954 1.21964 1.18212 1.18789 0.96549 0.97142 1.27893 0.89785 1.44310 1.19175 1.39662 1.29121 1.21329 0.92212 0.91530 0.94312 1.22269 1.01402 0.93002 0.86012 1.47843 1.18273 1.36414 1.29427 1.17243 0.82117 0.81532 0.82078 1.90761 1.41820 1.40031 1.70590 1.20740 0.93794 1.09314 1.00522 1.25195 1.00095 0.90654 0.83793 1.84098 1.25219 1.56964 1.36904 1.22140 0.81370 1.11349 1.03329 1.22185 0.95119 0.75385 0.80381 1.90634 1.69278 1.33219 1.39779 1.22609 1.01167 0.95369 0.92015 1.23086 0.91113 0.91288 0.99821 1.21796 0.99593 0.92099 0.85977 0.92658 0.95502 0.90549 0.89496 0.91153 0.75939 0.84463 0.80569 0.90578 0.89678 0.94884 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.01 13.97 55.49 0.78 -24.23 16 2 C 0.04 1.08 4.82 -17.43 -0.08 0.99 16 3 Si 0.83 19.95 26.38 -169.99 -4.48 15.47 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -5.87 4.90 56.52 0.28 -5.59 16 7 C -0.28 -7.17 9.87 -15.06 -0.15 -7.32 16 8 H 0.08 2.32 8.04 -52.48 -0.42 1.90 16 9 N -0.60 -13.16 2.74 -171.76 -0.47 -13.63 16 10 C 0.13 2.47 6.67 -3.60 -0.02 2.44 16 11 C 0.10 1.58 6.60 -3.60 -0.02 1.55 16 12 N -0.59 -9.39 2.94 -173.45 -0.51 -9.90 16 13 C 0.58 9.10 7.64 -12.48 -0.10 9.00 16 14 O -0.55 -10.01 16.44 5.28 0.09 -9.92 16 15 C -0.24 -3.00 5.58 -104.97 -0.59 -3.59 16 16 C 0.08 0.83 12.05 30.64 0.37 1.20 16 17 O -0.14 -1.62 10.57 -4.76 -0.05 -1.67 16 18 C -0.13 -1.37 6.89 -38.95 -0.27 -1.64 16 19 C 0.41 3.63 11.38 31.97 0.36 3.99 16 20 O -0.46 -5.95 17.88 -5.41 -0.10 -6.05 16 21 C -0.09 -0.93 8.36 -38.95 -0.33 -1.25 16 22 C 0.07 1.08 5.53 -3.37 -0.02 1.06 16 23 C 0.13 2.59 4.54 -3.37 -0.02 2.57 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.37 7.93 -51.93 -0.41 0.96 16 27 H 0.09 1.37 6.99 -51.93 -0.36 1.01 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.22 1.76 8.06 -52.48 -0.42 1.34 16 30 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 31 H 0.18 1.39 6.50 -52.49 -0.34 1.04 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.06 4.00 -51.93 -0.21 0.85 16 34 H 0.03 0.67 6.78 -51.93 -0.35 0.32 16 35 H 0.08 1.63 5.40 -51.93 -0.28 1.35 16 LS Contribution 294.46 15.07 4.44 4.44 Total: -1.00 -33.51 294.46 -4.92 -38.43 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -3.75 Total: -1.95 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -0.86 Total: 9.01 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.21 Total: -47.76 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.06 Total: -17.64 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.48 Total: 15.47 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.51 -4.92 -38.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933237264.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.849 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds