Wall clock time and date at job start Tue Mar 31 2020 00:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00250 * 2 1 4 4 H 1.48502 * 109.46607 * 275.01723 * 3 2 1 5 5 H 1.48501 * 109.46928 * 35.01263 * 3 2 1 6 6 H 1.48498 * 109.47413 * 155.01629 * 3 2 1 7 7 C 1.38813 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99892 * 37.52280 * 7 2 1 9 9 N 1.36941 * 120.00166 * 217.51379 * 7 2 1 10 10 C 1.46968 * 120.59355 * 204.37780 * 9 7 2 11 11 C 1.53367 * 108.63154 * 235.24896 * 10 9 7 12 12 N 1.46969 * 108.63612 * 310.57291 * 11 10 9 13 13 C 1.34769 * 120.59664 * 235.20941 * 12 11 10 14 14 O 1.21596 * 120.00181 * 5.99119 * 13 12 11 15 15 C 1.47517 * 120.00218 * 185.72045 * 13 12 11 16 16 C 1.37976 * 126.75081 * 209.25570 * 15 13 12 17 17 O 1.33448 * 108.41775 * 179.82372 * 16 15 13 18 18 C 1.34963 * 109.87332 * 0.44917 * 17 16 15 19 19 C 1.41478 * 125.69687 * 179.74534 * 18 17 16 20 20 O 1.21420 * 120.00151 * 359.97197 * 19 18 17 21 21 C 1.36563 * 108.60871 * 359.71621 * 18 17 16 22 22 C 1.46961 * 118.80892 * 55.48011 * 12 11 10 23 23 C 1.46964 * 120.59044 * 24.39743 * 9 7 2 24 24 H 0.97001 * 119.99673 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.60997 * 115.50213 * 10 9 7 26 26 H 1.09004 * 109.75010 * 355.07908 * 10 9 7 27 27 H 1.08998 * 109.60594 * 190.83254 * 11 10 9 28 28 H 1.08994 * 109.75355 * 70.40844 * 11 10 9 29 29 H 1.08004 * 125.78836 * 359.97438 * 16 15 13 30 30 H 1.08003 * 120.00173 * 179.97438 * 19 18 17 31 31 H 1.07998 * 126.70145 * 180.02562 * 21 18 17 32 32 H 1.09002 * 109.61237 * 64.26765 * 22 12 11 33 33 H 1.09001 * 109.61488 * 184.77565 * 22 12 11 34 34 H 1.09003 * 109.60686 * 244.49354 * 23 9 7 35 35 H 1.08998 * 109.61282 * 5.01075 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3917 2.1075 -1.3948 5 1 1.5047 2.6197 0.8033 6 1 3.5968 1.4118 0.5913 7 6 2.0102 -1.2022 0.0005 8 1 1.6377 -2.0410 -0.5688 9 7 3.1672 -1.3246 0.7228 10 6 4.1777 -2.3255 0.3526 11 6 4.4615 -3.2099 1.5731 12 7 4.7148 -2.3429 2.7325 13 6 5.8531 -2.4639 3.4438 14 8 6.7287 -3.2183 3.0661 15 6 6.0392 -1.6767 4.6774 16 6 7.2364 -1.2342 5.2016 17 8 6.9810 -0.5556 6.3219 18 6 5.6524 -0.5448 6.5589 19 6 5.0152 0.0754 7.6593 20 8 5.6761 0.6620 8.4920 21 6 5.0257 -1.2319 5.5589 22 6 3.7019 -1.3458 3.1060 23 6 3.4205 -0.4576 1.8821 24 1 -0.4850 0.8401 0.0004 25 1 5.0943 -1.8231 0.0438 26 1 3.8042 -2.9407 -0.4661 27 1 5.3379 -3.8286 1.3806 28 1 3.6006 -3.8474 1.7741 29 1 8.2141 -1.4057 4.7759 30 1 3.9408 0.0272 7.7587 31 1 3.9638 -1.4023 5.4600 32 1 2.7862 -1.8515 3.4125 33 1 4.0764 -0.7332 3.9261 34 1 4.2833 0.1778 1.6822 35 1 2.5440 0.1612 2.0746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933237264.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:30 Heat of formation + Delta-G solvation = -20.823958 kcal Electronic energy + Delta-G solvation = -21653.428881 eV Core-core repulsion = 18233.648539 eV Total energy + Delta-G solvation = -3419.780342 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.97006 -40.98737 -39.80352 -38.56889 -35.79804 -34.71065 -33.40725 -32.18030 -31.64969 -28.97368 -25.95859 -25.77480 -24.79838 -24.11864 -22.62920 -21.61978 -20.01676 -19.13363 -18.24766 -17.85532 -17.53610 -17.14573 -16.99701 -16.65071 -16.17854 -16.07231 -15.98178 -15.34089 -14.99026 -14.80285 -14.68705 -14.31789 -14.15056 -14.06581 -13.66742 -13.29840 -12.77683 -12.54490 -12.24146 -12.09930 -11.90358 -11.42532 -11.32973 -11.16103 -10.87294 -10.67086 -9.98320 -9.80264 -8.91335 -8.21886 -5.36111 -0.37386 0.43382 1.35523 1.49296 1.53886 1.63636 1.78344 1.89885 2.15812 2.45045 2.93891 3.24637 3.38109 3.52447 3.70072 3.96408 4.09492 4.14413 4.21037 4.35529 4.41669 4.55919 4.58139 4.66572 4.71688 4.76030 4.86878 4.97199 5.00275 5.17988 5.44418 5.59288 5.85052 6.10890 6.37449 6.41859 6.89795 7.03144 7.63262 8.04744 8.95502 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018574 B = 0.005535 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.150402 B = 5057.047910 C = 6051.972411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.006 4.006 3 Si 0.890 3.110 4 H -0.308 1.308 5 H -0.292 1.292 6 H -0.238 1.238 7 C -0.265 4.265 8 H 0.055 0.945 9 N -0.612 5.612 10 C 0.132 3.868 11 C 0.106 3.894 12 N -0.594 5.594 13 C 0.586 3.414 14 O -0.581 6.581 15 C -0.268 4.268 16 C 0.092 3.908 17 O -0.154 6.154 18 C -0.142 4.142 19 C 0.419 3.581 20 O -0.503 6.503 21 C -0.079 4.079 22 C 0.084 3.916 23 C 0.125 3.875 24 H 0.263 0.737 25 H 0.027 0.973 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.246 0.754 30 H 0.196 0.804 31 H 0.203 0.797 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.031 0.969 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.719 -2.194 13.125 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.718 3.282 4 H -0.237 1.237 5 H -0.218 1.218 6 H -0.161 1.161 7 C -0.393 4.393 8 H 0.073 0.927 9 N -0.336 5.336 10 C 0.006 3.994 11 C -0.018 4.018 12 N -0.325 5.325 13 C 0.376 3.624 14 O -0.463 6.463 15 C -0.273 4.273 16 C 0.018 3.982 17 O -0.046 6.046 18 C -0.190 4.190 19 C 0.282 3.718 20 O -0.380 6.380 21 C -0.099 4.099 22 C -0.039 4.039 23 C -0.001 4.001 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.262 0.738 30 H 0.211 0.789 31 H 0.219 0.781 32 H 0.102 0.898 33 H 0.137 0.863 34 H 0.049 0.951 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.531 -2.047 13.565 17.294 hybrid contribution -0.067 0.764 -1.076 1.322 sum 10.464 -1.283 12.488 16.343 Atomic orbital electron populations 1.70193 1.07589 1.27502 1.51325 1.25574 0.95130 0.99917 0.99839 0.86767 0.81855 0.82452 0.77168 1.23701 1.21847 1.16119 1.18732 0.97414 0.96116 1.27076 0.92727 1.44428 1.18859 1.40553 1.29790 1.21418 0.91209 0.91127 0.95658 1.22070 1.01794 0.92591 0.85336 1.47889 1.18711 1.36475 1.29409 1.17552 0.81189 0.81091 0.82534 1.90745 1.42629 1.41348 1.71600 1.20607 0.95456 1.10917 1.00283 1.25639 1.00657 0.88977 0.82954 1.84135 1.26336 1.57095 1.37081 1.22638 0.80847 1.11550 1.03990 1.23139 0.96944 0.73148 0.78568 1.90635 1.70561 1.35435 1.41319 1.22796 1.01924 0.94203 0.90941 1.22976 0.91625 0.90883 0.98455 1.21855 0.98813 0.92585 0.86857 0.92777 0.95494 0.90571 0.88897 0.90784 0.73827 0.78856 0.78060 0.89792 0.86308 0.95118 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.48 13.97 21.65 0.30 -53.18 16 2 C -0.01 -0.34 4.82 84.86 0.41 0.07 16 3 Si 0.89 41.31 26.38 68.60 1.81 43.12 16 4 H -0.31 -15.04 7.11 99.48 0.71 -14.33 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.24 -10.12 4.90 99.48 0.49 -9.63 16 7 C -0.26 -13.79 9.87 84.03 0.83 -12.96 16 8 H 0.05 3.11 8.04 -2.91 -0.02 3.09 16 9 N -0.61 -26.26 2.74 -697.33 -1.91 -28.17 16 10 C 0.13 4.76 6.67 86.41 0.58 5.34 16 11 C 0.11 3.27 6.60 86.41 0.57 3.84 16 12 N -0.59 -17.44 2.94 -820.94 -2.41 -19.85 16 13 C 0.59 16.86 7.64 86.69 0.66 17.52 16 14 O -0.58 -20.02 16.44 -4.02 -0.07 -20.09 16 15 C -0.27 -5.92 5.58 -20.09 -0.11 -6.03 16 16 C 0.09 1.74 12.05 67.76 0.82 2.55 16 17 O -0.15 -3.19 10.57 9.23 0.10 -3.09 16 18 C -0.14 -2.45 6.89 22.68 0.16 -2.30 16 19 C 0.42 5.99 11.38 68.62 0.78 6.77 16 20 O -0.50 -12.18 17.88 6.90 0.12 -12.06 16 21 C -0.08 -1.29 8.36 22.68 0.19 -1.10 16 22 C 0.08 2.29 5.53 86.57 0.48 2.77 16 23 C 0.12 4.61 4.54 86.57 0.39 5.01 16 24 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 25 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 2.71 7.93 -2.38 -0.02 2.69 16 27 H 0.09 2.79 6.99 -2.39 -0.02 2.78 16 28 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.25 3.22 8.06 -2.91 -0.02 3.19 16 30 H 0.20 0.53 8.06 -2.91 -0.02 0.51 16 31 H 0.20 2.14 6.50 -2.91 -0.02 2.12 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 33 H 0.12 2.45 4.00 -2.39 -0.01 2.44 16 34 H 0.03 1.16 6.78 -2.39 -0.02 1.14 16 35 H 0.07 2.60 5.40 -2.39 -0.01 2.59 16 Total: -1.00 -73.43 294.46 4.60 -68.83 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: 0.91 Total: 3.01 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 5.75 Total: 21.48 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -4.02 Total: -101.20 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: 0.15 Total: -35.24 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.81 Total: 43.12 kcal Total: -73.43 4.60 -68.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933237264.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.008 kcal (2) G-P(sol) polarization free energy of solvation -73.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds