Wall clock time and date at job start Mon Mar 30 2020 23:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86793 * 120.00029 * 2 1 4 4 H 1.48504 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47524 * 300.00039 * 3 2 1 6 6 H 1.48506 * 109.47106 * 59.99996 * 3 2 1 7 7 C 1.40135 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99828 * 179.97438 * 7 2 1 9 9 C 1.41812 * 120.00024 * 0.02562 * 7 2 1 10 10 O 1.21772 * 120.00427 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00079 * 179.97438 * 9 7 2 12 12 C 1.39568 * 120.00175 * 185.52119 * 11 9 7 13 13 C 1.38936 * 120.11121 * 24.84325 * 12 11 9 14 14 C 1.38087 * 119.96901 * 180.02562 * 13 12 11 15 15 C 1.38394 * 120.19706 * 359.97438 * 14 13 12 16 16 C 1.38242 * 120.22348 * 0.02562 * 15 14 13 17 17 C 1.38544 * 120.02513 * 0.02562 * 16 15 14 18 18 O 1.35931 * 120.09533 * 180.02562 * 17 16 15 19 19 C 1.42904 * 117.00081 * 359.95057 * 18 17 16 20 20 C 1.52998 * 109.47142 * 179.97438 * 19 18 17 21 21 C 1.50695 * 109.47139 * 179.97438 * 20 19 18 22 22 N 1.34780 * 120.00201 * 179.97438 * 21 20 19 23 23 O 1.21285 * 119.99868 * 0.02562 * 21 20 19 24 24 H 0.97004 * 119.99360 * 0.02562 * 1 2 3 25 25 H 0.97007 * 119.99836 * 5.52639 * 11 9 7 26 26 H 1.07993 * 120.01226 * 359.97438 * 13 12 11 27 27 H 1.08006 * 119.89997 * 180.02562 * 14 13 12 28 28 H 1.08005 * 119.88871 * 179.74124 * 15 14 13 29 29 H 1.08007 * 119.98804 * 179.97438 * 16 15 14 30 30 H 1.08995 * 109.46697 * 300.00125 * 19 18 17 31 31 H 1.09004 * 109.47094 * 60.00090 * 19 18 17 32 32 H 1.09006 * 109.46992 * 299.99835 * 20 19 18 33 33 H 1.08996 * 109.47198 * 59.99793 * 20 19 18 34 34 H 0.97000 * 119.99528 * 0.02562 * 22 21 20 35 35 H 0.97005 * 119.99700 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8817 2.3965 -1.2125 6 1 1.8816 2.3964 1.2125 7 6 2.0070 -1.2136 0.0005 8 1 3.0870 -1.2137 0.0001 9 6 1.2978 -2.4417 0.0005 10 8 0.0801 -2.4418 0.0005 11 7 1.9716 -3.6090 0.0005 12 6 1.2786 -4.8148 -0.1157 13 6 0.0323 -4.8461 -0.7289 14 6 -0.6511 -6.0407 -0.8419 15 6 -0.0980 -7.2086 -0.3464 16 6 1.1416 -7.1867 0.2652 17 6 1.8348 -5.9931 0.3844 18 8 3.0540 -5.9700 0.9851 19 6 3.5609 -7.2142 1.4721 20 6 4.9335 -6.9909 2.1102 21 6 5.4678 -8.3028 2.6243 22 7 6.6713 -8.3497 3.2293 23 8 4.8153 -9.3167 2.4928 24 1 -0.4849 0.8401 -0.0004 25 1 2.9383 -3.6110 0.0814 26 1 -0.4022 -3.9365 -1.1162 27 1 -1.6197 -6.0639 -1.3191 28 1 -0.6387 -8.1395 -0.4338 29 1 1.5694 -8.1003 0.6509 30 1 2.8754 -7.6195 2.2163 31 1 3.6555 -7.9170 0.6443 32 1 5.6188 -6.5858 1.3655 33 1 4.8393 -6.2880 2.9378 34 1 7.1932 -7.5389 3.3341 35 1 7.0150 -9.1942 3.5605 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116594960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:16 Heat of formation + Delta-G solvation = -91.375599 kcal Electronic energy + Delta-G solvation = -20776.258497 eV Core-core repulsion = 17353.418806 eV Total energy + Delta-G solvation = -3422.839690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.07787 -39.52621 -37.83769 -36.42369 -34.01440 -33.48229 -32.44507 -31.79329 -29.50845 -28.58452 -26.30675 -24.78754 -22.18375 -21.49069 -20.63491 -19.70364 -18.12856 -17.46674 -17.40806 -16.67901 -16.35656 -15.93705 -15.61825 -14.96124 -14.80494 -14.25909 -14.02120 -13.77518 -13.38791 -13.22546 -12.82691 -12.51515 -12.40881 -11.67257 -11.55682 -11.35811 -11.11184 -10.99809 -10.71354 -10.54104 -10.50215 -10.32863 -10.29023 -10.04051 -9.37110 -8.86858 -7.97923 -7.58251 -6.74691 -6.35241 -4.87510 2.06262 2.09572 2.31802 2.91387 3.04745 3.13360 3.17933 3.77478 3.99218 4.29179 4.50025 4.58431 4.73507 4.83220 4.94652 5.27494 5.42762 5.51979 5.63048 5.66438 5.74817 5.85125 6.10007 6.34275 6.41265 6.59511 6.84052 6.93128 6.94726 7.23398 7.25090 7.50185 7.72365 7.91290 7.92220 8.09378 8.30944 8.82146 9.34428 10.40058 10.61018 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016732 B = 0.004400 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.073436 B = 6361.871832 C = 7943.634765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.088 3.912 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.544 3.456 10 O -0.567 6.567 11 N -0.690 5.690 12 C 0.176 3.824 13 C -0.113 4.113 14 C -0.130 4.130 15 C -0.139 4.139 16 C -0.185 4.185 17 C 0.060 3.940 18 O -0.319 6.319 19 C 0.079 3.921 20 C -0.143 4.143 21 C 0.524 3.476 22 N -0.855 5.855 23 O -0.544 6.544 24 H 0.272 0.728 25 H 0.395 0.605 26 H 0.158 0.842 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.404 0.596 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.326 -11.468 3.485 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.089 0.911 9 C 0.353 3.647 10 O -0.451 6.451 11 N -0.332 5.332 12 C 0.076 3.924 13 C -0.134 4.134 14 C -0.149 4.149 15 C -0.158 4.158 16 C -0.204 4.204 17 C 0.013 3.987 18 O -0.233 6.233 19 C 0.003 3.997 20 C -0.183 4.183 21 C 0.310 3.690 22 N -0.419 5.419 23 O -0.420 6.420 24 H 0.083 0.917 25 H 0.228 0.772 26 H 0.176 0.824 27 H 0.134 0.866 28 H 0.130 0.870 29 H 0.138 0.862 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.232 0.768 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 9.880 -11.606 3.338 15.603 hybrid contribution 1.389 0.548 0.401 1.546 sum 11.269 -11.058 3.739 16.225 Atomic orbital electron populations 1.70025 1.07263 1.27724 1.32504 1.25761 0.94645 1.00658 0.92425 0.86235 0.80539 0.81164 0.78402 1.18581 1.19935 1.19971 1.20095 0.94394 0.89991 1.52736 0.91135 1.17064 0.87556 0.82093 0.77972 1.90589 1.13611 1.85965 1.54926 1.43989 1.09815 1.04052 1.75311 1.17442 0.93826 0.84569 0.96612 1.21570 0.93839 0.99445 0.98590 1.20956 0.99940 0.92327 1.01688 1.20665 0.95556 0.97927 1.01684 1.20874 0.97400 0.96074 1.06036 1.18686 0.86442 0.94045 0.99529 1.85881 1.32108 1.32293 1.73060 1.22218 0.93452 0.85419 0.98631 1.21474 0.97791 0.95811 1.03251 1.20421 0.81053 0.90719 0.76853 1.43834 1.20847 1.14521 1.62738 1.90777 1.57979 1.36543 1.56740 0.91727 0.77208 0.82437 0.86614 0.86965 0.86186 0.91589 0.91639 0.87474 0.87414 0.76771 0.76715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.45 11.73 55.55 0.65 -20.80 16 2 C 0.09 2.35 5.50 -17.35 -0.10 2.26 16 3 Si 0.91 19.24 29.56 -169.99 -5.02 14.21 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.54 -14.67 9.32 -37.51 -0.35 -15.02 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.54 15.25 7.38 -14.89 -0.11 15.14 16 10 O -0.57 -17.63 12.03 5.12 0.06 -17.57 16 11 N -0.69 -16.29 5.26 -12.30 -0.06 -16.36 16 12 C 0.18 3.92 6.45 -83.58 -0.54 3.38 16 13 C -0.11 -2.53 8.71 -39.38 -0.34 -2.87 16 14 C -0.13 -2.42 10.04 -39.58 -0.40 -2.82 16 15 C -0.14 -2.33 10.04 -39.52 -0.40 -2.73 16 16 C -0.18 -3.17 9.03 -39.47 -0.36 -3.52 16 17 C 0.06 1.16 6.71 -38.97 -0.26 0.89 16 18 O -0.32 -5.37 9.55 -19.52 -0.19 -5.56 16 19 C 0.08 1.05 4.03 37.16 0.15 1.20 16 20 C -0.14 -1.36 6.07 -27.89 -0.17 -1.53 16 21 C 0.52 5.19 8.10 -10.99 -0.09 5.10 16 22 N -0.86 -4.85 8.87 31.22 0.28 -4.57 16 23 O -0.54 -7.75 16.82 5.55 0.09 -7.65 16 24 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 25 H 0.39 8.30 8.30 -40.82 -0.34 7.96 16 26 H 0.16 4.00 5.78 -52.49 -0.30 3.69 16 27 H 0.12 1.87 8.06 -52.48 -0.42 1.44 16 28 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 29 H 0.12 1.78 6.30 -52.48 -0.33 1.45 16 30 H 0.07 0.91 7.62 -51.93 -0.40 0.51 16 31 H 0.07 0.86 7.62 -51.93 -0.40 0.47 16 32 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.40 1.11 8.83 -40.82 -0.36 0.75 16 35 H 0.40 1.91 8.93 -40.82 -0.36 1.55 16 LS Contribution 308.44 15.07 4.65 4.65 Total: -1.00 -35.54 308.44 -6.23 -41.76 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -3.73 Total: 12.40 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.96 Total: -0.52 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.86 Total: -41.72 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.03 Total: -30.78 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.54 -6.23 -41.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116594960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.613 kcal (2) G-P(sol) polarization free energy of solvation -35.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds