Wall clock time and date at job start Mon Mar 30 2020 23:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86793 * 120.00029 * 2 1 4 4 H 1.48504 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47524 * 300.00039 * 3 2 1 6 6 H 1.48506 * 109.47106 * 59.99996 * 3 2 1 7 7 C 1.40135 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99828 * 179.97438 * 7 2 1 9 9 C 1.41812 * 120.00024 * 0.02562 * 7 2 1 10 10 O 1.21772 * 120.00427 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00079 * 179.97438 * 9 7 2 12 12 C 1.39568 * 120.00175 * 185.52119 * 11 9 7 13 13 C 1.38936 * 120.11121 * 24.84325 * 12 11 9 14 14 C 1.38087 * 119.96901 * 180.02562 * 13 12 11 15 15 C 1.38394 * 120.19706 * 359.97438 * 14 13 12 16 16 C 1.38242 * 120.22348 * 0.02562 * 15 14 13 17 17 C 1.38544 * 120.02513 * 0.02562 * 16 15 14 18 18 O 1.35931 * 120.09533 * 180.02562 * 17 16 15 19 19 C 1.42904 * 117.00081 * 359.95057 * 18 17 16 20 20 C 1.52998 * 109.47142 * 179.97438 * 19 18 17 21 21 C 1.50695 * 109.47139 * 179.97438 * 20 19 18 22 22 N 1.34780 * 120.00201 * 179.97438 * 21 20 19 23 23 O 1.21285 * 119.99868 * 0.02562 * 21 20 19 24 24 H 0.97004 * 119.99360 * 0.02562 * 1 2 3 25 25 H 0.97007 * 119.99836 * 5.52639 * 11 9 7 26 26 H 1.07993 * 120.01226 * 359.97438 * 13 12 11 27 27 H 1.08006 * 119.89997 * 180.02562 * 14 13 12 28 28 H 1.08005 * 119.88871 * 179.74124 * 15 14 13 29 29 H 1.08007 * 119.98804 * 179.97438 * 16 15 14 30 30 H 1.08995 * 109.46697 * 300.00125 * 19 18 17 31 31 H 1.09004 * 109.47094 * 60.00090 * 19 18 17 32 32 H 1.09006 * 109.46992 * 299.99835 * 20 19 18 33 33 H 1.08996 * 109.47198 * 59.99793 * 20 19 18 34 34 H 0.97000 * 119.99528 * 0.02562 * 22 21 20 35 35 H 0.97005 * 119.99700 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8817 2.3965 -1.2125 6 1 1.8816 2.3964 1.2125 7 6 2.0070 -1.2136 0.0005 8 1 3.0870 -1.2137 0.0001 9 6 1.2978 -2.4417 0.0005 10 8 0.0801 -2.4418 0.0005 11 7 1.9716 -3.6090 0.0005 12 6 1.2786 -4.8148 -0.1157 13 6 0.0323 -4.8461 -0.7289 14 6 -0.6511 -6.0407 -0.8419 15 6 -0.0980 -7.2086 -0.3464 16 6 1.1416 -7.1867 0.2652 17 6 1.8348 -5.9931 0.3844 18 8 3.0540 -5.9700 0.9851 19 6 3.5609 -7.2142 1.4721 20 6 4.9335 -6.9909 2.1102 21 6 5.4678 -8.3028 2.6243 22 7 6.6713 -8.3497 3.2293 23 8 4.8153 -9.3167 2.4928 24 1 -0.4849 0.8401 -0.0004 25 1 2.9383 -3.6110 0.0814 26 1 -0.4022 -3.9365 -1.1162 27 1 -1.6197 -6.0639 -1.3191 28 1 -0.6387 -8.1395 -0.4338 29 1 1.5694 -8.1003 0.6509 30 1 2.8754 -7.6195 2.2163 31 1 3.6555 -7.9170 0.6443 32 1 5.6188 -6.5858 1.3655 33 1 4.8393 -6.2880 2.9378 34 1 7.1932 -7.5389 3.3341 35 1 7.0150 -9.1942 3.5605 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116594960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:16 Heat of formation + Delta-G solvation = -120.136096 kcal Electronic energy + Delta-G solvation = -20777.505646 eV Core-core repulsion = 17353.418806 eV Total energy + Delta-G solvation = -3424.086839 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41815 -40.55566 -39.54561 -37.98797 -35.34424 -34.71393 -34.46066 -32.80858 -31.08296 -30.19337 -28.24588 -25.86452 -23.81772 -22.91035 -21.79117 -21.19064 -19.62019 -19.05203 -18.15357 -17.86626 -17.64552 -17.37052 -17.23442 -16.46933 -15.92076 -15.65777 -15.62947 -15.06264 -14.94104 -14.55092 -14.46418 -14.02075 -13.86272 -13.20174 -12.95241 -12.88568 -12.74176 -12.67807 -12.42468 -11.98439 -11.96393 -11.70330 -11.18417 -11.15201 -10.83811 -10.67781 -9.82380 -9.37368 -8.45025 -8.36504 -6.99366 0.53029 0.56625 1.40373 1.40933 1.56988 1.59480 1.93477 2.22537 2.38244 2.87310 2.92020 3.03867 3.66730 3.67790 3.97026 4.02834 4.15387 4.20801 4.31699 4.47765 4.62100 4.74594 4.77424 4.82026 5.05628 5.22630 5.33519 5.45816 5.71181 5.87427 5.89445 5.94432 6.18322 6.20231 6.40928 6.63025 6.75072 7.30188 7.42111 8.39762 8.58032 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016732 B = 0.004400 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.073436 B = 6361.871832 C = 7943.634765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.032 3.968 3 Si 1.003 2.997 4 H -0.245 1.245 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.564 4.564 8 H 0.089 0.911 9 C 0.529 3.471 10 O -0.611 6.611 11 N -0.686 5.686 12 C 0.133 3.867 13 C -0.139 4.139 14 C -0.135 4.135 15 C -0.119 4.119 16 C -0.182 4.182 17 C 0.068 3.932 18 O -0.325 6.325 19 C 0.072 3.928 20 C -0.137 4.137 21 C 0.526 3.474 22 N -0.832 5.832 23 O -0.593 6.593 24 H 0.279 0.721 25 H 0.404 0.596 26 H 0.116 0.884 27 H 0.138 0.862 28 H 0.156 0.844 29 H 0.150 0.850 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.421 0.579 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.535 -12.387 4.160 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.186 4.186 3 Si 0.822 3.178 4 H -0.168 1.168 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.599 4.599 8 H 0.107 0.893 9 C 0.338 3.662 10 O -0.499 6.499 11 N -0.329 5.329 12 C 0.035 3.965 13 C -0.160 4.160 14 C -0.153 4.153 15 C -0.138 4.138 16 C -0.201 4.201 17 C 0.020 3.980 18 O -0.240 6.240 19 C -0.003 4.003 20 C -0.176 4.176 21 C 0.311 3.689 22 N -0.397 5.397 23 O -0.474 6.474 24 H 0.089 0.911 25 H 0.239 0.761 26 H 0.133 0.867 27 H 0.156 0.844 28 H 0.173 0.827 29 H 0.167 0.833 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.252 0.748 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 12.167 -12.566 4.032 17.950 hybrid contribution 0.733 0.637 0.222 0.996 sum 12.901 -11.929 4.254 18.079 Atomic orbital electron populations 1.70176 1.09693 1.29432 1.33607 1.27037 0.95521 1.05130 0.90941 0.84894 0.79386 0.74847 0.78703 1.16832 1.19141 1.19141 1.20611 0.95480 0.90567 1.53236 0.89260 1.17449 0.87325 0.83679 0.77740 1.90556 1.15380 1.87043 1.56890 1.43546 1.10073 1.03791 1.75455 1.17661 0.94588 0.85117 0.99148 1.21348 0.94864 0.99496 1.00298 1.21183 1.00658 0.91640 1.01850 1.21138 0.95143 0.98640 0.98895 1.21271 0.97350 0.96278 1.05190 1.18690 0.87261 0.93445 0.98570 1.85877 1.30987 1.34524 1.72617 1.22463 0.95207 0.84000 0.98657 1.21448 0.96002 0.96101 1.04078 1.20442 0.81713 0.89972 0.76761 1.43646 1.19449 1.15828 1.60734 1.90762 1.59610 1.37972 1.59068 0.91072 0.76126 0.86662 0.84436 0.82677 0.83268 0.92095 0.91436 0.85422 0.86016 0.74777 0.75814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.77 11.73 21.85 0.26 -47.51 16 2 C 0.03 1.73 5.50 85.33 0.47 2.20 16 3 Si 1.00 39.52 29.56 68.60 2.03 41.54 16 4 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.56 -31.66 9.32 23.61 0.22 -31.44 16 8 H 0.09 4.48 7.85 -2.91 -0.02 4.45 16 9 C 0.53 31.18 7.38 85.13 0.63 31.81 16 10 O -0.61 -40.56 12.03 -4.58 -0.06 -40.62 16 11 N -0.69 -33.79 5.26 -311.03 -1.64 -35.42 16 12 C 0.13 6.15 6.45 38.40 0.25 6.39 16 13 C -0.14 -6.51 8.71 22.40 0.20 -6.32 16 14 C -0.13 -4.96 10.04 22.27 0.22 -4.74 16 15 C -0.12 -3.68 10.04 22.31 0.22 -3.45 16 16 C -0.18 -5.83 9.03 22.34 0.20 -5.62 16 17 C 0.07 2.57 6.71 22.66 0.15 2.72 16 18 O -0.33 -10.63 9.55 -92.77 -0.89 -11.51 16 19 C 0.07 1.78 4.03 71.98 0.29 2.07 16 20 C -0.14 -2.26 6.07 29.85 0.18 -2.07 16 21 C 0.53 9.24 8.10 87.65 0.71 9.95 16 22 N -0.83 -7.10 8.87 -173.53 -1.54 -8.64 16 23 O -0.59 -16.09 16.82 -3.05 -0.05 -16.14 16 24 H 0.28 14.91 8.29 -92.71 -0.77 14.14 16 25 H 0.40 17.51 8.30 -92.70 -0.77 16.74 16 26 H 0.12 6.39 5.78 -2.91 -0.02 6.37 16 27 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 28 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 29 H 0.15 3.93 6.30 -2.91 -0.02 3.91 16 30 H 0.06 1.57 7.62 -2.39 -0.02 1.55 16 31 H 0.07 1.65 7.62 -2.38 -0.02 1.63 16 32 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.42 0.91 8.83 -92.71 -0.82 0.09 16 35 H 0.41 2.83 8.93 -92.70 -0.83 2.01 16 Total: -1.00 -82.43 308.44 0.61 -81.82 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: -1.24 Total: 34.98 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 3.74 Total: 1.50 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -2.92 Total: -91.57 kcal Atomic # 8 Polarization: -67.28 SS G_CDS: -0.99 Total: -68.27 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.54 kcal Total: -82.43 0.61 -81.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116594960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.318 kcal (2) G-P(sol) polarization free energy of solvation -82.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds